Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:08:10 (822936): wrapper (7.7.26015): starting
17:08:10 (822936): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:08:10] Arguments: --nthreads 8
[2026-01-09 17:08:10] Threads: 8
[2026-01-09 17:08:10] Checking for CVMFS
[2026-01-09 17:08:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:08:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:08:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:08:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:08:11] 2.13.3.0 12448 23461 241508 154957 3 699 37723721 40960000 27319 16776704 0 89574047 99.661 80223406 37521 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 17:08:11] CVMFS is ok
[2026-01-09 17:08:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:08:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:08:11] Further information can be found at the LHC@home message board.
[2026-01-09 17:08:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:08:11] Checking for apptainer binary...
[2026-01-09 17:08:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:08:11] Running /usr/bin/apptainer --version
[2026-01-09 17:08:11] apptainer version 1.4.5-2.el9
[2026-01-09 17:08:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:08:12] c-212-19.aglt2.org
[2026-01-09 17:08:12] apptainer works
[2026-01-09 17:08:12] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:08:12] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:08:12] Starting ATLAS job with PandaID=6963383735
[2026-01-09 17:08:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
17:49:34 (971533): wrapper (7.7.26015): starting
17:49:34 (971533): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:49:34] Arguments: --nthreads 8
[2026-01-09 17:49:34] Threads: 8
[2026-01-09 17:49:34] This job has been restarted, cleaning up previous attempt
[2026-01-09 17:49:34] Checking for CVMFS
[2026-01-09 17:49:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:49:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:49:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:49:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:49:34] 2.13.3.0 12448 23503 222636 154959 2 176 23779552 40960000 22819 16776704 0 89681648 99.660 81386202 37879 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 17:49:34] CVMFS is ok
[2026-01-09 17:49:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:49:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:49:34] Further information can be found at the LHC@home message board.
[2026-01-09 17:49:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:49:34] Checking for apptainer binary...
[2026-01-09 17:49:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:49:34] Running /usr/bin/apptainer --version
[2026-01-09 17:49:34] apptainer version 1.4.5-2.el9
[2026-01-09 17:49:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:49:34] c-212-19.aglt2.org
[2026-01-09 17:49:34] apptainer works
[2026-01-09 17:49:34] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:49:34] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:49:34] Starting ATLAS job with PandaID=6963383735
[2026-01-09 17:49:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:40:12]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:40:12] 2026-01-10 01:39:34,568 | INFO     | monitor loop #690: job 0:6963383735 is in state 'finished'
[2026-01-09 20:40:12] 2026-01-10 01:39:34,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:40:12] 2026-01-10 01:39:34,640 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 20:40:12] 2026-01-10 01:39:34,654 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3300.854354166666
[2026-01-09 20:40:12] 2026-01-10 01:39:34,675 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963383735/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:40:12] 2026-01-10 01:39:34,676 | INFO     | extracted standard info from prmon json
[2026-01-09 20:40:12] 2026-01-10 01:39:34,676 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:40:12] 2026-01-10 01:39:34,676 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:40:12] 2026-01-10 01:39:34,677 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:40:12] 2026-01-10 01:39:34,677 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:40:12] 2026-01-10 01:39:34,684 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:40:12] 2026-01-10 01:39:34,684 | INFO     | sum of square deviations: 1418530798.361445
[2026-01-09 20:40:12] 2026-01-10 01:39:34,685 | INFO     | sum of deviations: 13208010348.927713
[2026-01-09 20:40:12] 2026-01-10 01:39:34,685 | INFO     | mean x: 1768004059.759036
[2026-01-09 20:40:12] 2026-01-10 01:39:34,685 | INFO     | mean y: 2488185.548192771
[2026-01-09 20:40:12] 2026-01-10 01:39:34,686 | INFO     | intersect: -16459484966.68608
[2026-01-09 20:40:12] 2026-01-10 01:39:34,686 | INFO     | chi2: 2.0599793818100536
[2026-01-09 20:40:12] 2026-01-10 01:39:34,686 | INFO     | sum of square deviations: 1294197395.5155234
[2026-01-09 20:40:12] 2026-01-10 01:39:34,687 | INFO     | sum of deviations: 23814836846.757755
[2026-01-09 20:40:12] 2026-01-10 01:39:34,687 | INFO     | mean x: 1768003907.2670808
[2026-01-09 20:40:12] 2026-01-10 01:39:34,687 | INFO     | mean y: 2500860.633540373
[2026-01-09 20:40:12] 2026-01-10 01:39:34,687 | INFO     | intersect: -32530963309.43148
[2026-01-09 20:40:12] 2026-01-10 01:39:34,687 | INFO     | chi2: 1.2706841240630689
[2026-01-09 20:40:12] 2026-01-10 01:39:34,687 | INFO     | current chi2=1.2706841240630689 (change=38.31568726932841 %)
[2026-01-09 20:40:12] 2026-01-10 01:39:34,687 | INFO     | sum of square deviations: 1177303639.743593
[2026-01-09 20:40:12] 2026-01-10 01:39:34,714 | INFO     | sum of deviations: 23163973284.000015
[2026-01-09 20:40:12] 2026-01-10 01:39:34,715 | INFO     | mean x: 1768003754.7435896
[2026-01-09 20:40:12] 2026-01-10 01:39:34,715 | INFO     | mean y: 2500011.0
[2026-01-09 20:40:12] 2026-01-10 01:39:34,715 | INFO     | intersect: -34783761033.61179
[2026-01-09 20:40:12] 2026-01-10 01:39:34,715 | INFO     | chi2: 1.2711554495280704
[2026-01-09 20:40:12] 2026-01-10 01:39:34,715 | INFO     | current chi2=1.2711554495280704 (change=-0.03709226046630851 %)
[2026-01-09 20:40:12] 2026-01-10 01:39:34,715 | INFO     | right removable region: 155
[2026-01-09 20:40:12] 2026-01-10 01:39:34,715 | INFO     | sum of square deviations: 1294171165.5155234
[2026-01-09 20:40:12] 2026-01-10 01:39:34,716 | INFO     | sum of deviations: -9480761288.813665
[2026-01-09 20:40:12] 2026-01-10 01:39:34,716 | INFO     | mean x: 1768004212.2670808
[2026-01-09 20:40:12] 2026-01-10 01:39:34,716 | INFO     | mean y: 2515629.204968944
[2026-01-09 20:40:12] 2026-01-10 01:39:34,716 | INFO     | intersect: 12954454554.103062
[2026-01-09 20:40:12] 2026-01-10 01:39:34,717 | INFO     | chi2: 0.8327513616299997
[2026-01-09 20:40:12] 2026-01-10 01:39:34,717 | INFO     | current chi2=0.8327513616299997 (change=59.5747720106654 %)
[2026-01-09 20:40:12] 2026-01-10 01:39:34,717 | INFO     | sum of square deviations: 1177300045.1474338
[2026-01-09 20:40:12] 2026-01-10 01:39:34,717 | INFO     | sum of deviations: -10898146829.307692
[2026-01-09 20:40:12] 2026-01-10 01:39:34,718 | INFO     | mean x: 1768004364.775641
[2026-01-09 20:40:12] 2026-01-10 01:39:34,718 | INFO     | mean y: 2517423.076923077
[2026-01-09 20:40:12] 2026-01-10 01:39:34,718 | INFO     | intersect: 16368754086.024538
[2026-01-09 20:40:12] 2026-01-10 01:39:34,718 | INFO     | chi2: 0.8193202279625618
[2026-01-09 20:40:12] 2026-01-10 01:39:34,718 | INFO     | current chi2=0.8193202279625618 (change=1.612862408432251 %)
[2026-01-09 20:40:12] 2026-01-10 01:39:34,718 | INFO     | left removable region: 20
[2026-01-09 20:40:12] 2026-01-10 01:39:34,722 | INFO     | sum of square deviations: 762973764.8592576
[2026-01-09 20:40:12] 2026-01-10 01:39:34,723 | INFO     | sum of deviations: 2286040298.4074073
[2026-01-09 20:40:12] 2026-01-10 01:39:34,723 | INFO     | mean x: 1768004334.274074
[2026-01-09 20:40:12] 2026-01-10 01:39:34,723 | INFO     | mean y: 2528057.2592592593
[2026-01-09 20:40:12] 2026-01-10 01:39:34,723 | INFO     | intersect: -5294808944.43313
[2026-01-09 20:40:12] 2026-01-10 01:39:34,723 | INFO     | chi2: 0.0021939086180821727
[2026-01-09 20:40:12] 2026-01-10 01:39:34,724 | INFO     | current memory leak: 3.00 B/s (using 135 data points, chi2=0.00)
[2026-01-09 20:40:12] 2026-01-10 01:39:34,724 | INFO     | could have reported an average CPU frequency of 3280 MHz (9 samples)
[2026-01-09 20:40:12] 2026-01-10 01:39:34,724 | INFO     | ..............................
[2026-01-09 20:40:12] 2026-01-10 01:39:34,724 | INFO     | . Timing measurements:
[2026-01-09 20:40:12] 2026-01-10 01:39:34,724 | INFO     | . get job = 0 s
[2026-01-09 20:40:12] 2026-01-10 01:39:34,724 | INFO     | . initial setup = 1 s
[2026-01-09 20:40:12] 2026-01-10 01:39:34,724 | INFO     | . payload setup = 12 s
[2026-01-09 20:40:12] 2026-01-10 01:39:34,724 | INFO     | . stage-in = 0 s
[2026-01-09 20:40:12] 2026-01-10 01:39:34,724 | INFO     | . payload execution = 10129 s
[2026-01-09 20:40:12] 2026-01-10 01:39:34,725 | INFO     | . stage-out = 4 s
[2026-01-09 20:40:12] 2026-01-10 01:39:34,725 | INFO     | . log creation = 0 s
[2026-01-09 20:40:12] 2026-01-10 01:39:34,725 | INFO     | ..............................
[2026-01-09 20:40:12] 2026-01-10 01:39:35,218 | INFO     | 
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | job summary report
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | --------------------------------------------------
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | PanDA job id: 6963383735
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | task id: 47929288
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | errors: (none)
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | pilot state: finished 
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | transexitcode: 0
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | exeerrorcode: 0
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | exeerrordiag: 
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | exitcode: 0
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | exitmsg: OK
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | cpuconsumptiontime: 31012 s
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | nevents: 400
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | neventsw: 0
[2026-01-09 20:40:12] 2026-01-10 01:39:35,219 | INFO     | pid: 1031404
[2026-01-09 20:40:12] 2026-01-10 01:39:35,220 | INFO     | pgrp: 1031404
[2026-01-09 20:40:12] 2026-01-10 01:39:35,220 | INFO     | corecount: 8
[2026-01-09 20:40:12] 2026-01-10 01:39:35,220 | INFO     | event service: False
[2026-01-09 20:40:12] 2026-01-10 01:39:35,220 | INFO     | sizes: {0: 2283963, 1: 2283963, 6: 2284253, 11: 2284281, 10146: 2313342, 10152: 2322340, 10154: 2322524, 10170: 2322782}
[2026-01-09 20:40:12] 2026-01-10 01:39:35,220 | INFO     | --------------------------------------------------
[2026-01-09 20:40:12] 2026-01-10 01:39:35,220 | INFO     | 
[2026-01-09 20:40:12] 2026-01-10 01:39:35,220 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 20:40:12] 2026-01-10 01:39:35,274 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,275 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,275 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,275 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,275 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,275 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,275 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,275 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:40:12] 2026-01-10 01:39:35,276 | INFO     | job 6963383735 has completed (purged errors)
[2026-01-09 20:40:12] 2026-01-10 01:39:35,277 | INFO     | overall cleanup function is called
[2026-01-09 20:40:12] 2026-01-10 01:39:36,288 | INFO     | --- collectZombieJob: --- 10, [1031404]
[2026-01-09 20:40:12] 2026-01-10 01:39:36,289 | INFO     | zombie collector waiting for pid 1031404
[2026-01-09 20:40:12] 2026-01-10 01:39:36,289 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:40:12] 2026-01-10 01:39:36,289 | INFO     | collected zombie processes
[2026-01-09 20:40:12] 2026-01-10 01:39:36,289 | INFO     | will attempt to kill all subprocesses of pid=1031404
[2026-01-09 20:40:12] 2026-01-10 01:39:38,417 | INFO     | process IDs to be killed: [1031404] (in reverse order)
[2026-01-09 20:40:12] 2026-01-10 01:39:38,808 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:40:12] 2026-01-10 01:39:38,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:40:12] 2026-01-10 01:39:38,919 | INFO     | did not find any defunct processes belonging to 1031404
[2026-01-09 20:40:12] 2026-01-10 01:39:38,974 | INFO     | did not find any defunct processes belonging to 1031404
[2026-01-09 20:40:12] 2026-01-10 01:39:38,974 | INFO     | ready for new job
[2026-01-09 20:40:12] 2026-01-10 01:39:38,974 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:40:12] 2026-01-10 01:39:38,976 | INFO     | ***************************************
[2026-01-09 20:40:12] 2026-01-10 01:39:38,976 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:40:12] 2026-01-10 01:39:38,976 | INFO     | ***************************************
[2026-01-09 20:40:12] 2026-01-10 01:39:38,977 | INFO     | 
[2026-01-09 20:40:12] 2026-01-10 01:39:38,981 | INFO     | architecture information:
[2026-01-09 20:40:12] 2026-01-10 01:39:38,981 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:40:12] 2026-01-10 01:39:39,022 | INFO     | cat /etc/os-release:
[2026-01-09 20:40:12] NAME="CentOS Linux"
[2026-01-09 20:40:12] VERSION="7 (Core)"
[2026-01-09 20:40:12] ID="centos"
[2026-01-09 20:40:12] ID_LIKE="rhel fedora"
[2026-01-09 20:40:12] VERSION_ID="7"
[2026-01-09 20:40:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:40:12] ANSI_COLOR="0;31"
[2026-01-09 20:40:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:40:12] HOME_URL="https://www.centos.org/"
[2026-01-09 20:40:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:40:12] 
[2026-01-09 20:40:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:40:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:40:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:40:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:40:12] 
[2026-01-09 20:40:12] 2026-01-10 01:39:39,022 | INFO     | ***************************************
[2026-01-09 20:40:12] 2026-01-10 01:39:39,526 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 20:40:12] 2026-01-10 01:39:39,636 | INFO     | sufficient remaining disk space (126345019392 B)
[2026-01-09 20:40:12] 2026-01-10 01:39:39,636 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:40:12] 2026-01-10 01:39:39,636 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:40:12] 2026-01-10 01:39:39,637 | INFO     | update_server=False
[2026-01-09 20:40:12] 2026-01-10 01:39:39,637 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:40:12] 2026-01-10 01:39:39,637 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:40:12] 2026-01-10 01:39:39,839 | INFO     | all payload control threads have been joined
[2026-01-09 20:40:12] 2026-01-10 01:39:39,919 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:40:12] 2026-01-10 01:39:40,041 | INFO     | all data control threads have been joined
[2026-01-09 20:40:12] 2026-01-10 01:39:40,593 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:40:12] 2026-01-10 01:39:40,594 | INFO     | aborting loop
[2026-01-09 20:40:12] 2026-01-10 01:39:40,643 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:40,694 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:40,845 | INFO     | [payload] control thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:40,925 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:41,047 | INFO     | [data] control thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:41,151 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:41,241 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:41,241 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:41,278 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:41,282 | INFO     | [job] validate thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:41,324 | INFO     | all job control threads have been joined
[2026-01-09 20:40:12] 2026-01-10 01:39:41,599 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:41,644 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:41,796 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:41,801 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:42,335 | INFO     | [job] control thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:39:42,501 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:40:12] 2026-01-10 01:39:46,530 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:40:12] 2026-01-10 01:40:03,668 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:40:12] 2026-01-10 01:40:05,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139659171473216)>', '<ExcThread(monitor, started 139658814011136)>']
[2026-01-09 20:40:12] 2026-01-10 01:40:09,005 | INFO     | PID=993633 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 20:40:12] 2026-01-10 01:40:09,005 | INFO     | .. there are 25 such processes running
[2026-01-09 20:40:12] 2026-01-10 01:40:09,032 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:40:12] 2026-01-10 01:40:09,032 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:40:12] 2026-01-10 01:40:09,032 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:40:12] 2026-01-10 01:40:09,032 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:40:12] 2026-01-10 01:40:09,032 | INFO     | [monitor] control thread has ended
[2026-01-09 20:40:12] 2026-01-10 01:40:10,596 | INFO     | all workflow threads have been joined
[2026-01-09 20:40:12] 2026-01-10 01:40:10,597 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:40:12] 2026-01-10 01:40:10,597 | INFO     | traces error code: 0
[2026-01-09 20:40:12] 2026-01-10 01:40:10,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:40:12] 2026-01-10 01:40:10,915 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:40:12] 2026-01-10 01:40:10,959 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:40:12] 2026-01-10 01:40:10,998 [wrapper] pilotpid: 993633
[2026-01-09 20:40:12] 2026-01-10 01:40:11,026 [wrapper] Pilot exit status: 0
[2026-01-09 20:40:12] 2026-01-10 01:40:11,173 [wrapper] pandaids: 6963383735 6963383735
[2026-01-09 20:40:12] 2026-01-10 01:40:11,736 [wrapper] cleanup supervisor_pilot 1976887 993634
[2026-01-09 20:40:12] 2026-01-10 01:40:11,764 [wrapper] Test setup, not cleaning
[2026-01-09 20:40:12] 2026-01-10 01:40:11,791 [wrapper] apfmon messages muted
[2026-01-09 20:40:12] 2026-01-10 01:40:11,820 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:40:12] 2026-01-10 01:40:11,854 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:40:12]  *** Error codes and diagnostics ***
[2026-01-09 20:40:12]     "exeErrorCode": 0,
[2026-01-09 20:40:12]     "exeErrorDiag": "",
[2026-01-09 20:40:12]     "pilotErrorCode": 0,
[2026-01-09 20:40:12]     "pilotErrorDiag": "",
[2026-01-09 20:40:12]  *** Listing of results directory ***
[2026-01-09 20:40:12] total 671568
[2026-01-09 20:40:12] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:13 pilot3.tar.gz
[2026-01-09 20:40:12] -rwx------. 1 boincer umatlas     36322 Jan  9 02:15 runpilot2-wrapper.sh
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:16 queuedata.json
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas       100 Jan  9 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:40:12] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 17:08 run_atlas
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas       105 Jan  9 17:08 job.xml
[2026-01-09 20:40:12] -rw-r--r--. 3 boincer umatlas 250394591 Jan  9 17:08 EVNT.47929286._000032.pool.root.1
[2026-01-09 20:40:12] -rw-r--r--. 3 boincer umatlas 250394591 Jan  9 17:08 ATLAS.root_0
[2026-01-09 20:40:12] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:08 start_atlas.sh
[2026-01-09 20:40:12] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 17:08 shared
[2026-01-09 20:40:12] -rw-r--r--. 2 boincer umatlas    592411 Jan  9 17:08 input.tar.gz
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas         0 Jan  9 17:08 boinc_lockfile
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas      2548 Jan  9 17:49 pandaJob.out
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas        57 Jan  9 17:49 setup.sh.local
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas    989375 Jan  9 17:49 agis_schedconf.cvmfs.json
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas 179363847 Jan  9 20:37 HITS.47929288._002280.pool.root.1
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas       530 Jan  9 20:37 boinc_task_state.xml
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas      6956 Jan  9 20:38 init_data.xml
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas      1048 Jan  9 20:39 memory_monitor_summary.json
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas   1516240 Jan  9 20:39 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas    413606 Jan  9 20:39 log.47929288._002280.job.log.tgz.1
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas      7794 Jan  9 20:39 heartbeat.json
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas        96 Jan  9 20:40 pilot_heartbeat.json
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:40 boinc_mmap_file
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas        27 Jan  9 20:40 wrapper_checkpoint.txt
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas      4824 Jan  9 20:40 pilotlog.txt
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas   1390747 Jan  9 20:40 log.47929288._002280.job.log.1
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas       357 Jan  9 20:40 output.list
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:40 runtime_log
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas   1822720 Jan  9 20:40 result.tar.gz
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas      9428 Jan  9 20:40 runtime_log.err
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas       784 Jan  9 20:40 3t6MDmUtLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm7MhKDmYjSTmn.diag
[2026-01-09 20:40:12] -rw-r--r--. 1 boincer umatlas     20545 Jan  9 20:40 stderr.txt
[2026-01-09 20:40:12] HITS file was successfully produced:
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas 179363847 Jan  9 20:37 shared/HITS.pool.root.1
[2026-01-09 20:40:12]  *** Contents of shared directory: ***
[2026-01-09 20:40:12] total 422076
[2026-01-09 20:40:12] -rw-r--r--. 3 boincer umatlas 250394591 Jan  9 17:08 ATLAS.root_0
[2026-01-09 20:40:12] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:08 start_atlas.sh
[2026-01-09 20:40:12] -rw-r--r--. 2 boincer umatlas    592411 Jan  9 17:08 input.tar.gz
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas 179363847 Jan  9 20:37 HITS.pool.root.1
[2026-01-09 20:40:12] -rw-------. 1 boincer umatlas   1822720 Jan  9 20:40 result.tar.gz
20:40:14 (971533): run_atlas exited; CPU time 31400.436369
20:40:14 (971533): called boinc_finish(0)

</stderr_txt>
]]>

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