Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
07:50:02 (21371): wrapper (7.7.26015): starting
07:50:02 (21371): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 07:50:02] Arguments: --nthreads 8
[2026-01-10 07:50:02] Threads: 8
[2026-01-10 07:50:02] Checking for CVMFS
[2026-01-10 07:50:03] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 07:50:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 07:50:04] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 07:50:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 07:50:05] 2.11.2.0 23879 36516 125312 154970 1 60 20491015 25165825 899 130560 0 8242631 99.634 10119013 1785 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 07:50:05] CVMFS is ok
[2026-01-10 07:50:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 07:50:05] Checking for apptainer binary...
[2026-01-10 07:50:05] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 07:50:05] Running /usr/bin/apptainer --version
[2026-01-10 07:50:06] apptainer version 1.3.2-1.el7
[2026-01-10 07:50:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 07:50:25] cg-vwn385.simple-grid.lan
[2026-01-10 07:50:25] apptainer works
[2026-01-10 07:50:25] Set ATHENA_PROC_NUMBER=8
[2026-01-10 07:50:25] Set ATHENA_CORE_NUMBER=8
[2026-01-10 07:50:25] Starting ATLAS job with PandaID=6963381416
[2026-01-10 07:50:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/12 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 10:21:50]  *** The last 200 lines of the pilot log: ***
[2026-01-11 10:21:50] 2026-01-11 09:21:02,037 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 10:21:50] 2026-01-11 09:21:02,253 | INFO     | time since job start (95185s) is within the limit (349056.0s)
[2026-01-11 10:21:50] 2026-01-11 09:21:03,370 | INFO     | PID=25141 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 10:21:50] 2026-01-11 09:21:03,371 | INFO     | .. there are 2 such processes running
[2026-01-11 10:21:50] 2026-01-11 09:21:04,372 | INFO     | time since job start (95187s) is within the limit (349056.0s)
[2026-01-11 10:21:50] 2026-01-11 09:21:04,542 | INFO     | monitor loop #6412: job 0:6963381416 is in state 'finished'
[2026-01-11 10:21:50] 2026-01-11 09:21:04,543 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 10:21:50] 2026-01-11 09:21:06,379 | INFO     | time since job start (95189s) is within the limit (349056.0s)
[2026-01-11 10:21:50] 2026-01-11 09:21:07,046 | INFO     | monitor loop #6413: job 0:6963381416 is in state 'finished'
[2026-01-11 10:21:50] 2026-01-11 09:21:07,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 10:21:50] 2026-01-11 09:21:08,386 | INFO     | time since job start (95191s) is within the limit (349056.0s)
[2026-01-11 10:21:50] 2026-01-11 09:21:09,558 | INFO     | monitor loop #6414: job 0:6963381416 is in state 'finished'
[2026-01-11 10:21:50] 2026-01-11 09:21:09,559 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 10:21:50] 2026-01-11 09:21:10,394 | INFO     | time since job start (95193s) is within the limit (349056.0s)
[2026-01-11 10:21:50] 2026-01-11 09:21:11,692 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 10:21:50] 2026-01-11 09:21:11,695 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-11 10:21:50] 2026-01-11 09:21:11,698 | INFO     | using path: /var/lib/boinc/slots/12/PanDA_Pilot-6963381416/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 10:21:50] 2026-01-11 09:21:11,698 | INFO     | extracted standard info from prmon json
[2026-01-11 10:21:50] 2026-01-11 09:21:11,698 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 10:21:50] 2026-01-11 09:21:11,699 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 10:21:50] 2026-01-11 09:21:11,729 | INFO     | fitting pss+swap vs Time
[2026-01-11 10:21:50] 2026-01-11 09:21:11,732 | INFO     | sum of square deviations: 1154711692043.2148
[2026-01-11 10:21:50] 2026-01-11 09:21:11,906 | INFO     | sum of deviations: 4448982283571.36
[2026-01-11 10:21:50] 2026-01-11 09:21:11,906 | INFO     | mean x: 1768075897.4864516
[2026-01-11 10:21:50] 2026-01-11 09:21:11,906 | INFO     | mean y: 2805203.2077419353
[2026-01-11 10:21:50] 2026-01-11 09:21:11,906 | INFO     | intersect: -6809404630.75345
[2026-01-11 10:21:50] 2026-01-11 09:21:11,908 | INFO     | chi2: 34.94588843192591
[2026-01-11 10:21:50] 2026-01-11 09:21:11,911 | INFO     | sum of square deviations: 1143573540235.8374
[2026-01-11 10:21:50] 2026-01-11 09:21:11,985 | INFO     | sum of deviations: 4967556125188.115
[2026-01-11 10:21:50] 2026-01-11 09:21:11,985 | INFO     | mean x: 1768075744.989644
[2026-01-11 10:21:50] 2026-01-11 09:21:11,985 | INFO     | mean y: 2812302.693851133
[2026-01-11 10:21:50] 2026-01-11 09:21:11,985 | INFO     | intersect: -7677511863.435892
[2026-01-11 10:21:50] 2026-01-11 09:21:11,987 | INFO     | chi2: 31.588434658075403
[2026-01-11 10:21:50] 2026-01-11 09:21:11,988 | INFO     | current chi2=31.588434658075403 (change=9.607578815432829 %)
[2026-01-11 10:21:50] 2026-01-11 09:21:11,988 | INFO     | right removable region: 1544
[2026-01-11 10:21:50] 2026-01-11 09:21:11,990 | INFO     | sum of square deviations: 1143572607545.8367
[2026-01-11 10:21:50] 2026-01-11 09:21:12,069 | INFO     | monitor loop #6415: job 0:6963381416 is in state 'finished'
[2026-01-11 10:21:50] 2026-01-11 09:21:12,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 10:21:50] 2026-01-11 09:21:12,073 | INFO     | sum of deviations: 3789115844236.383
[2026-01-11 10:21:50] 2026-01-11 09:21:12,074 | INFO     | mean x: 1768076049.989644
[2026-01-11 10:21:50] 2026-01-11 09:21:12,074 | INFO     | mean y: 2814237.273786408
[2026-01-11 10:21:50] 2026-01-11 09:21:12,074 | INFO     | intersect: -5855532605.44045
[2026-01-11 10:21:50] 2026-01-11 09:21:12,077 | INFO     | chi2: 29.84090530257432
[2026-01-11 10:21:50] 2026-01-11 09:21:12,077 | INFO     | current chi2=29.84090530257432 (change=14.608251094534403 %)
[2026-01-11 10:21:50] 2026-01-11 09:21:12,077 | INFO     | left removable region: 10
[2026-01-11 10:21:50] 2026-01-11 09:21:12,079 | INFO     | sum of square deviations: 1119320367011.4834
[2026-01-11 10:21:50] 2026-01-11 09:21:12,154 | INFO     | sum of deviations: 3809078887805.095
[2026-01-11 10:21:50] 2026-01-11 09:21:12,155 | INFO     | mean x: 1768076019.4967406
[2026-01-11 10:21:50] 2026-01-11 09:21:12,155 | INFO     | mean y: 2831424.4198174705
[2026-01-11 10:21:50] 2026-01-11 09:21:12,155 | INFO     | intersect: -6013981309.793935
[2026-01-11 10:21:50] 2026-01-11 09:21:12,157 | INFO     | chi2: 21.387675780002443
[2026-01-11 10:21:50] 2026-01-11 09:21:12,157 | INFO     | current memory leak: 3.40 B/s (using 1534 data points, chi2=21.39)
[2026-01-11 10:21:50] 2026-01-11 09:21:12,159 | INFO     | could have reported an average CPU frequency of 1999 MHz (52 samples)
[2026-01-11 10:21:50] 2026-01-11 09:21:12,159 | INFO     | ..............................
[2026-01-11 10:21:50] 2026-01-11 09:21:12,160 | INFO     | . Timing measurements:
[2026-01-11 10:21:50] 2026-01-11 09:21:12,160 | INFO     | . get job = 0 s
[2026-01-11 10:21:50] 2026-01-11 09:21:12,160 | INFO     | . initial setup = 8 s
[2026-01-11 10:21:50] 2026-01-11 09:21:12,160 | INFO     | . payload setup = 186 s
[2026-01-11 10:21:50] 2026-01-11 09:21:12,160 | INFO     | . stage-in = 0 s
[2026-01-11 10:21:50] 2026-01-11 09:21:12,160 | INFO     | . payload execution = 94682 s
[2026-01-11 10:21:50] 2026-01-11 09:21:12,160 | INFO     | . stage-out = 11 s
[2026-01-11 10:21:50] 2026-01-11 09:21:12,160 | INFO     | . log creation = 2 s
[2026-01-11 10:21:50] 2026-01-11 09:21:12,160 | INFO     | ..............................
[2026-01-11 10:21:50] 2026-01-11 09:21:12,401 | INFO     | time since job start (95195s) is within the limit (349056.0s)
[2026-01-11 10:21:50] 2026-01-11 09:21:12,539 | INFO     | 
[2026-01-11 10:21:50] 2026-01-11 09:21:12,540 | INFO     | job summary report
[2026-01-11 10:21:50] 2026-01-11 09:21:12,540 | INFO     | --------------------------------------------------
[2026-01-11 10:21:50] 2026-01-11 09:21:12,540 | INFO     | PanDA job id: 6963381416
[2026-01-11 10:21:50] 2026-01-11 09:21:12,540 | INFO     | task id: 47962010
[2026-01-11 10:21:50] 2026-01-11 09:21:12,540 | INFO     | errors: (none)
[2026-01-11 10:21:50] 2026-01-11 09:21:12,540 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 10:21:50] 2026-01-11 09:21:12,540 | INFO     | pilot state: finished 
[2026-01-11 10:21:50] 2026-01-11 09:21:12,540 | INFO     | transexitcode: 0
[2026-01-11 10:21:50] 2026-01-11 09:21:12,541 | INFO     | exeerrorcode: 0
[2026-01-11 10:21:50] 2026-01-11 09:21:12,541 | INFO     | exeerrordiag: 
[2026-01-11 10:21:50] 2026-01-11 09:21:12,541 | INFO     | exitcode: 0
[2026-01-11 10:21:50] 2026-01-11 09:21:12,541 | INFO     | exitmsg: OK
[2026-01-11 10:21:50] 2026-01-11 09:21:12,541 | INFO     | cpuconsumptiontime: 352805 s
[2026-01-11 10:21:50] 2026-01-11 09:21:12,541 | INFO     | nevents: 900
[2026-01-11 10:21:50] 2026-01-11 09:21:12,541 | INFO     | neventsw: 0
[2026-01-11 10:21:50] 2026-01-11 09:21:12,541 | INFO     | pid: 31639
[2026-01-11 10:21:50] 2026-01-11 09:21:12,541 | INFO     | pgrp: 31639
[2026-01-11 10:21:50] 2026-01-11 09:21:12,542 | INFO     | corecount: 8
[2026-01-11 10:21:50] 2026-01-11 09:21:12,542 | INFO     | event service: False
[2026-01-11 10:21:50] 2026-01-11 09:21:12,542 | INFO     | sizes: {0: 2284452, 1: 2284651, 12: 2284651, 23: 2284679, 33: 2284707, 44: 2284763, 55: 2284919, 66: 2284947, 76: 2284975, 87: 2285031, 98: 2285059, 104: 2285629, 
[2026-01-11 10:21:50] 2026-01-11 09:21:12,542 | INFO     | --------------------------------------------------
[2026-01-11 10:21:50] 2026-01-11 09:21:12,542 | INFO     | 
[2026-01-11 10:21:50] 2026-01-11 09:21:12,542 | INFO     | executing command: ls -lF /var/lib/boinc/slots/12
[2026-01-11 10:21:50] 2026-01-11 09:21:13,166 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,166 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,166 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,167 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,167 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,167 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,167 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,167 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,167 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,167 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,167 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,167 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,168 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,168 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,168 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,168 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,168 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,168 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 10:21:50] 2026-01-11 09:21:13,168 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,168 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 10:21:50] 2026-01-11 09:21:13,169 | INFO     | job 6963381416 has completed (purged errors)
[2026-01-11 10:21:50] 2026-01-11 09:21:13,169 | INFO     | overall cleanup function is called
[2026-01-11 10:21:50] 2026-01-11 09:21:14,191 | INFO     | --- collectZombieJob: --- 10, [31639]
[2026-01-11 10:21:50] 2026-01-11 09:21:14,192 | INFO     | zombie collector waiting for pid 31639
[2026-01-11 10:21:50] 2026-01-11 09:21:14,192 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 10:21:50] 2026-01-11 09:21:14,192 | INFO     | collected zombie processes
[2026-01-11 10:21:50] 2026-01-11 09:21:14,192 | INFO     | will attempt to kill all subprocesses of pid=31639
[2026-01-11 10:21:50] 2026-01-11 09:21:14,272 | INFO     | process IDs to be killed: [31639] (in reverse order)
[2026-01-11 10:21:50] 2026-01-11 09:21:15,230 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 10:21:50] 2026-01-11 09:21:15,230 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 10:21:50] 2026-01-11 09:21:15,233 | INFO     | did not find any defunct processes belonging to 31639
[2026-01-11 10:21:50] 2026-01-11 09:21:15,235 | INFO     | did not find any defunct processes belonging to 31639
[2026-01-11 10:21:50] 2026-01-11 09:21:15,235 | INFO     | ready for new job
[2026-01-11 10:21:50] 2026-01-11 09:21:15,235 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 10:21:50] 2026-01-11 09:21:15,241 | INFO     | ***************************************
[2026-01-11 10:21:50] 2026-01-11 09:21:15,241 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 10:21:50] 2026-01-11 09:21:15,241 | INFO     | ***************************************
[2026-01-11 10:21:50] 2026-01-11 09:21:15,241 | INFO     | 
[2026-01-11 10:21:50] 2026-01-11 09:21:15,242 | INFO     | pilot is running in a VM
[2026-01-11 10:21:50] 2026-01-11 09:21:15,242 | INFO     | architecture information:
[2026-01-11 10:21:50] 2026-01-11 09:21:15,252 | INFO     | executing command: cat /etc/os-release
[2026-01-11 10:21:50] 2026-01-11 09:21:15,635 | INFO     | cat /etc/os-release:
[2026-01-11 10:21:50] NAME="CentOS Linux"
[2026-01-11 10:21:50] VERSION="7 (Core)"
[2026-01-11 10:21:50] ID="centos"
[2026-01-11 10:21:50] ID_LIKE="rhel fedora"
[2026-01-11 10:21:50] VERSION_ID="7"
[2026-01-11 10:21:50] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 10:21:50] ANSI_COLOR="0;31"
[2026-01-11 10:21:50] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 10:21:50] HOME_URL="https://www.centos.org/"
[2026-01-11 10:21:50] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 10:21:50] 
[2026-01-11 10:21:50] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 10:21:50] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 10:21:50] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 10:21:50] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 10:21:50] 
[2026-01-11 10:21:50] 2026-01-11 09:21:15,635 | INFO     | ***************************************
[2026-01-11 10:21:50] 2026-01-11 09:21:16,139 | INFO     | executing command: df -mP /var/lib/boinc/slots/12
[2026-01-11 10:21:50] 2026-01-11 09:21:16,420 | INFO     | sufficient remaining disk space (496107520000 B)
[2026-01-11 10:21:50] 2026-01-11 09:21:16,420 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 10:21:50] 2026-01-11 09:21:16,420 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 10:21:50] 2026-01-11 09:21:16,421 | INFO     | update_server=False
[2026-01-11 10:21:50] 2026-01-11 09:21:16,421 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 10:21:50] 2026-01-11 09:21:16,421 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 10:21:50] 2026-01-11 09:21:16,425 | INFO     | aborting loop
[2026-01-11 10:21:50] 2026-01-11 09:21:16,421 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 10:21:50] 2026-01-11 09:21:16,963 | INFO     | all payload control threads have been joined
[2026-01-11 10:21:50] 2026-01-11 09:21:17,005 | INFO     | all data control threads have been joined
[2026-01-11 10:21:50] 2026-01-11 09:21:17,299 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 10:21:50] 2026-01-11 09:21:17,426 | INFO     | [job] retrieve thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:17,434 | INFO     | [job] job monitor thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:17,587 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:17,589 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:17,765 | INFO     | all job control threads have been joined
[2026-01-11 10:21:50] 2026-01-11 09:21:17,863 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 10:21:50] 2026-01-11 09:21:17,902 | INFO     | [job] validate thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:17,960 | INFO     | [payload] failed_post thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:17,969 | INFO     | [payload] control thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:18,011 | INFO     | [data] control thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:18,191 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:18,305 | INFO     | [job] queue monitor thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:18,437 | INFO     | [data] copytool_out thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:18,627 | INFO     | [data] copytool_in thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:18,771 | INFO     | [job] control thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:18,795 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:18,924 | INFO     | [payload] validate_post thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:21,872 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 10:21:50] 2026-01-11 09:21:24,076 | INFO     | [monitor] cgroup control has ended
[2026-01-11 10:21:50] 2026-01-11 09:21:25,322 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139709723043648)>', '<ExcThread(monitor, started 139708776576768)>']
[2026-01-11 10:21:50] 2026-01-11 09:21:30,348 | INFO     | all workflow threads have been joined
[2026-01-11 10:21:50] 2026-01-11 09:21:30,349 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 10:21:50] 2026-01-11 09:21:30,349 | INFO     | traces error code: 0
[2026-01-11 10:21:50] 2026-01-11 09:21:30,349 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 10:21:50] 2026-01-11 09:21:45,555 | INFO     | PID=25141 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 10:21:50] 2026-01-11 09:21:45,556 | INFO     | .. there are 2 such processes running
[2026-01-11 10:21:50] 2026-01-11 09:21:45,556 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 10:21:50] 2026-01-11 09:21:45,556 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 10:21:50] 2026-01-11 09:21:45,556 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 10:21:50] 2026-01-11 09:21:45,556 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 10:21:50] 2026-01-11 09:21:45,557 | INFO     | [monitor] control thread has ended
[2026-01-11 10:21:50] 2026-01-11 09:21:45,980 [wrapper] ==== pilot stdout END ====
[2026-01-11 10:21:50] 2026-01-11 09:21:46,070 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 10:21:50] 2026-01-11 09:21:46,189 [wrapper] pilotpid: 25141
[2026-01-11 10:21:50] 2026-01-11 09:21:46,286 [wrapper] Pilot exit status: 0
[2026-01-11 10:21:50] 2026-01-11 09:21:46,740 [wrapper] pandaids: 6963381416
[2026-01-11 10:21:50] 2026-01-11 09:21:47,604 [wrapper] cleanup supervisor_pilot 14103 25142
[2026-01-11 10:21:50] 2026-01-11 09:21:47,690 [wrapper] Test setup, not cleaning
[2026-01-11 10:21:50] 2026-01-11 09:21:47,741 [wrapper] apfmon messages muted
[2026-01-11 10:21:50] 2026-01-11 09:21:47,844 [wrapper] ==== wrapper stdout END ====
[2026-01-11 10:21:50] 2026-01-11 09:21:47,921 [wrapper] ==== wrapper stderr END ====
[2026-01-11 10:21:50]  *** Error codes and diagnostics ***
[2026-01-11 10:21:50]     "exeErrorCode": 0,
[2026-01-11 10:21:50]     "exeErrorDiag": "",
[2026-01-11 10:21:50]     "pilotErrorCode": 0,
[2026-01-11 10:21:50]     "pilotErrorDiag": "",
[2026-01-11 10:21:50]  *** Listing of results directory ***
[2026-01-11 10:21:50] total 1200732
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc    579449 Jan  9 08:13 pilot3.tar.gz
[2026-01-11 10:21:50] -rwx------. 1 boinc boinc     36322 Jan  9 08:15 runpilot2-wrapper.sh
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc      5112 Jan  9 08:16 queuedata.json
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc       100 Jan 10 07:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 10:21:50] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 07:50 run_atlas
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc       105 Jan 10 07:50 job.xml
[2026-01-11 10:21:50] -rw-r--r--. 2 boinc boinc 395791968 Jan 10 07:50 EVNT.47962006._000028.pool.root.1
[2026-01-11 10:21:50] -rw-r--r--. 2 boinc boinc     15847 Jan 10 07:50 start_atlas.sh
[2026-01-11 10:21:50] drwxrwx--x. 2 boinc boinc        68 Jan 10 07:50 shared
[2026-01-11 10:21:50] -rw-r--r--. 2 boinc boinc    592613 Jan 10 07:50 input.tar.gz
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc      6391 Jan 10 07:50 init_data.xml
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc         0 Jan 10 07:50 boinc_lockfile
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc      2892 Jan 10 07:50 pandaJob.out
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc    989374 Jan 10 07:54 agis_schedconf.cvmfs.json
[2026-01-11 10:21:50] drwx------. 5 boinc boinc      4096 Jan 10 07:54 pilot3
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc       533 Jan 11 09:50 boinc_task_state.xml
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc 799181011 Jan 11 10:18 HITS.47962010._001549.pool.root.1
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc      1033 Jan 11 10:19 memory_monitor_summary.json
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc   1516240 Jan 11 10:19 agis_ddmendpoints.agis.ALL.json
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc   2575095 Jan 11 10:19 log.47962010._001549.job.log.tgz.1
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc        95 Jan 11 10:21 pilot_heartbeat.json
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc      7937 Jan 11 10:21 heartbeat.json
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc      8192 Jan 11 10:21 boinc_mmap_file
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc        29 Jan 11 10:21 wrapper_checkpoint.txt
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc       820 Jan 11 10:21 pilotlog.txt
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc  12766905 Jan 11 10:21 log.47962010._001549.job.log.1
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc       353 Jan 11 10:21 output.list
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc       620 Jan 11 10:21 runtime_log
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc  15360000 Jan 11 10:21 result.tar.gz
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc       662 Jan 11 10:21 YP6KDmKtLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3WmKDmBGhgTm.diag
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc      8833 Jan 11 10:21 runtime_log.err
[2026-01-11 10:21:50] -rw-r--r--. 1 boinc boinc     21416 Jan 11 10:21 stderr.txt
[2026-01-11 10:21:50] HITS file was successfully produced:
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc 799181011 Jan 11 10:18 shared/HITS.pool.root.1
[2026-01-11 10:21:50]  *** Contents of shared directory: ***
[2026-01-11 10:21:50] total 1182564
[2026-01-11 10:21:50] -rw-r--r--. 2 boinc boinc 395791968 Jan 10 07:50 ATLAS.root_0
[2026-01-11 10:21:50] -rw-r--r--. 2 boinc boinc     15847 Jan 10 07:50 start_atlas.sh
[2026-01-11 10:21:50] -rw-r--r--. 2 boinc boinc    592613 Jan 10 07:50 input.tar.gz
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc 799181011 Jan 11 10:18 HITS.pool.root.1
[2026-01-11 10:21:50] -rw-------. 1 boinc boinc  15360000 Jan 11 10:21 result.tar.gz
10:21:52 (21371): run_atlas exited; CPU time 353318.618861
10:21:52 (21371): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN