Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:47 (3974063): wrapper (7.7.26015): starting
00:02:47 (3974063): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 00:02:47] Arguments: --nthreads 12
[2026-01-10 00:02:47] Threads: 12
[2026-01-10 00:02:47] Checking for CVMFS
[2026-01-10 00:02:47] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:02:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:02:48] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:02:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:02:48] 2.13.3.0 9651 24533 186732 154968 3 70 39596194 40960000 16369 16776704 0 18771291 99.682 19488903 40434 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 00:02:48] CVMFS is ok
[2026-01-10 00:02:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 00:02:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 00:02:49] Further information can be found at the LHC@home message board.
[2026-01-10 00:02:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:02:49] Checking for apptainer binary...
[2026-01-10 00:02:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 00:02:49] Running /usr/bin/apptainer --version
[2026-01-10 00:02:49] apptainer version 1.4.5-2.el9
[2026-01-10 00:02:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:02:50] c-210-35-4.aglt2.org
[2026-01-10 00:02:50] apptainer works
[2026-01-10 00:02:50] Set ATHENA_PROC_NUMBER=12
[2026-01-10 00:02:50] Set ATHENA_CORE_NUMBER=12
[2026-01-10 00:02:50] Starting ATLAS job with PandaID=6963169980
[2026-01-10 00:02:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 14:36:38]  *** The last 200 lines of the pilot log: ***
[2026-01-10 14:36:38] 2026-01-10 19:35:22,100 | INFO     | total number of processed events: 450 (read)
[2026-01-10 14:36:38] 2026-01-10 19:35:22,101 | INFO     | executing command: lscpu
[2026-01-10 14:36:38] 2026-01-10 19:35:22,261 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 14:36:38] 2026-01-10 19:35:23,526 | INFO     | time since job start (52285s) is within the limit (349056.0s)
[2026-01-10 14:36:38] 2026-01-10 19:35:24,024 | INFO     | monitor loop #3306: job 0:6963169980 is in state 'finished'
[2026-01-10 14:36:38] 2026-01-10 19:35:24,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 14:36:38] 2026-01-10 19:35:25,533 | INFO     | time since job start (52287s) is within the limit (349056.0s)
[2026-01-10 14:36:38] 2026-01-10 19:35:26,529 | INFO     | monitor loop #3307: job 0:6963169980 is in state 'finished'
[2026-01-10 14:36:38] 2026-01-10 19:35:26,529 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 14:36:38] 2026-01-10 19:35:27,543 | INFO     | time since job start (52289s) is within the limit (349056.0s)
[2026-01-10 14:36:38] 2026-01-10 19:35:29,096 | INFO     | monitor loop #3308: job 0:6963169980 is in state 'finished'
[2026-01-10 14:36:38] 2026-01-10 19:35:29,096 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 14:36:38] 2026-01-10 19:35:29,617 | INFO     | time since job start (52291s) is within the limit (349056.0s)
[2026-01-10 14:36:38] 2026-01-10 19:35:31,624 | INFO     | time since job start (52293s) is within the limit (349056.0s)
[2026-01-10 14:36:38] 2026-01-10 19:35:31,642 | INFO     | monitor loop #3309: job 0:6963169980 is in state 'finished'
[2026-01-10 14:36:38] 2026-01-10 19:35:31,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 14:36:38] 2026-01-10 19:35:32,822 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 14:36:38] 2026-01-10 19:35:32,844 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3030.7885357142864
[2026-01-10 14:36:38] 2026-01-10 19:35:32,855 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963169980/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 14:36:38] 2026-01-10 19:35:32,856 | INFO     | extracted standard info from prmon json
[2026-01-10 14:36:38] 2026-01-10 19:35:32,856 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 14:36:38] 2026-01-10 19:35:32,856 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 14:36:38] 2026-01-10 19:35:32,927 | INFO     | fitting pss+swap vs Time
[2026-01-10 14:36:38] 2026-01-10 19:35:33,010 | INFO     | sum of square deviations: 193860757632.7253
[2026-01-10 14:36:38] 2026-01-10 19:35:33,082 | INFO     | sum of deviations: 4094768464872.7783
[2026-01-10 14:36:38] 2026-01-10 19:35:33,082 | INFO     | mean x: 1768047624.5906432
[2026-01-10 14:36:38] 2026-01-10 19:35:33,082 | INFO     | mean y: 3082196.6222222224
[2026-01-10 14:36:38] 2026-01-10 19:35:33,083 | INFO     | intersect: -37341998602.46809
[2026-01-10 14:36:38] 2026-01-10 19:35:33,084 | INFO     | chi2: 23.830174621501815
[2026-01-10 14:36:38] 2026-01-10 19:35:33,085 | INFO     | sum of square deviations: 190481100872.4707
[2026-01-10 14:36:38] 2026-01-10 19:35:33,128 | INFO     | sum of deviations: 4345439487505.369
[2026-01-10 14:36:38] 2026-01-10 19:35:33,129 | INFO     | mean x: 1768047472.1058824
[2026-01-10 14:36:38] 2026-01-10 19:35:33,129 | INFO     | mean y: 3093499.4070588234
[2026-01-10 14:36:38] 2026-01-10 19:35:33,129 | INFO     | intersect: -40331319026.99244
[2026-01-10 14:36:38] 2026-01-10 19:35:33,130 | INFO     | chi2: 21.462359753128812
[2026-01-10 14:36:38] 2026-01-10 19:35:33,130 | INFO     | current chi2=21.462359753128812 (change=9.936204438202221 %)
[2026-01-10 14:36:38] 2026-01-10 19:35:33,131 | INFO     | right removable region: 849
[2026-01-10 14:36:38] 2026-01-10 19:35:33,131 | INFO     | sum of square deviations: 190479488070.38242
[2026-01-10 14:36:38] 2026-01-10 19:35:33,149 | INFO     | sum of deviations: 3720044549281.8364
[2026-01-10 14:36:38] 2026-01-10 19:35:33,150 | INFO     | mean x: 1768047777.1117647
[2026-01-10 14:36:38] 2026-01-10 19:35:33,150 | INFO     | mean y: 3099096.5070588235
[2026-01-10 14:36:38] 2026-01-10 19:35:33,150 | INFO     | intersect: -34526689715.631065
[2026-01-10 14:36:38] 2026-01-10 19:35:33,151 | INFO     | chi2: 19.209751436605956
[2026-01-10 14:36:38] 2026-01-10 19:35:33,151 | INFO     | current chi2=19.209751436605956 (change=19.388960669750528 %)
[2026-01-10 14:36:38] 2026-01-10 19:35:33,151 | INFO     | left removable region: 10
[2026-01-10 14:36:38] 2026-01-10 19:35:33,152 | INFO     | sum of square deviations: 183181574804.37463
[2026-01-10 14:36:38] 2026-01-10 19:35:33,168 | INFO     | sum of deviations: 3682424990500.011
[2026-01-10 14:36:38] 2026-01-10 19:35:33,169 | INFO     | mean x: 1768047746.6519666
[2026-01-10 14:36:38] 2026-01-10 19:35:33,169 | INFO     | mean y: 3127181.325387366
[2026-01-10 14:36:38] 2026-01-10 19:35:33,169 | INFO     | intersect: -35539220424.43911
[2026-01-10 14:36:38] 2026-01-10 19:35:33,170 | INFO     | chi2: 13.24624185966902
[2026-01-10 14:36:38] 2026-01-10 19:35:33,170 | INFO     | current memory leak: 20.10 B/s (using 839 data points, chi2=13.25)
[2026-01-10 14:36:38] 2026-01-10 19:35:33,171 | INFO     | could have reported an average CPU frequency of 3007 MHz (32 samples)
[2026-01-10 14:36:38] 2026-01-10 19:35:33,172 | INFO     | ..............................
[2026-01-10 14:36:38] 2026-01-10 19:35:33,172 | INFO     | . Timing measurements:
[2026-01-10 14:36:38] 2026-01-10 19:35:33,172 | INFO     | . get job = 0 s
[2026-01-10 14:36:38] 2026-01-10 19:35:33,172 | INFO     | . initial setup = 4 s
[2026-01-10 14:36:38] 2026-01-10 19:35:33,172 | INFO     | . payload setup = 41 s
[2026-01-10 14:36:38] 2026-01-10 19:35:33,172 | INFO     | . stage-in = 0 s
[2026-01-10 14:36:38] 2026-01-10 19:35:33,172 | INFO     | . payload execution = 52165 s
[2026-01-10 14:36:38] 2026-01-10 19:35:33,172 | INFO     | . stage-out = 5 s
[2026-01-10 14:36:38] 2026-01-10 19:35:33,172 | INFO     | . log creation = 1 s
[2026-01-10 14:36:38] 2026-01-10 19:35:33,172 | INFO     | ..............................
[2026-01-10 14:36:38] 2026-01-10 19:35:33,338 | INFO     | 
[2026-01-10 14:36:38] 2026-01-10 19:35:33,338 | INFO     | job summary report
[2026-01-10 14:36:38] 2026-01-10 19:35:33,338 | INFO     | --------------------------------------------------
[2026-01-10 14:36:38] 2026-01-10 19:35:33,338 | INFO     | PanDA job id: 6963169980
[2026-01-10 14:36:38] 2026-01-10 19:35:33,338 | INFO     | task id: 47962010
[2026-01-10 14:36:38] 2026-01-10 19:35:33,338 | INFO     | errors: (none)
[2026-01-10 14:36:38] 2026-01-10 19:35:33,338 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 14:36:38] 2026-01-10 19:35:33,338 | INFO     | pilot state: finished 
[2026-01-10 14:36:38] 2026-01-10 19:35:33,338 | INFO     | transexitcode: 0
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | exeerrorcode: 0
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | exeerrordiag: 
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | exitcode: 0
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | exitmsg: OK
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | cpuconsumptiontime: 131926 s
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | nevents: 450
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | neventsw: 0
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | pid: 3997107
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | pgrp: 3997107
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | corecount: 12
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | event service: False
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | sizes: {0: 2283792, 1: 2284648, 2: 2284648, 13: 2284676, 23: 2284732, 32: 2285022, 34: 2285178, 52211: 2334674, 52212: 2334673, 52218: 2343723, 52220: 2343779, 522
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | --------------------------------------------------
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | 
[2026-01-10 14:36:38] 2026-01-10 19:35:33,339 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-10 14:36:38] 2026-01-10 19:35:33,382 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,383 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,383 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,383 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,383 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,383 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,383 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,384 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,385 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,385 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 14:36:38] 2026-01-10 19:35:33,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,385 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 14:36:38] 2026-01-10 19:35:33,386 | INFO     | job 6963169980 has completed (purged errors)
[2026-01-10 14:36:38] 2026-01-10 19:35:33,386 | INFO     | overall cleanup function is called
[2026-01-10 14:36:38] 2026-01-10 19:35:33,610 | INFO     | PID=3983328 has CPU usage=11.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 14:36:38] 2026-01-10 19:35:33,610 | INFO     | .. there are 15 such processes running
[2026-01-10 14:36:38] 2026-01-10 19:35:34,426 | INFO     | --- collectZombieJob: --- 10, [3997107]
[2026-01-10 14:36:38] 2026-01-10 19:35:34,426 | INFO     | zombie collector waiting for pid 3997107
[2026-01-10 14:36:38] 2026-01-10 19:35:34,426 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 14:36:38] 2026-01-10 19:35:34,427 | INFO     | collected zombie processes
[2026-01-10 14:36:38] 2026-01-10 19:35:34,427 | INFO     | will attempt to kill all subprocesses of pid=3997107
[2026-01-10 14:36:38] 2026-01-10 19:35:36,540 | INFO     | process IDs to be killed: [3997107] (in reverse order)
[2026-01-10 14:36:38] 2026-01-10 19:35:36,658 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 14:36:38] 2026-01-10 19:35:36,658 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 14:36:38] 2026-01-10 19:35:36,697 | INFO     | did not find any defunct processes belonging to 3997107
[2026-01-10 14:36:38] 2026-01-10 19:35:36,783 | INFO     | did not find any defunct processes belonging to 3997107
[2026-01-10 14:36:38] 2026-01-10 19:35:36,783 | INFO     | ready for new job
[2026-01-10 14:36:38] 2026-01-10 19:35:36,784 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 14:36:38] 2026-01-10 19:35:36,812 | INFO     | ***************************************
[2026-01-10 14:36:38] 2026-01-10 19:35:36,812 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 14:36:38] 2026-01-10 19:35:36,812 | INFO     | ***************************************
[2026-01-10 14:36:38] 2026-01-10 19:35:36,812 | INFO     | 
[2026-01-10 14:36:38] 2026-01-10 19:35:36,839 | INFO     | architecture information:
[2026-01-10 14:36:38] 2026-01-10 19:35:36,844 | INFO     | executing command: cat /etc/os-release
[2026-01-10 14:36:38] 2026-01-10 19:35:36,903 | INFO     | cat /etc/os-release:
[2026-01-10 14:36:38] NAME="CentOS Linux"
[2026-01-10 14:36:38] VERSION="7 (Core)"
[2026-01-10 14:36:38] ID="centos"
[2026-01-10 14:36:38] ID_LIKE="rhel fedora"
[2026-01-10 14:36:38] VERSION_ID="7"
[2026-01-10 14:36:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 14:36:38] ANSI_COLOR="0;31"
[2026-01-10 14:36:38] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 14:36:38] HOME_URL="https://www.centos.org/"
[2026-01-10 14:36:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 14:36:38] 
[2026-01-10 14:36:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 14:36:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 14:36:38] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 14:36:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 14:36:38] 
[2026-01-10 14:36:38] 2026-01-10 19:35:36,904 | INFO     | ***************************************
[2026-01-10 14:36:38] 2026-01-10 19:35:37,407 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-10 14:36:38] 2026-01-10 19:35:37,438 | INFO     | sufficient remaining disk space (72998715392 B)
[2026-01-10 14:36:38] 2026-01-10 19:35:37,438 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 14:36:38] 2026-01-10 19:35:37,438 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 14:36:38] 2026-01-10 19:35:37,439 | INFO     | update_server=False
[2026-01-10 14:36:38] 2026-01-10 19:35:37,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 14:36:38] 2026-01-10 19:35:37,439 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 14:36:38] 2026-01-10 19:35:37,653 | INFO     | all data control threads have been joined
[2026-01-10 14:36:38] 2026-01-10 19:35:37,775 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:36:38] 2026-01-10 19:35:37,776 | INFO     | aborting loop
[2026-01-10 14:36:38] 2026-01-10 19:35:37,827 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 14:36:38] 2026-01-10 19:35:38,333 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:36:38] 2026-01-10 19:35:38,372 | INFO     | all job control threads have been joined
[2026-01-10 14:36:38] 2026-01-10 19:35:38,444 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:38,449 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:38,454 | INFO     | [job] retrieve thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:38,457 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:38,470 | INFO     | [payload] validate_post thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:38,500 | INFO     | all payload control threads have been joined
[2026-01-10 14:36:38] 2026-01-10 19:35:38,635 | INFO     | [payload] failed_post thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:38,659 | INFO     | [data] control thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:38,781 | INFO     | [job] job monitor thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:39,267 | INFO     | [data] copytool_in thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:39,339 | INFO     | [job] queue monitor thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:39,378 | INFO     | [job] control thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:39,433 | INFO     | [job] validate thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:39,506 | INFO     | [payload] control thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:39,680 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:39,835 | INFO     | [data] copytool_out thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:35:41,489 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 14:36:38] 2026-01-10 19:36:08,071 | INFO     | PID=3983328 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 14:36:38] 2026-01-10 19:36:08,072 | INFO     | .. there are 15 such processes running
[2026-01-10 14:36:38] 2026-01-10 19:36:08,072 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 14:36:38] 2026-01-10 19:36:08,072 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 14:36:38] 2026-01-10 19:36:08,072 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 14:36:38] 2026-01-10 19:36:30,161 | INFO     | [monitor] cgroup control has ended
[2026-01-10 14:36:38] 2026-01-10 19:36:30,927 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139813720819520)>', '<ExcThread(monitor, started 139813172791040)>']
[2026-01-10 14:36:38] 2026-01-10 19:36:31,275 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 14:36:38] 2026-01-10 19:36:31,275 | INFO     | [monitor] control thread has ended
[2026-01-10 14:36:38] 2026-01-10 19:36:35,953 | INFO     | all workflow threads have been joined
[2026-01-10 14:36:38] 2026-01-10 19:36:35,954 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 14:36:38] 2026-01-10 19:36:35,955 | INFO     | traces error code: 0
[2026-01-10 14:36:38] 2026-01-10 19:36:35,955 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 14:36:38] 2026-01-10 19:36:37,331 [wrapper] ==== pilot stdout END ====
[2026-01-10 14:36:38] 2026-01-10 19:36:37,365 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 14:36:38] 2026-01-10 19:36:37,388 [wrapper] pilotpid: 3983328
[2026-01-10 14:36:38] 2026-01-10 19:36:37,407 [wrapper] Pilot exit status: 0
[2026-01-10 14:36:38] 2026-01-10 19:36:37,537 [wrapper] pandaids: 6963169980
[2026-01-10 14:36:38] 2026-01-10 19:36:37,639 [wrapper] cleanup supervisor_pilot 2166237 3983329
[2026-01-10 14:36:38] 2026-01-10 19:36:37,642 [wrapper] Test setup, not cleaning
[2026-01-10 14:36:38] 2026-01-10 19:36:37,645 [wrapper] apfmon messages muted
[2026-01-10 14:36:38] 2026-01-10 19:36:37,648 [wrapper] ==== wrapper stdout END ====
[2026-01-10 14:36:38] 2026-01-10 19:36:37,650 [wrapper] ==== wrapper stderr END ====
[2026-01-10 14:36:38]  *** Error codes and diagnostics ***
[2026-01-10 14:36:38]     "exeErrorCode": 0,
[2026-01-10 14:36:38]     "exeErrorDiag": "",
[2026-01-10 14:36:38]     "pilotErrorCode": 0,
[2026-01-10 14:36:38]     "pilotErrorDiag": "",
[2026-01-10 14:36:38]  *** Listing of results directory ***
[2026-01-10 14:36:38] total 797920
[2026-01-10 14:36:38] -rwx------. 1 boincer umatlas     36322 Jan  9 02:16 runpilot2-wrapper.sh
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:20 queuedata.json
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:20 pilot3.tar.gz
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas       100 Jan 10 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 14:36:38] -rwxr-xr-x. 1 boincer umatlas      7986 Jan 10 00:02 run_atlas
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas       105 Jan 10 00:02 job.xml
[2026-01-10 14:36:38] -rw-r--r--. 2 boincer umatlas 390768179 Jan 10 00:02 EVNT.47962006._000052.pool.root.1
[2026-01-10 14:36:38] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 00:02 start_atlas.sh
[2026-01-10 14:36:38] drwxrwx--x. 2 boincer umatlas      4096 Jan 10 00:02 shared
[2026-01-10 14:36:38] -rw-r--r--. 2 boincer umatlas    592611 Jan 10 00:02 input.tar.gz
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas         0 Jan 10 00:02 boinc_lockfile
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas      2891 Jan 10 00:02 pandaJob.out
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas        57 Jan 10 00:02 setup.sh.local
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas    989374 Jan 10 00:03 agis_schedconf.cvmfs.json
[2026-01-10 14:36:38] drwx------. 5 boincer umatlas      4096 Jan 10 00:03 pilot3
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas       533 Jan 10 14:18 boinc_task_state.xml
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas      6842 Jan 10 14:31 init_data.xml
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas 404071580 Jan 10 14:34 HITS.47962010._000480.pool.root.1
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas      1054 Jan 10 14:35 memory_monitor_summary.json
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas   1516240 Jan 10 14:35 agis_ddmendpoints.agis.ALL.json
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas        95 Jan 10 14:35 pilot_heartbeat.json
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas   2356611 Jan 10 14:35 log.47962010._000480.job.log.tgz.1
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas      8613 Jan 10 14:35 heartbeat.json
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas      4824 Jan 10 14:36 pilotlog.txt
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas   6793769 Jan 10 14:36 log.47962010._000480.job.log.1
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas       353 Jan 10 14:36 output.list
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 14:36 boinc_mmap_file
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas       620 Jan 10 14:36 runtime_log
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas   9175040 Jan 10 14:36 result.tar.gz
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas      9355 Jan 10 14:36 runtime_log.err
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas       662 Jan 10 14:36 FhZMDm3uLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXZmKDm8ccrHo.diag
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas        29 Jan 10 14:36 wrapper_checkpoint.txt
[2026-01-10 14:36:38] -rw-r--r--. 1 boincer umatlas     21835 Jan 10 14:36 stderr.txt
[2026-01-10 14:36:38] HITS file was successfully produced:
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas 404071580 Jan 10 14:34 shared/HITS.pool.root.1
[2026-01-10 14:36:38]  *** Contents of shared directory: ***
[2026-01-10 14:36:38] total 785780
[2026-01-10 14:36:38] -rw-r--r--. 2 boincer umatlas 390768179 Jan 10 00:02 ATLAS.root_0
[2026-01-10 14:36:38] -rw-r--r--. 2 boincer umatlas     15847 Jan 10 00:02 start_atlas.sh
[2026-01-10 14:36:38] -rw-r--r--. 2 boincer umatlas    592611 Jan 10 00:02 input.tar.gz
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas 404071580 Jan 10 14:34 HITS.pool.root.1
[2026-01-10 14:36:38] -rw-------. 1 boincer umatlas   9175040 Jan 10 14:36 result.tar.gz
14:36:40 (3974063): run_atlas exited; CPU time 132484.910369
14:36:40 (3974063): called boinc_finish(0)

</stderr_txt>
]]>

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