Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
08:11:14 (30743): wrapper (7.7.26015): starting
08:11:14 (30743): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 08:11:14] Arguments: --nthreads 8
[2026-01-10 08:11:14] Threads: 8
[2026-01-10 08:11:14] Checking for CVMFS
[2026-01-10 08:11:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 08:11:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 08:11:16] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 08:11:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 08:11:18] 2.11.2.0 20308 36537 129132 154971 2 60 19640823 25165824 899 130560 0 17581815 99.821 11208752 2639 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 08:11:18] CVMFS is ok
[2026-01-10 08:11:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 08:11:18] Checking for apptainer binary...
[2026-01-10 08:11:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 08:11:18] Running /usr/bin/apptainer --version
[2026-01-10 08:11:18] apptainer version 1.3.2-1.el7
[2026-01-10 08:11:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 08:11:34] cg-vwn476.simple-grid.lan
[2026-01-10 08:11:34] apptainer works
[2026-01-10 08:11:34] Set ATHENA_PROC_NUMBER=8
[2026-01-10 08:11:34] Set ATHENA_CORE_NUMBER=8
[2026-01-10 08:11:34] Starting ATLAS job with PandaID=6963381648
[2026-01-10 08:11:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 08:03:37]  *** The last 200 lines of the pilot log: ***
[2026-01-11 08:03:37] 2026-01-11 07:02:56,380 | INFO     | payload log (log.EVNTtoHITS) within allowed size limit (2147483648 B): 3805180 B
[2026-01-11 08:03:37] 2026-01-11 07:02:56,380 | INFO     | payload log (log.HITSMergeAthenaMP0) within allowed size limit (2147483648 B): 212643 B
[2026-01-11 08:03:37] 2026-01-11 07:02:56,380 | INFO     | payload log (payload.stdout) within allowed size limit (2147483648 B): 14004 B
[2026-01-11 08:03:37] 2026-01-11 07:02:56,380 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-11 08:03:37] 2026-01-11 07:02:56,931 | INFO     | time since job start (85613s) is within the limit (349056.0s)
[2026-01-11 08:03:37] 2026-01-11 07:02:58,936 | INFO     | time since job start (85615s) is within the limit (349056.0s)
[2026-01-11 08:03:37] 2026-01-11 07:03:00,942 | INFO     | time since job start (85617s) is within the limit (349056.0s)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,214 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 08:03:37] 2026-01-11 07:03:02,219 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-11 08:03:37] 2026-01-11 07:03:02,222 | INFO     | using path: /var/lib/boinc/slots/11/PanDA_Pilot-6963381648/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,223 | INFO     | extracted standard info from prmon json
[2026-01-11 08:03:37] 2026-01-11 07:03:02,223 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 08:03:37] 2026-01-11 07:03:02,223 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 08:03:37] 2026-01-11 07:03:02,250 | INFO     | fitting pss+swap vs Time
[2026-01-11 08:03:37] 2026-01-11 07:03:02,253 | INFO     | sum of square deviations: 841784608940.9646
[2026-01-11 08:03:37] 2026-01-11 07:03:02,259 | INFO     | sufficient remaining disk space (496257466368 B)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,260 | INFO     | work directory size check will use 4404019200 B as a max limit (20% grace limit added, divider=1)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,311 | INFO     | size of work directory /var/lib/boinc/slots/11/PanDA_Pilot-6963381648: 8317761 B (within 4404019200 B limit)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,312 | INFO     | pfn file=/var/lib/boinc/slots/11/PanDA_Pilot-6963381648/HITS.47962010._001708.pool.root.1 does not exist (skip from workdir size calculation)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,312 | INFO     | total size of present files: 0 B (workdir size: 8317761 B)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,312 | INFO     | output file size check: skipping output file /var/lib/boinc/slots/11/PanDA_Pilot-6963381648/HITS.47962010._001708.pool.root.1 since it does not exist
[2026-01-11 08:03:37] 2026-01-11 07:03:02,321 | INFO     | sum of deviations: 4185485634928.488
[2026-01-11 08:03:37] 2026-01-11 07:03:02,321 | INFO     | mean x: 1768072429.005018
[2026-01-11 08:03:37] 2026-01-11 07:03:02,322 | INFO     | mean y: 2800944.5017921147
[2026-01-11 08:03:37] 2026-01-11 07:03:02,322 | INFO     | intersect: -8788333598.126331
[2026-01-11 08:03:37] 2026-01-11 07:03:02,324 | INFO     | chi2: 30.513557478387025
[2026-01-11 08:03:37] 2026-01-11 07:03:02,326 | INFO     | sum of square deviations: 832765993023.3958
[2026-01-11 08:03:37] 2026-01-11 07:03:02,382 | INFO     | sum of deviations: 4670767532754.35
[2026-01-11 08:03:37] 2026-01-11 07:03:02,391 | INFO     | mean x: 1768072276.5086331
[2026-01-11 08:03:37] 2026-01-11 07:03:02,391 | INFO     | mean y: 2809150.221582734
[2026-01-11 08:03:37] 2026-01-11 07:03:02,391 | INFO     | intersect: -9913847694.395254
[2026-01-11 08:03:37] 2026-01-11 07:03:02,393 | INFO     | chi2: 26.952102602388358
[2026-01-11 08:03:37] 2026-01-11 07:03:02,393 | INFO     | current chi2=26.952102602388358 (change=11.671713068924431 %)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,393 | INFO     | right removable region: 1389
[2026-01-11 08:03:37] 2026-01-11 07:03:02,395 | INFO     | sum of square deviations: 832765137803.3961
[2026-01-11 08:03:37] 2026-01-11 07:03:02,447 | INFO     | sum of deviations: 3591058025794.559
[2026-01-11 08:03:37] 2026-01-11 07:03:02,448 | INFO     | mean x: 1768072581.5086331
[2026-01-11 08:03:37] 2026-01-11 07:03:02,448 | INFO     | mean y: 2810995.245323741
[2026-01-11 08:03:37] 2026-01-11 07:03:02,448 | INFO     | intersect: -7621488997.380986
[2026-01-11 08:03:37] 2026-01-11 07:03:02,449 | INFO     | chi2: 25.31924937295663
[2026-01-11 08:03:37] 2026-01-11 07:03:02,450 | INFO     | current chi2=25.31924937295663 (change=17.02295154902722 %)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,450 | INFO     | left removable region: 10
[2026-01-11 08:03:37] 2026-01-11 07:03:02,451 | INFO     | sum of square deviations: 813150576476.6161
[2026-01-11 08:03:37] 2026-01-11 07:03:02,503 | INFO     | sum of deviations: 3621241299123.7476
[2026-01-11 08:03:37] 2026-01-11 07:03:02,503 | INFO     | mean x: 1768072551.0166788
[2026-01-11 08:03:37] 2026-01-11 07:03:02,504 | INFO     | mean y: 2830490.793328499
[2026-01-11 08:03:37] 2026-01-11 07:03:02,504 | INFO     | intersect: -7871009271.24833
[2026-01-11 08:03:37] 2026-01-11 07:03:02,505 | INFO     | chi2: 16.54643958328803
[2026-01-11 08:03:37] 2026-01-11 07:03:02,506 | INFO     | current memory leak: 4.45 B/s (using 1379 data points, chi2=16.55)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,508 | INFO     | could have reported an average CPU frequency of 2249 MHz (47 samples)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,508 | INFO     | ..............................
[2026-01-11 08:03:37] 2026-01-11 07:03:02,508 | INFO     | . Timing measurements:
[2026-01-11 08:03:37] 2026-01-11 07:03:02,509 | INFO     | . get job = 0 s
[2026-01-11 08:03:37] 2026-01-11 07:03:02,509 | INFO     | . initial setup = 26 s
[2026-01-11 08:03:37] 2026-01-11 07:03:02,509 | INFO     | . payload setup = 165 s
[2026-01-11 08:03:37] 2026-01-11 07:03:02,509 | INFO     | . stage-in = 0 s
[2026-01-11 08:03:37] 2026-01-11 07:03:02,509 | INFO     | . payload execution = 85220 s
[2026-01-11 08:03:37] 2026-01-11 07:03:02,509 | INFO     | . stage-out = 2 s
[2026-01-11 08:03:37] 2026-01-11 07:03:02,509 | INFO     | . log creation = 0 s
[2026-01-11 08:03:37] 2026-01-11 07:03:02,509 | INFO     | ..............................
[2026-01-11 08:03:37] 2026-01-11 07:03:02,678 | INFO     | number of running child processes to parent process 8544: 1
[2026-01-11 08:03:37] 2026-01-11 07:03:02,678 | INFO     | maximum number of monitored processes: 16
[2026-01-11 08:03:37] 2026-01-11 07:03:02,678 | INFO     | aborting job monitoring since job object (job id=6963381648) has expired
[2026-01-11 08:03:37] 2026-01-11 07:03:02,710 | INFO     | 
[2026-01-11 08:03:37] 2026-01-11 07:03:02,710 | INFO     | job summary report
[2026-01-11 08:03:37] 2026-01-11 07:03:02,710 | INFO     | --------------------------------------------------
[2026-01-11 08:03:37] 2026-01-11 07:03:02,710 | INFO     | PanDA job id: 6963381648
[2026-01-11 08:03:37] 2026-01-11 07:03:02,711 | INFO     | task id: 47962010
[2026-01-11 08:03:37] 2026-01-11 07:03:02,711 | INFO     | errors: (none)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,711 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 08:03:37] 2026-01-11 07:03:02,711 | INFO     | pilot state: finished 
[2026-01-11 08:03:37] 2026-01-11 07:03:02,711 | INFO     | transexitcode: 0
[2026-01-11 08:03:37] 2026-01-11 07:03:02,711 | INFO     | exeerrorcode: 0
[2026-01-11 08:03:37] 2026-01-11 07:03:02,711 | INFO     | exeerrordiag: 
[2026-01-11 08:03:37] 2026-01-11 07:03:02,711 | INFO     | exitcode: 0
[2026-01-11 08:03:37] 2026-01-11 07:03:02,711 | INFO     | exitmsg: OK
[2026-01-11 08:03:37] 2026-01-11 07:03:02,711 | INFO     | cpuconsumptiontime: 319420 s
[2026-01-11 08:03:37] 2026-01-11 07:03:02,712 | INFO     | nevents: 900
[2026-01-11 08:03:37] 2026-01-11 07:03:02,712 | INFO     | neventsw: 0
[2026-01-11 08:03:37] 2026-01-11 07:03:02,712 | INFO     | pid: 8544
[2026-01-11 08:03:37] 2026-01-11 07:03:02,712 | INFO     | pgrp: 8544
[2026-01-11 08:03:37] 2026-01-11 07:03:02,712 | INFO     | corecount: 8
[2026-01-11 08:03:37] 2026-01-11 07:03:02,712 | INFO     | event service: False
[2026-01-11 08:03:37] 2026-01-11 07:03:02,712 | INFO     | sizes: {0: 2283796, 1: 2284653, 2: 2284681, 12: 2284681, 23: 2284709, 34: 2284737, 44: 2284893, 55: 2284921, 66: 2284949, 77: 2284977, 87: 2285033, 98: 2285341, 10
[2026-01-11 08:03:37] 2026-01-11 07:03:02,712 | INFO     | --------------------------------------------------
[2026-01-11 08:03:37] 2026-01-11 07:03:02,712 | INFO     | 
[2026-01-11 08:03:37] 2026-01-11 07:03:02,712 | INFO     | executing command: ls -lF /var/lib/boinc/slots/11
[2026-01-11 08:03:37] 2026-01-11 07:03:02,766 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,767 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,767 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,767 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,767 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,767 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,767 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,767 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,767 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,768 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,768 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,768 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,768 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,768 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,768 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,768 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,768 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,769 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,769 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,769 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 08:03:37] 2026-01-11 07:03:02,769 | INFO     | job 6963381648 has completed (purged errors)
[2026-01-11 08:03:37] 2026-01-11 07:03:02,769 | INFO     | overall cleanup function is called
[2026-01-11 08:03:37] 2026-01-11 07:03:03,785 | INFO     | --- collectZombieJob: --- 10, [8544]
[2026-01-11 08:03:37] 2026-01-11 07:03:03,785 | INFO     | zombie collector waiting for pid 8544
[2026-01-11 08:03:37] 2026-01-11 07:03:03,785 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 08:03:37] 2026-01-11 07:03:03,786 | INFO     | collected zombie processes
[2026-01-11 08:03:37] 2026-01-11 07:03:03,786 | INFO     | will attempt to kill all subprocesses of pid=8544
[2026-01-11 08:03:37] 2026-01-11 07:03:03,847 | INFO     | process IDs to be killed: [8544] (in reverse order)
[2026-01-11 08:03:37] 2026-01-11 07:03:03,897 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 08:03:37] 2026-01-11 07:03:03,897 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 08:03:37] 2026-01-11 07:03:03,899 | INFO     | did not find any defunct processes belonging to 8544
[2026-01-11 08:03:37] 2026-01-11 07:03:03,901 | INFO     | did not find any defunct processes belonging to 8544
[2026-01-11 08:03:37] 2026-01-11 07:03:03,901 | INFO     | ready for new job
[2026-01-11 08:03:37] 2026-01-11 07:03:03,901 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 08:03:37] 2026-01-11 07:03:03,907 | INFO     | ***************************************
[2026-01-11 08:03:37] 2026-01-11 07:03:03,907 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 08:03:37] 2026-01-11 07:03:03,907 | INFO     | ***************************************
[2026-01-11 08:03:37] 2026-01-11 07:03:03,907 | INFO     | 
[2026-01-11 08:03:37] 2026-01-11 07:03:03,908 | INFO     | pilot is running in a VM
[2026-01-11 08:03:37] 2026-01-11 07:03:03,908 | INFO     | architecture information:
[2026-01-11 08:03:37] 2026-01-11 07:03:03,909 | INFO     | executing command: cat /etc/os-release
[2026-01-11 08:03:37] 2026-01-11 07:03:03,933 | INFO     | cat /etc/os-release:
[2026-01-11 08:03:37] NAME="CentOS Linux"
[2026-01-11 08:03:37] VERSION="7 (Core)"
[2026-01-11 08:03:37] ID="centos"
[2026-01-11 08:03:37] ID_LIKE="rhel fedora"
[2026-01-11 08:03:37] VERSION_ID="7"
[2026-01-11 08:03:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 08:03:37] ANSI_COLOR="0;31"
[2026-01-11 08:03:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 08:03:37] HOME_URL="https://www.centos.org/"
[2026-01-11 08:03:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 08:03:37] 
[2026-01-11 08:03:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 08:03:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 08:03:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 08:03:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 08:03:37] 
[2026-01-11 08:03:37] 2026-01-11 07:03:03,933 | INFO     | ***************************************
[2026-01-11 08:03:37] 2026-01-11 07:03:04,436 | INFO     | executing command: df -mP /var/lib/boinc/slots/11
[2026-01-11 08:03:37] 2026-01-11 07:03:04,470 | INFO     | sufficient remaining disk space (496277389312 B)
[2026-01-11 08:03:37] 2026-01-11 07:03:04,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 08:03:37] 2026-01-11 07:03:04,471 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 08:03:37] 2026-01-11 07:03:04,471 | INFO     | update_server=False
[2026-01-11 08:03:37] 2026-01-11 07:03:04,471 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 08:03:37] 2026-01-11 07:03:04,471 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 08:03:37] 2026-01-11 07:03:04,471 | INFO     | aborting loop
[2026-01-11 08:03:37] 2026-01-11 07:03:04,472 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 08:03:37] 2026-01-11 07:03:04,472 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 08:03:37] 2026-01-11 07:03:04,972 | INFO     | all payload control threads have been joined
[2026-01-11 08:03:37] 2026-01-11 07:03:05,075 | INFO     | all job control threads have been joined
[2026-01-11 08:03:37] 2026-01-11 07:03:05,085 | INFO     | all data control threads have been joined
[2026-01-11 08:03:37] 2026-01-11 07:03:05,477 | INFO     | [job] retrieve thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:05,478 | INFO     | [job] job monitor thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:05,478 | INFO     | [job] queue monitor thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:05,495 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:05,650 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:05,978 | INFO     | [payload] control thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:06,081 | INFO     | [job] control thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:06,091 | INFO     | [data] control thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:06,261 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:06,408 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 08:03:37] 2026-01-11 07:03:06,478 | INFO     | [data] copytool_out thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:06,500 | INFO     | [job] validate thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:06,583 | INFO     | [payload] validate_post thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:06,756 | INFO     | [payload] failed_post thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:06,782 | INFO     | [data] copytool_in thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:10,414 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:14,697 | INFO     | job.realtimelogging is not enabled
[2026-01-11 08:03:37] 2026-01-11 07:03:15,703 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 08:03:37] 2026-01-11 07:03:32,336 | INFO     | [monitor] cgroup control has ended
[2026-01-11 08:03:37] 2026-01-11 07:03:32,519 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140287982344000)>', '<ExcThread(monitor, started 140287229806336)>']
[2026-01-11 08:03:37] 2026-01-11 07:03:34,034 | INFO     | PID=2086 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 08:03:37] 2026-01-11 07:03:34,034 | INFO     | .. there are 2 such processes running
[2026-01-11 08:03:37] 2026-01-11 07:03:34,035 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 08:03:37] 2026-01-11 07:03:34,035 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 08:03:37] 2026-01-11 07:03:34,035 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 08:03:37] 2026-01-11 07:03:34,035 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 08:03:37] 2026-01-11 07:03:34,036 | INFO     | [monitor] control thread has ended
[2026-01-11 08:03:37] 2026-01-11 07:03:37,544 | INFO     | all workflow threads have been joined
[2026-01-11 08:03:37] 2026-01-11 07:03:37,545 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 08:03:37] 2026-01-11 07:03:37,545 | INFO     | traces error code: 0
[2026-01-11 08:03:37] 2026-01-11 07:03:37,545 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 08:03:37] 2026-01-11 07:03:37,679 [wrapper] ==== pilot stdout END ====
[2026-01-11 08:03:37] 2026-01-11 07:03:37,686 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 08:03:37] 2026-01-11 07:03:37,692 [wrapper] pilotpid: 2086
[2026-01-11 08:03:37] 2026-01-11 07:03:37,696 [wrapper] Pilot exit status: 0
[2026-01-11 08:03:37] 2026-01-11 07:03:37,718 [wrapper] pandaids: 6963381648
[2026-01-11 08:03:37] 2026-01-11 07:03:37,751 [wrapper] cleanup supervisor_pilot 13080 2087
[2026-01-11 08:03:37] 2026-01-11 07:03:37,755 [wrapper] Test setup, not cleaning
[2026-01-11 08:03:37] 2026-01-11 07:03:37,763 [wrapper] apfmon messages muted
[2026-01-11 08:03:37] 2026-01-11 07:03:37,768 [wrapper] ==== wrapper stdout END ====
[2026-01-11 08:03:37] 2026-01-11 07:03:37,772 [wrapper] ==== wrapper stderr END ====
[2026-01-11 08:03:37]  *** Error codes and diagnostics ***
[2026-01-11 08:03:37]     "exeErrorCode": 0,
[2026-01-11 08:03:37]     "exeErrorDiag": "",
[2026-01-11 08:03:37]     "pilotErrorCode": 0,
[2026-01-11 08:03:37]     "pilotErrorDiag": "",
[2026-01-11 08:03:37]  *** Listing of results directory ***
[2026-01-11 08:03:37] total 1182508
[2026-01-11 08:03:37] -rwx------. 1 boinc boinc     36322 Jan  9 08:17 runpilot2-wrapper.sh
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc    579449 Jan  9 08:20 pilot3.tar.gz
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc      5112 Jan  9 08:21 queuedata.json
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc       100 Jan 10 08:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 08:03:37] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 08:11 run_atlas
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc       105 Jan 10 08:11 job.xml
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc      6392 Jan 10 08:11 init_data.xml
[2026-01-11 08:03:37] -rw-r--r--. 2 boinc boinc 392678259 Jan 10 08:11 EVNT.47962006._000117.pool.root.1
[2026-01-11 08:03:37] -rw-r--r--. 2 boinc boinc     15847 Jan 10 08:11 start_atlas.sh
[2026-01-11 08:03:37] drwxrwx--x. 2 boinc boinc        68 Jan 10 08:11 shared
[2026-01-11 08:03:37] -rw-r--r--. 2 boinc boinc    592620 Jan 10 08:11 input.tar.gz
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc         0 Jan 10 08:11 boinc_lockfile
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc      2893 Jan 10 08:11 pandaJob.out
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc    989374 Jan 10 08:15 agis_schedconf.cvmfs.json
[2026-01-11 08:03:37] drwx------. 5 boinc boinc      4096 Jan 10 08:16 pilot3
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc       533 Jan 11 07:39 boinc_task_state.xml
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc 786420288 Jan 11 08:02 HITS.47962010._001708.pool.root.1
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc      1031 Jan 11 08:02 memory_monitor_summary.json
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc   1516240 Jan 11 08:02 agis_ddmendpoints.agis.ALL.json
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc   2462520 Jan 11 08:02 log.47962010._001708.job.log.tgz.1
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc      8631 Jan 11 08:03 heartbeat.json
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc      8192 Jan 11 08:03 boinc_mmap_file
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc        95 Jan 11 08:03 pilot_heartbeat.json
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc        29 Jan 11 08:03 wrapper_checkpoint.txt
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc      4956 Jan 11 08:03 pilotlog.txt
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc  11478196 Jan 11 08:03 log.47962010._001708.job.log.1
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc       353 Jan 11 08:03 output.list
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc       620 Jan 11 08:03 runtime_log
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc  13957120 Jan 11 08:03 result.tar.gz
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc      8833 Jan 11 08:03 runtime_log.err
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc       662 Jan 11 08:03 1MfLDmRvLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFdmKDmVCYRIo.diag
[2026-01-11 08:03:37] -rw-r--r--. 1 boinc boinc     21492 Jan 11 08:03 stderr.txt
[2026-01-11 08:03:37] HITS file was successfully produced:
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc 786420288 Jan 11 08:02 shared/HITS.pool.root.1
[2026-01-11 08:03:37]  *** Contents of shared directory: ***
[2026-01-11 08:03:37] total 1165696
[2026-01-11 08:03:37] -rw-r--r--. 2 boinc boinc 392678259 Jan 10 08:11 ATLAS.root_0
[2026-01-11 08:03:37] -rw-r--r--. 2 boinc boinc     15847 Jan 10 08:11 start_atlas.sh
[2026-01-11 08:03:37] -rw-r--r--. 2 boinc boinc    592620 Jan 10 08:11 input.tar.gz
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc 786420288 Jan 11 08:02 HITS.pool.root.1
[2026-01-11 08:03:37] -rw-------. 1 boinc boinc  13957120 Jan 11 08:03 result.tar.gz
08:03:39 (30743): run_atlas exited; CPU time 319745.931533
08:03:39 (30743): called boinc_finish(0)

</stderr_txt>
]]>

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