Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:15:45 (29523): wrapper (7.7.26015): starting
02:15:45 (29523): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 02:15:45] Arguments: --nthreads 8
[2026-01-10 02:15:45] Threads: 8
[2026-01-10 02:15:45] Checking for CVMFS
[2026-01-10 02:15:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:15:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:15:45] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:15:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:15:45] 2.11.0.0 4292 129418 109952 154962 0 1 2131249 4096001 0 130560 2 11471703 99.550 9279248 554 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 02:15:45] CVMFS is ok
[2026-01-10 02:15:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:15:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:15:45] Further information can be found at the LHC@home message board.
[2026-01-10 02:15:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:15:45] Checking for apptainer binary...
[2026-01-10 02:15:45] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 02:15:45] apptainer is not installed, using version from CVMFS
[2026-01-10 02:15:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:15:45] WARNING: Environment variable TMPDIR already has value [/tmp/job_11009851/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node039
[2026-01-10 02:15:45] apptainer works
[2026-01-10 02:15:45] Set ATHENA_PROC_NUMBER=8
[2026-01-10 02:15:45] Set ATHENA_CORE_NUMBER=8
[2026-01-10 02:15:45] Starting ATLAS job with PandaID=6963197090
[2026-01-10 02:15:45] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11009851/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 04:46:30]  *** The last 200 lines of the pilot log: ***
[2026-01-10 04:46:30] 2026-01-10 03:45:57,156 | INFO     | total number of processed events: 450 (read)
[2026-01-10 04:46:30] 2026-01-10 03:45:57,156 | INFO     | executing command: lscpu
[2026-01-10 04:46:30] 2026-01-10 03:45:57,187 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 04:46:30] 2026-01-10 03:45:57,282 | INFO     | time since job start (9005s) is within the limit (349056.0s)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,809 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 04:46:30] 2026-01-10 03:45:58,814 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 3082.4248906249995
[2026-01-10 04:46:30] 2026-01-10 03:45:58,819 | INFO     | using path: /tmp/job_11009851/atlas/pilot/slots/0/PanDA_Pilot-6963197090/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,819 | INFO     | extracted standard info from prmon json
[2026-01-10 04:46:30] 2026-01-10 03:45:58,819 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 04:46:30] 2026-01-10 03:45:58,819 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 04:46:30] 2026-01-10 03:45:58,821 | INFO     | fitting pss+swap vs Time
[2026-01-10 04:46:30] 2026-01-10 03:45:58,821 | INFO     | sum of square deviations: 984941258.0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,821 | INFO     | sum of deviations: 74600312462.0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,821 | INFO     | mean x: 1768012292.0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,821 | INFO     | mean y: 2682833.1088435375
[2026-01-10 04:46:30] 2026-01-10 03:45:58,821 | INFO     | intersect: -133908114738.39139
[2026-01-10 04:46:30] 2026-01-10 03:45:58,822 | INFO     | chi2: 6.8590862255549245
[2026-01-10 04:46:30] 2026-01-10 03:45:58,822 | INFO     | sum of square deviations: 887813855.5
[2026-01-10 04:46:30] 2026-01-10 03:45:58,822 | INFO     | sum of deviations: 100470413560.0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,822 | INFO     | mean x: 1768012139.5
[2026-01-10 04:46:30] 2026-01-10 03:45:58,822 | INFO     | mean y: 2722836.408450704
[2026-01-10 04:46:30] 2026-01-10 03:45:58,822 | INFO     | intersect: -200076279912.00653
[2026-01-10 04:46:30] 2026-01-10 03:45:58,822 | INFO     | chi2: 5.245707194733314
[2026-01-10 04:46:30] 2026-01-10 03:45:58,822 | INFO     | current chi2=5.245707194733314 (change=23.521777941945643 %)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,822 | INFO     | right removable region: 141
[2026-01-10 04:46:30] 2026-01-10 03:45:58,823 | INFO     | sum of square deviations: 887813855.5
[2026-01-10 04:46:30] 2026-01-10 03:45:58,823 | INFO     | sum of deviations: 20537194611.5
[2026-01-10 04:46:30] 2026-01-10 03:45:58,823 | INFO     | mean x: 1768012444.5
[2026-01-10 04:46:30] 2026-01-10 03:45:58,823 | INFO     | mean y: 2767582.5985915493
[2026-01-10 04:46:30] 2026-01-10 03:45:58,823 | INFO     | intersect: -40895462855.35873
[2026-01-10 04:46:30] 2026-01-10 03:45:58,823 | INFO     | chi2: 2.475239750812671
[2026-01-10 04:46:30] 2026-01-10 03:45:58,823 | INFO     | current chi2=2.475239750812671 (change=63.91298098002237 %)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,823 | INFO     | sum of square deviations: 797291228.0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,824 | INFO     | sum of deviations: 1029731667.0000019
[2026-01-10 04:46:30] 2026-01-10 03:45:58,824 | INFO     | mean x: 1768012597.0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,824 | INFO     | mean y: 2800035.890510949
[2026-01-10 04:46:30] 2026-01-10 03:45:58,824 | INFO     | intersect: -2280654860.9515405
[2026-01-10 04:46:30] 2026-01-10 03:45:58,824 | INFO     | chi2: 1.764932002677177
[2026-01-10 04:46:30] 2026-01-10 03:45:58,824 | INFO     | current chi2=1.764932002677177 (change=28.69652315103155 %)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,824 | INFO     | sum of square deviations: 713140813.0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,824 | INFO     | sum of deviations: -3355064324.499999
[2026-01-10 04:46:30] 2026-01-10 03:45:58,824 | INFO     | mean x: 1768012749.5
[2026-01-10 04:46:30] 2026-01-10 03:45:58,824 | INFO     | mean y: 2807955.992424242
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | intersect: 8320655417.498744
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | chi2: 1.7508806526593264
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | current chi2=1.7508806526593264 (change=0.796141154250511 %)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | left removable region: 30
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | sum of square deviations: 424045160.0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | sum of deviations: 12758415167.0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | mean x: 1768013024.0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | mean y: 2878378.117117117
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | intersect: -53192031760.3576
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | chi2: 0.002337972244580167
[2026-01-10 04:46:30] 2026-01-10 03:45:58,825 | INFO     | current memory leak: 30.09 B/s (using 111 data points, chi2=0.00)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | could have reported an average CPU frequency of 2833 MHz (8 samples)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | ..............................
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | . Timing measurements:
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | . get job = 0 s
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | . initial setup = 1 s
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | . payload setup = 69 s
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | . stage-in = 0 s
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | . payload execution = 8912 s
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | . stage-out = 0 s
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | . log creation = 0 s
[2026-01-10 04:46:30] 2026-01-10 03:45:58,826 | INFO     | ..............................
[2026-01-10 04:46:30] 2026-01-10 03:45:58,977 | INFO     | 
[2026-01-10 04:46:30] 2026-01-10 03:45:58,977 | INFO     | job summary report
[2026-01-10 04:46:30] 2026-01-10 03:45:58,977 | INFO     | --------------------------------------------------
[2026-01-10 04:46:30] 2026-01-10 03:45:58,977 | INFO     | PanDA job id: 6963197090
[2026-01-10 04:46:30] 2026-01-10 03:45:58,977 | INFO     | task id: 47962010
[2026-01-10 04:46:30] 2026-01-10 03:45:58,977 | INFO     | errors: (none)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,977 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 04:46:30] 2026-01-10 03:45:58,977 | INFO     | pilot state: finished 
[2026-01-10 04:46:30] 2026-01-10 03:45:58,977 | INFO     | transexitcode: 0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | exeerrorcode: 0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | exeerrordiag: 
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | exitcode: 0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | exitmsg: OK
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | cpuconsumptiontime: 64771 s
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | nevents: 450
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | neventsw: 0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | pid: 22721
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | pgrp: 22721
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | corecount: 8
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | event service: False
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | sizes: {0: 2284464, 1: 2284774, 2: 2285036, 11: 2285064, 8985: 2312823, 8987: 2321847, 8990: 2322031, 8992: 2322277}
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | --------------------------------------------------
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | 
[2026-01-10 04:46:30] 2026-01-10 03:45:58,978 | INFO     | executing command: ls -lF /tmp/job_11009851/atlas/pilot/slots/0
[2026-01-10 04:46:30] 2026-01-10 03:45:58,986 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,986 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,986 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,986 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,986 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | job 6963197090 has completed (purged errors)
[2026-01-10 04:46:30] 2026-01-10 03:45:58,987 | INFO     | overall cleanup function is called
[2026-01-10 04:46:30] 2026-01-10 03:45:59,994 | INFO     | --- collectZombieJob: --- 10, [22721]
[2026-01-10 04:46:30] 2026-01-10 03:45:59,994 | INFO     | zombie collector waiting for pid 22721
[2026-01-10 04:46:30] 2026-01-10 03:45:59,994 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 04:46:30] 2026-01-10 03:45:59,994 | INFO     | collected zombie processes
[2026-01-10 04:46:30] 2026-01-10 03:45:59,994 | INFO     | will attempt to kill all subprocesses of pid=22721
[2026-01-10 04:46:30] 2026-01-10 03:46:00,113 | INFO     | process IDs to be killed: [22721] (in reverse order)
[2026-01-10 04:46:30] 2026-01-10 03:46:00,156 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 04:46:30] 2026-01-10 03:46:00,157 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 04:46:30] 2026-01-10 03:46:00,161 | INFO     | did not find any defunct processes belonging to 22721
[2026-01-10 04:46:30] 2026-01-10 03:46:00,164 | INFO     | did not find any defunct processes belonging to 22721
[2026-01-10 04:46:30] 2026-01-10 03:46:00,165 | INFO     | ready for new job
[2026-01-10 04:46:30] 2026-01-10 03:46:00,165 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 04:46:30] 2026-01-10 03:46:00,165 | INFO     | ***************************************
[2026-01-10 04:46:30] 2026-01-10 03:46:00,165 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 04:46:30] 2026-01-10 03:46:00,165 | INFO     | ***************************************
[2026-01-10 04:46:30] 2026-01-10 03:46:00,166 | INFO     | 
[2026-01-10 04:46:30] 2026-01-10 03:46:00,180 | INFO     | architecture information:
[2026-01-10 04:46:30] 2026-01-10 03:46:00,180 | INFO     | executing command: cat /etc/os-release
[2026-01-10 04:46:30] 2026-01-10 03:46:00,187 | INFO     | cat /etc/os-release:
[2026-01-10 04:46:30] NAME="CentOS Linux"
[2026-01-10 04:46:30] VERSION="7 (Core)"
[2026-01-10 04:46:30] ID="centos"
[2026-01-10 04:46:30] ID_LIKE="rhel fedora"
[2026-01-10 04:46:30] VERSION_ID="7"
[2026-01-10 04:46:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 04:46:30] ANSI_COLOR="0;31"
[2026-01-10 04:46:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 04:46:30] HOME_URL="https://www.centos.org/"
[2026-01-10 04:46:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 04:46:30] 
[2026-01-10 04:46:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 04:46:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 04:46:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 04:46:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 04:46:30] 
[2026-01-10 04:46:30] 2026-01-10 03:46:00,187 | INFO     | ***************************************
[2026-01-10 04:46:30] 2026-01-10 03:46:00,689 | INFO     | executing command: df -mP /tmp/job_11009851/atlas/pilot/slots/0
[2026-01-10 04:46:30] 2026-01-10 03:46:00,697 | INFO     | sufficient remaining disk space (218882899968 B)
[2026-01-10 04:46:30] 2026-01-10 03:46:00,697 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 04:46:30] 2026-01-10 03:46:00,697 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 04:46:30] 2026-01-10 03:46:00,697 | INFO     | update_server=False
[2026-01-10 04:46:30] 2026-01-10 03:46:00,697 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 04:46:30] 2026-01-10 03:46:00,697 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:46:30] 2026-01-10 03:46:00,697 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 04:46:30] 2026-01-10 03:46:00,697 | INFO     | aborting loop
[2026-01-10 04:46:30] 2026-01-10 03:46:00,911 | INFO     | all job control threads have been joined
[2026-01-10 04:46:30] 2026-01-10 03:46:01,698 | INFO     | [job] queue monitor thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:01,702 | INFO     | [job] retrieve thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:01,702 | INFO     | [job] job monitor thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:01,724 | INFO     | all data control threads have been joined
[2026-01-10 04:46:30] 2026-01-10 03:46:01,916 | INFO     | [job] control thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:02,007 | INFO     | [data] copytool_in thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:02,011 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 04:46:30] 2026-01-10 03:46:02,064 | INFO     | all payload control threads have been joined
[2026-01-10 04:46:30] 2026-01-10 03:46:02,158 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:02,729 | INFO     | [data] control thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:02,802 | INFO     | [payload] validate_post thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:03,008 | INFO     | [payload] failed_post thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:03,014 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:03,025 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:03,036 | INFO     | [job] validate thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:03,068 | INFO     | [payload] control thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:03,142 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:03,160 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 04:46:30] 2026-01-10 03:46:04,016 | INFO     | [data] copytool_out thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:06,843 | INFO     | [monitor] cgroup control has ended
[2026-01-10 04:46:30] 2026-01-10 03:46:07,165 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 04:46:30] 2026-01-10 03:46:08,279 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2026-01-10 04:46:30] 2026-01-10 03:46:13,304 | INFO     | all workflow threads have been joined
[2026-01-10 04:46:30] 2026-01-10 03:46:13,304 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 04:46:30] 2026-01-10 03:46:13,304 | INFO     | traces error code: 0
[2026-01-10 04:46:30] 2026-01-10 03:46:13,304 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 04:46:30] 2026-01-10 03:46:30,488 | INFO     | PID=1966 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 04:46:30] 2026-01-10 03:46:30,488 | INFO     | .. there are 7 such processes running
[2026-01-10 04:46:30] 2026-01-10 03:46:30,488 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 04:46:30] 2026-01-10 03:46:30,488 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 04:46:30] 2026-01-10 03:46:30,488 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 04:46:30] 2026-01-10 03:46:30,488 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 04:46:30] 2026-01-10 03:46:30,488 | INFO     | [monitor] control thread has ended
[2026-01-10 04:46:30] 2026-01-10 03:46:30,543 [wrapper] ==== pilot stdout END ====
[2026-01-10 04:46:30] 2026-01-10 03:46:30,544 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 04:46:30] 2026-01-10 03:46:30,545 [wrapper] pilotpid: 1966
[2026-01-10 04:46:30] 2026-01-10 03:46:30,547 [wrapper] Pilot exit status: 0
[2026-01-10 04:46:30] 2026-01-10 03:46:30,551 [wrapper] pandaids: 6963197090
[2026-01-10 04:46:30] 2026-01-10 03:46:30,576 [wrapper] cleanup supervisor_pilot   544 1967
[2026-01-10 04:46:30] 2026-01-10 03:46:30,577 [wrapper] Test setup, not cleaning
[2026-01-10 04:46:30] 2026-01-10 03:46:30,578 [wrapper] apfmon messages muted
[2026-01-10 04:46:30] 2026-01-10 03:46:30,580 [wrapper] ==== wrapper stdout END ====
[2026-01-10 04:46:30] 2026-01-10 03:46:30,581 [wrapper] ==== wrapper stderr END ====
[2026-01-10 04:46:30]  *** Error codes and diagnostics ***
[2026-01-10 04:46:30]     "exeErrorCode": 0,
[2026-01-10 04:46:30]     "exeErrorDiag": "",
[2026-01-10 04:46:30]     "pilotErrorCode": 0,
[2026-01-10 04:46:30]     "pilotErrorDiag": "",
[2026-01-10 04:46:30]  *** Listing of results directory ***
[2026-01-10 04:46:30] total 770952
[2026-01-10 04:46:30] -rwx------ 1 mf493845 unix-user     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user      5112 Jan  9 08:20 queuedata.json
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user       100 Jan 10 00:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 04:46:30] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 00:36 run_atlas
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user       105 Jan 10 00:36 job.xml
[2026-01-10 04:46:30] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:15 start_atlas.sh
[2026-01-10 04:46:30] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 02:15 shared
[2026-01-10 04:46:30] -rw-r--r-- 2 mf493845 unix-user    592612 Jan 10 02:15 input.tar.gz
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user      6390 Jan 10 02:15 init_data.xml
[2026-01-10 04:46:30] -rw-r--r-- 2 mf493845 unix-user 391566827 Jan 10 02:15 EVNT.47962006._000064.pool.root.1
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user         0 Jan 10 02:15 boinc_setup_complete
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user      8192 Jan 10 02:15 boinc_mmap_file
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user         0 Jan 10 02:15 boinc_lockfile
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user      2891 Jan 10 02:15 pandaJob.out
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user    989374 Jan 10 02:15 agis_schedconf.cvmfs.json
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user   1516240 Jan 10 02:15 agis_ddmendpoints.agis.ALL.json
[2026-01-10 04:46:30] drwx------ 5 mf493845 unix-user       440 Jan 10 02:15 pilot3
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user 388679717 Jan 10 04:45 HITS.47962010._000763.pool.root.1
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user      1022 Jan 10 04:45 memory_monitor_summary.json
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user   1339536 Jan 10 04:45 log.47962010._000763.job.log.tgz.1
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user      7904 Jan 10 04:45 heartbeat.json
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user        95 Jan 10 04:46 pilot_heartbeat.json
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user       819 Jan 10 04:46 pilotlog.txt
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user   1319477 Jan 10 04:46 log.47962010._000763.job.log.1
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user       353 Jan 10 04:46 output.list
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user       620 Jan 10 04:46 runtime_log
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user   2682880 Jan 10 04:46 result.tar.gz
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user       648 Jan 10 04:46 YvVLDmFvLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmGPhKDmtKFxdn.diag
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user      9220 Jan 10 04:46 runtime_log.err
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user     21624 Jan 10 04:46 stderr.txt
[2026-01-10 04:46:30] HITS file was successfully produced:
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user 388679717 Jan 10 04:45 shared/HITS.pool.root.1
[2026-01-10 04:46:30]  *** Contents of shared directory: ***
[2026-01-10 04:46:30] total 765180
[2026-01-10 04:46:30] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:15 start_atlas.sh
[2026-01-10 04:46:30] -rw-r--r-- 2 mf493845 unix-user    592612 Jan 10 02:15 input.tar.gz
[2026-01-10 04:46:30] -rw-r--r-- 2 mf493845 unix-user 391566827 Jan 10 02:15 ATLAS.root_0
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user 388679717 Jan 10 04:45 HITS.pool.root.1
[2026-01-10 04:46:30] -rw------- 1 mf493845 unix-user   2682880 Jan 10 04:46 result.tar.gz
04:46:31 (29523): run_atlas exited; CPU time 64866.427834
04:46:31 (29523): called boinc_finish(0)

</stderr_txt>
]]>

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