Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:19:07 (176425): wrapper (7.7.26015): starting
03:19:07 (176425): wrapper: running run_atlas (--nthreads 3)
[2026-01-11 03:19:07] Arguments: --nthreads 3
[2026-01-11 03:19:07] Threads: 3
[2026-01-11 03:19:07] Checking for CVMFS
[2026-01-11 03:19:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 03:19:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 03:19:07] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 03:19:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 03:19:07] 2.9.2.0 3347489 4527 93476 155000 2 81 15767715 36864001 0 130560 0 2611312 99.988 167191 3870 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-11 03:19:07] CVMFS is ok
[2026-01-11 03:19:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-11 03:19:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-11 03:19:07] Further information can be found at the LHC@home message board.
[2026-01-11 03:19:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 03:19:07] Checking for apptainer binary...
[2026-01-11 03:19:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 03:19:07] Running /usr/bin/apptainer --version
[2026-01-11 03:19:07] apptainer version 1.4.1-1.1
[2026-01-11 03:19:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 03:19:07] thA325a
[2026-01-11 03:19:07] apptainer works
[2026-01-11 03:19:07] Set ATHENA_PROC_NUMBER=3
[2026-01-11 03:19:07] Set ATHENA_CORE_NUMBER=3
[2026-01-11 03:19:07] Starting ATLAS job with PandaID=6963169979
[2026-01-11 03:19:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 07:39:37]  *** The last 200 lines of the pilot log: ***
[2026-01-11 07:39:37] 2026-01-11 06:39:08,947 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 07:39:37] 2026-01-11 06:39:08,947 | INFO     | collected zombie processes
[2026-01-11 07:39:37] 2026-01-11 06:39:08,947 | INFO     | will attempt to kill all subprocesses of pid=186591
[2026-01-11 07:39:37] 2026-01-11 06:39:08,997 | INFO     | process IDs to be killed: [186591] (in reverse order)
[2026-01-11 07:39:37] 2026-01-11 06:39:09,024 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 07:39:37] 2026-01-11 06:39:09,024 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 07:39:37] 2026-01-11 06:39:09,026 | INFO     | did not find any defunct processes belonging to 186591
[2026-01-11 07:39:37] 2026-01-11 06:39:09,027 | INFO     | did not find any defunct processes belonging to 186591
[2026-01-11 07:39:37] 2026-01-11 06:39:09,027 | INFO     | ready for new job
[2026-01-11 07:39:37] 2026-01-11 06:39:09,027 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 07:39:37] 2026-01-11 06:39:09,028 | INFO     | ***************************************
[2026-01-11 07:39:37] 2026-01-11 06:39:09,028 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 07:39:37] 2026-01-11 06:39:09,028 | INFO     | ***************************************
[2026-01-11 07:39:37] 2026-01-11 06:39:09,028 | INFO     | 
[2026-01-11 07:39:37] 2026-01-11 06:39:09,028 | INFO     | architecture information:
[2026-01-11 07:39:37] 2026-01-11 06:39:09,029 | INFO     | executing command: cat /etc/os-release
[2026-01-11 07:39:37] 2026-01-11 06:39:09,038 | INFO     | cat /etc/os-release:
[2026-01-11 07:39:37] NAME="CentOS Linux"
[2026-01-11 07:39:37] VERSION="7 (Core)"
[2026-01-11 07:39:37] ID="centos"
[2026-01-11 07:39:37] ID_LIKE="rhel fedora"
[2026-01-11 07:39:37] VERSION_ID="7"
[2026-01-11 07:39:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 07:39:37] ANSI_COLOR="0;31"
[2026-01-11 07:39:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 07:39:37] HOME_URL="https://www.centos.org/"
[2026-01-11 07:39:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 07:39:37] 
[2026-01-11 07:39:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 07:39:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 07:39:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 07:39:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 07:39:37] 
[2026-01-11 07:39:37] 2026-01-11 06:39:09,038 | INFO     | ***************************************
[2026-01-11 07:39:37] 2026-01-11 06:39:09,541 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-11 07:39:37] 2026-01-11 06:39:09,555 | INFO     | sufficient remaining disk space (245252489216 B)
[2026-01-11 07:39:37] 2026-01-11 06:39:09,555 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 07:39:37] 2026-01-11 06:39:09,555 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 07:39:37] 2026-01-11 06:39:09,555 | INFO     | update_server=False
[2026-01-11 07:39:37] 2026-01-11 06:39:09,555 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 07:39:37] 2026-01-11 06:39:09,555 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 07:39:37] 2026-01-11 06:39:09,556 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-11 07:39:37] 2026-01-11 06:39:09,556 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 07:39:37] 2026-01-11 06:39:09,556 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 07:39:37] 2026-01-11 06:39:09,556 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 07:39:37] 2026-01-11 06:39:09,648 | INFO     | all data control threads have been joined
[2026-01-11 07:39:37] 2026-01-11 06:39:09,836 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 07:39:37] 2026-01-11 06:39:09,837 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 07:39:37] 2026-01-11 06:39:09,837 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 07:39:37] 2026-01-11 06:39:09,837 | INFO     | will abort loop
[2026-01-11 07:39:37] 2026-01-11 06:39:10,127 | INFO     | all payload control threads have been joined
[2026-01-11 07:39:37] 2026-01-11 06:39:10,508 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 07:39:37] 2026-01-11 06:39:10,561 | INFO     | [job] retrieve thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:10,561 | INFO     | [job] queue monitor thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:10,654 | INFO     | [data] control thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:10,660 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 07:39:37] 2026-01-11 06:39:10,842 | INFO     | all job control threads have been joined
[2026-01-11 07:39:37] 2026-01-11 06:39:10,843 | INFO     | [job] job monitor thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:10,909 | INFO     | [data] copytool_in thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:10,912 | INFO     | [payload] validate_post thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:11,133 | INFO     | [payload] control thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:11,279 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:11,300 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:11,303 | INFO     | [job] validate thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:11,404 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:11,848 | INFO     | [job] control thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:11,968 | INFO     | [payload] failed_post thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:12,666 | INFO     | [data] copytool_out thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:14,514 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:19,914 | INFO     | job.realtimelogging is not enabled
[2026-01-11 07:39:37] 2026-01-11 06:39:20,920 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 07:39:37] 2026-01-11 06:39:30,657 | INFO     | [monitor] cgroup control has ended
[2026-01-11 07:39:37] 2026-01-11 06:39:32,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139937690306368)>', '<ExcThread(monitor, started 139937072539392)>']
[2026-01-11 07:39:37] 2026-01-11 06:39:32,677 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 07:39:37] 2026-01-11 06:39:32,678 | INFO     | [monitor] control thread has ended
[2026-01-11 07:39:37] 2026-01-11 06:39:37,543 | INFO     | all workflow threads have been joined
[2026-01-11 07:39:37] 2026-01-11 06:39:37,544 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 07:39:37] 2026-01-11 06:39:37,544 | INFO     | traces error code: 0
[2026-01-11 07:39:37] 2026-01-11 06:39:37,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 07:39:37] 2026-01-11 06:39:37,596 [wrapper] ==== pilot stdout END ====
[2026-01-11 07:39:37] 2026-01-11 06:39:37,599 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 07:39:37] 2026-01-11 06:39:37,601 [wrapper] pilotpid: 180146
[2026-01-11 07:39:37] 2026-01-11 06:39:37,603 [wrapper] Pilot exit status: 0
[2026-01-11 07:39:37] 2026-01-11 06:39:37,610 [wrapper] pandaids: 6963169979
[2026-01-11 07:39:37] 2026-01-11 06:39:37,628 [wrapper] cleanup supervisor_pilot  217666 180147
[2026-01-11 07:39:37] 2026-01-11 06:39:37,630 [wrapper] Test setup, not cleaning
[2026-01-11 07:39:37] 2026-01-11 06:39:37,632 [wrapper] apfmon messages muted
[2026-01-11 07:39:37] 2026-01-11 06:39:37,635 [wrapper] ==== wrapper stdout END ====
[2026-01-11 07:39:37] 2026-01-11 06:39:37,637 [wrapper] ==== wrapper stderr END ====
[2026-01-11 07:39:37]  *** Error codes and diagnostics ***
[2026-01-11 07:39:37]     "exeErrorCode": 0,
[2026-01-11 07:39:37]     "exeErrorDiag": "",
[2026-01-11 07:39:37]     "pilotErrorCode": 0,
[2026-01-11 07:39:37]     "pilotErrorDiag": "",
[2026-01-11 07:39:37]  *** Listing of results directory ***
[2026-01-11 07:39:37] total 777488
[2026-01-11 07:39:37] -rwx------ 1 boinc boinc     36322 Jan  9 08:16 runpilot2-wrapper.sh
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc      5112 Jan  9 08:20 queuedata.json
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc       100 Jan 11 03:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 07:39:37] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 03:19 run_atlas
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc       105 Jan 11 03:19 job.xml
[2026-01-11 07:39:37] -rw-r--r-- 2 boinc boinc 390768179 Jan 11 03:19 EVNT.47962006._000052.pool.root.1
[2026-01-11 07:39:37] -rw-r--r-- 2 boinc boinc    592612 Jan 11 03:19 input.tar.gz
[2026-01-11 07:39:37] -rw-r--r-- 2 boinc boinc     15847 Jan 11 03:19 start_atlas.sh
[2026-01-11 07:39:37] drwxrwx--x 2 boinc boinc      4096 Jan 11 03:19 shared
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc         0 Jan 11 03:19 boinc_setup_complete
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc      6440 Jan 11 03:19 init_data.xml
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc         0 Jan 11 03:19 boinc_lockfile
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc      2891 Jan 11 03:19 pandaJob.out
[2026-01-11 07:39:37] -rw------- 1 boinc boinc    989548 Jan 11 03:19 agis_schedconf.cvmfs.json
[2026-01-11 07:39:37] drwx------ 5 boinc boinc      4096 Jan 11 03:19 pilot3
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc       531 Jan 11 07:35 boinc_task_state.xml
[2026-01-11 07:39:37] -rw------- 1 boinc boinc        95 Jan 11 07:38 pilot_heartbeat.json
[2026-01-11 07:39:37] -rw------- 1 boinc boinc 395249970 Jan 11 07:38 HITS.47962010._000479.pool.root.1
[2026-01-11 07:39:37] -rw------- 1 boinc boinc      1020 Jan 11 07:38 memory_monitor_summary.json
[2026-01-11 07:39:37] -rw------- 1 boinc boinc   1516240 Jan 11 07:39 agis_ddmendpoints.agis.ALL.json
[2026-01-11 07:39:37] -rw------- 1 boinc boinc    897134 Jan 11 07:39 log.47962010._000479.job.log.tgz.1
[2026-01-11 07:39:37] -rw------- 1 boinc boinc      8549 Jan 11 07:39 heartbeat.json
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc        28 Jan 11 07:39 wrapper_checkpoint.txt
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc      8192 Jan 11 07:39 boinc_mmap_file
[2026-01-11 07:39:37] -rw------- 1 boinc boinc      4814 Jan 11 07:39 pilotlog.txt
[2026-01-11 07:39:37] -rw------- 1 boinc boinc   2211635 Jan 11 07:39 log.47962010._000479.job.log.1
[2026-01-11 07:39:37] -rw------- 1 boinc boinc       353 Jan 11 07:39 output.list
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc       620 Jan 11 07:39 runtime_log
[2026-01-11 07:39:37] -rw------- 1 boinc boinc   3133440 Jan 11 07:39 result.tar.gz
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc      8903 Jan 11 07:39 runtime_log.err
[2026-01-11 07:39:37] -rw------- 1 boinc boinc       665 Jan 11 07:39 XIXMDm3uLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWZmKDmUhvO8m.diag
[2026-01-11 07:39:37] -rw-r--r-- 1 boinc boinc     10654 Jan 11 07:39 stderr.txt
[2026-01-11 07:39:37] HITS file was successfully produced:
[2026-01-11 07:39:37] -rw------- 1 boinc boinc 395249970 Jan 11 07:38 shared/HITS.pool.root.1
[2026-01-11 07:39:37]  *** Contents of shared directory: ***
[2026-01-11 07:39:37] total 771264
[2026-01-11 07:39:37] -rw-r--r-- 2 boinc boinc 390768179 Jan 11 03:19 ATLAS.root_0
[2026-01-11 07:39:37] -rw-r--r-- 2 boinc boinc    592612 Jan 11 03:19 input.tar.gz
[2026-01-11 07:39:37] -rw-r--r-- 2 boinc boinc     15847 Jan 11 03:19 start_atlas.sh
[2026-01-11 07:39:37] -rw------- 1 boinc boinc 395249970 Jan 11 07:38 HITS.pool.root.1
[2026-01-11 07:39:37] -rw------- 1 boinc boinc   3133440 Jan 11 07:39 result.tar.gz
07:39:39 (176425): run_atlas exited; CPU time 45322.145156
07:39:39 (176425): called boinc_finish(0)

</stderr_txt>
]]>

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