Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:19:23 (5716): wrapper (7.7.26015): starting
02:19:23 (5716): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 02:19:23] Arguments: --nthreads 8
[2026-01-10 02:19:23] Threads: 8
[2026-01-10 02:19:23] Checking for CVMFS
[2026-01-10 02:19:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:19:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:19:23] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:19:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:19:23] 2.11.0.0 4199 129442 104160 154963 0 87 2868187 4096001 244 130560 2 11515486 99.712 7219356 475 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 02:19:23] CVMFS is ok
[2026-01-10 02:19:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:19:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:19:23] Further information can be found at the LHC@home message board.
[2026-01-10 02:19:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:19:23] Checking for apptainer binary...
[2026-01-10 02:19:23] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 02:19:23] apptainer is not installed, using version from CVMFS
[2026-01-10 02:19:23] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:19:23] WARNING: Environment variable TMPDIR already has value [/tmp/job_11009867/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node066
[2026-01-10 02:19:23] apptainer works
[2026-01-10 02:19:23] Set ATHENA_PROC_NUMBER=8
[2026-01-10 02:19:23] Set ATHENA_CORE_NUMBER=8
[2026-01-10 02:19:23] Starting ATLAS job with PandaID=6963378506
[2026-01-10 02:19:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11009867/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:05:01]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:05:01] 2026-01-10 06:04:44,844 | INFO     | monitor loop #1250: job 0:6963378506 is in state 'finished'
[2026-01-10 07:05:01] 2026-01-10 06:04:44,844 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,282 | INFO     | time since job start (17117s) is within the limit (349056.0s)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,473 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 07:05:01] 2026-01-10 06:04:45,477 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2527.78159375
[2026-01-10 07:05:01] 2026-01-10 06:04:45,483 | INFO     | using path: /tmp/job_11009867/atlas/pilot/slots/0/PanDA_Pilot-6963378506/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,483 | INFO     | extracted standard info from prmon json
[2026-01-10 07:05:01] 2026-01-10 06:04:45,483 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 07:05:01] 2026-01-10 06:04:45,483 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 07:05:01] 2026-01-10 06:04:45,486 | INFO     | fitting pss+swap vs Time
[2026-01-10 07:05:01] 2026-01-10 06:04:45,486 | INFO     | sum of square deviations: 6880054580.0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,487 | INFO     | sum of deviations: 586561310285.0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,487 | INFO     | mean x: 1768016526.0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,487 | INFO     | mean y: 3103712.5231316728
[2026-01-10 07:05:01] 2026-01-10 06:04:45,487 | INFO     | intersect: -150729725226.18185
[2026-01-10 07:05:01] 2026-01-10 06:04:45,487 | INFO     | chi2: 5.920598629086199
[2026-01-10 07:05:01] 2026-01-10 06:04:45,488 | INFO     | sum of square deviations: 6519285025.0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,489 | INFO     | sum of deviations: 630219554465.9998
[2026-01-10 07:05:01] 2026-01-10 06:04:45,489 | INFO     | mean x: 1768016373.5
[2026-01-10 07:05:01] 2026-01-10 06:04:45,489 | INFO     | mean y: 3121922.782608696
[2026-01-10 07:05:01] 2026-01-10 06:04:45,489 | INFO     | intersect: -170911094425.00818
[2026-01-10 07:05:01] 2026-01-10 06:04:45,489 | INFO     | chi2: 4.3010890709617415
[2026-01-10 07:05:01] 2026-01-10 06:04:45,489 | INFO     | current chi2=4.3010890709617415 (change=27.35381436208617 %)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,489 | INFO     | sum of square deviations: 6171352920.0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,490 | INFO     | sum of deviations: 589029864019.0002
[2026-01-10 07:05:01] 2026-01-10 06:04:45,490 | INFO     | mean x: 1768016221.0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,490 | INFO     | mean y: 3103866.841328413
[2026-01-10 07:05:01] 2026-01-10 06:04:45,490 | INFO     | intersect: -168746661012.756
[2026-01-10 07:05:01] 2026-01-10 06:04:45,490 | INFO     | chi2: 4.273143190238216
[2026-01-10 07:05:01] 2026-01-10 06:04:45,491 | INFO     | current chi2=4.273143190238216 (change=0.6497396418083546 %)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,491 | INFO     | right removable region: 270
[2026-01-10 07:05:01] 2026-01-10 06:04:45,491 | INFO     | sum of square deviations: 6519285025.0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,492 | INFO     | sum of deviations: 473576785795.49994
[2026-01-10 07:05:01] 2026-01-10 06:04:45,492 | INFO     | mean x: 1768016678.5
[2026-01-10 07:05:01] 2026-01-10 06:04:45,492 | INFO     | mean y: 3151409.9239130435
[2026-01-10 07:05:01] 2026-01-10 06:04:45,492 | INFO     | intersect: -128429898015.9011
[2026-01-10 07:05:01] 2026-01-10 06:04:45,492 | INFO     | chi2: 2.409805363922286
[2026-01-10 07:05:01] 2026-01-10 06:04:45,492 | INFO     | current chi2=2.409805363922286 (change=59.297944094983826 %)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,492 | INFO     | sum of square deviations: 6171352920.0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,493 | INFO     | sum of deviations: 435390043822.0001
[2026-01-10 07:05:01] 2026-01-10 06:04:45,493 | INFO     | mean x: 1768016831.0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,493 | INFO     | mean y: 3168080.6236162363
[2026-01-10 07:05:01] 2026-01-10 06:04:45,494 | INFO     | intersect: -124730733141.01057
[2026-01-10 07:05:01] 2026-01-10 06:04:45,494 | INFO     | chi2: 2.1979738662950288
[2026-01-10 07:05:01] 2026-01-10 06:04:45,494 | INFO     | current chi2=2.1979738662950288 (change=8.790398627151893 %)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,494 | INFO     | left removable region: 20
[2026-01-10 07:05:01] 2026-01-10 06:04:45,494 | INFO     | sum of square deviations: 4844974562.5
[2026-01-10 07:05:01] 2026-01-10 06:04:45,495 | INFO     | sum of deviations: 394930488635.50037
[2026-01-10 07:05:01] 2026-01-10 06:04:45,495 | INFO     | mean x: 1768016800.5
[2026-01-10 07:05:01] 2026-01-10 06:04:45,495 | INFO     | mean y: 3187681.316
[2026-01-10 07:05:01] 2026-01-10 06:04:45,495 | INFO     | intersect: -144113923756.5088
[2026-01-10 07:05:01] 2026-01-10 06:04:45,495 | INFO     | chi2: 0.436138098267022
[2026-01-10 07:05:01] 2026-01-10 06:04:45,495 | INFO     | current memory leak: 81.51 B/s (using 250 data points, chi2=0.44)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,495 | INFO     | could have reported an average CPU frequency of 2762 MHz (13 samples)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,495 | INFO     | ..............................
[2026-01-10 07:05:01] 2026-01-10 06:04:45,495 | INFO     | . Timing measurements:
[2026-01-10 07:05:01] 2026-01-10 06:04:45,496 | INFO     | . get job = 0 s
[2026-01-10 07:05:01] 2026-01-10 06:04:45,496 | INFO     | . initial setup = 1 s
[2026-01-10 07:05:01] 2026-01-10 06:04:45,496 | INFO     | . payload setup = 2 s
[2026-01-10 07:05:01] 2026-01-10 06:04:45,496 | INFO     | . stage-in = 0 s
[2026-01-10 07:05:01] 2026-01-10 06:04:45,496 | INFO     | . payload execution = 17092 s
[2026-01-10 07:05:01] 2026-01-10 06:04:45,496 | INFO     | . stage-out = 1 s
[2026-01-10 07:05:01] 2026-01-10 06:04:45,496 | INFO     | . log creation = 0 s
[2026-01-10 07:05:01] 2026-01-10 06:04:45,496 | INFO     | ..............................
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | 
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | job summary report
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | --------------------------------------------------
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | PanDA job id: 6963378506
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | task id: 47962010
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | errors: (none)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | pilot state: finished 
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | transexitcode: 0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | exeerrorcode: 0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | exeerrordiag: 
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | exitcode: 0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | exitmsg: OK
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | cpuconsumptiontime: 128743 s
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | nevents: 900
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | neventsw: 0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,545 | INFO     | pid: 15555
[2026-01-10 07:05:01] 2026-01-10 06:04:45,546 | INFO     | pgrp: 15555
[2026-01-10 07:05:01] 2026-01-10 06:04:45,546 | INFO     | corecount: 8
[2026-01-10 07:05:01] 2026-01-10 06:04:45,546 | INFO     | event service: False
[2026-01-10 07:05:01] 2026-01-10 06:04:45,546 | INFO     | sizes: {0: 2287085, 2: 2287379, 11: 2287407, 17098: 2320676, 17100: 2328588, 17101: 2328644, 17104: 2329018}
[2026-01-10 07:05:01] 2026-01-10 06:04:45,546 | INFO     | --------------------------------------------------
[2026-01-10 07:05:01] 2026-01-10 06:04:45,546 | INFO     | 
[2026-01-10 07:05:01] 2026-01-10 06:04:45,546 | INFO     | executing command: ls -lF /tmp/job_11009867/atlas/pilot/slots/0
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,554 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:05:01] 2026-01-10 06:04:45,555 | INFO     | job 6963378506 has completed (purged errors)
[2026-01-10 07:05:01] 2026-01-10 06:04:45,555 | INFO     | overall cleanup function is called
[2026-01-10 07:05:01] 2026-01-10 06:04:46,562 | INFO     | --- collectZombieJob: --- 10, [15555]
[2026-01-10 07:05:01] 2026-01-10 06:04:46,562 | INFO     | zombie collector waiting for pid 15555
[2026-01-10 07:05:01] 2026-01-10 06:04:46,562 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:05:01] 2026-01-10 06:04:46,562 | INFO     | collected zombie processes
[2026-01-10 07:05:01] 2026-01-10 06:04:46,562 | INFO     | will attempt to kill all subprocesses of pid=15555
[2026-01-10 07:05:01] 2026-01-10 06:04:46,659 | INFO     | process IDs to be killed: [15555] (in reverse order)
[2026-01-10 07:05:01] 2026-01-10 06:04:46,693 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:05:01] 2026-01-10 06:04:46,693 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:05:01] 2026-01-10 06:04:46,697 | INFO     | did not find any defunct processes belonging to 15555
[2026-01-10 07:05:01] 2026-01-10 06:04:46,700 | INFO     | did not find any defunct processes belonging to 15555
[2026-01-10 07:05:01] 2026-01-10 06:04:46,701 | INFO     | ready for new job
[2026-01-10 07:05:01] 2026-01-10 06:04:46,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:05:01] 2026-01-10 06:04:46,701 | INFO     | ***************************************
[2026-01-10 07:05:01] 2026-01-10 06:04:46,701 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:05:01] 2026-01-10 06:04:46,702 | INFO     | ***************************************
[2026-01-10 07:05:01] 2026-01-10 06:04:46,702 | INFO     | 
[2026-01-10 07:05:01] 2026-01-10 06:04:46,715 | INFO     | architecture information:
[2026-01-10 07:05:01] 2026-01-10 06:04:46,716 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:05:01] 2026-01-10 06:04:46,721 | INFO     | cat /etc/os-release:
[2026-01-10 07:05:01] NAME="CentOS Linux"
[2026-01-10 07:05:01] VERSION="7 (Core)"
[2026-01-10 07:05:01] ID="centos"
[2026-01-10 07:05:01] ID_LIKE="rhel fedora"
[2026-01-10 07:05:01] VERSION_ID="7"
[2026-01-10 07:05:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:05:01] ANSI_COLOR="0;31"
[2026-01-10 07:05:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:05:01] HOME_URL="https://www.centos.org/"
[2026-01-10 07:05:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:05:01] 
[2026-01-10 07:05:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:05:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:05:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:05:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:05:01] 
[2026-01-10 07:05:01] 2026-01-10 06:04:46,722 | INFO     | ***************************************
[2026-01-10 07:05:01] 2026-01-10 06:04:47,224 | INFO     | executing command: df -mP /tmp/job_11009867/atlas/pilot/slots/0
[2026-01-10 07:05:01] 2026-01-10 06:04:47,231 | INFO     | sufficient remaining disk space (221177184256 B)
[2026-01-10 07:05:01] 2026-01-10 06:04:47,231 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:05:01] 2026-01-10 06:04:47,231 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:05:01] 2026-01-10 06:04:47,231 | INFO     | update_server=False
[2026-01-10 07:05:01] 2026-01-10 06:04:47,231 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:05:01] 2026-01-10 06:04:47,231 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 07:05:01] 2026-01-10 06:04:47,231 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:05:01] 2026-01-10 06:04:47,232 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:05:01] 2026-01-10 06:04:47,232 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:05:01] 2026-01-10 06:04:47,232 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:05:01] 2026-01-10 06:04:47,232 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:05:01] 2026-01-10 06:04:47,347 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 07:05:01] 2026-01-10 06:04:47,347 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 07:05:01] 2026-01-10 06:04:47,347 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:05:01] 2026-01-10 06:04:47,347 | INFO     | will abort loop
[2026-01-10 07:05:01] 2026-01-10 06:04:48,236 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:48,237 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:48,266 | INFO     | all data control threads have been joined
[2026-01-10 07:05:01] 2026-01-10 06:04:48,352 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:48,414 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:48,437 | INFO     | all payload control threads have been joined
[2026-01-10 07:05:01] 2026-01-10 06:04:48,691 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:05:01] 2026-01-10 06:04:48,850 | INFO     | all job control threads have been joined
[2026-01-10 07:05:01] 2026-01-10 06:04:49,076 | INFO     | [job] validate thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:49,199 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:49,237 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:49,271 | INFO     | [data] control thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:49,294 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:49,418 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:49,442 | INFO     | [payload] control thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:49,517 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:49,537 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:49,701 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:49,855 | INFO     | [job] control thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:52,696 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:05:01] 2026-01-10 06:04:56,176 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:05:01] 2026-01-10 06:04:56,434 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2026-01-10 07:05:01] 2026-01-10 06:04:57,282 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:05:01] 2026-01-10 06:04:57,282 | INFO     | [monitor] control thread has ended
[2026-01-10 07:05:01] 2026-01-10 06:05:01,459 | INFO     | all workflow threads have been joined
[2026-01-10 07:05:01] 2026-01-10 06:05:01,459 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:05:01] 2026-01-10 06:05:01,459 | INFO     | traces error code: 0
[2026-01-10 07:05:01] 2026-01-10 06:05:01,459 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:05:01] 2026-01-10 06:05:01,509 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:05:01] 2026-01-10 06:05:01,510 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:05:01] 2026-01-10 06:05:01,511 [wrapper] pilotpid: 13198
[2026-01-10 07:05:01] 2026-01-10 06:05:01,512 [wrapper] Pilot exit status: 0
[2026-01-10 07:05:01] 2026-01-10 06:05:01,516 [wrapper] pandaids: 6963378506
[2026-01-10 07:05:01] 2026-01-10 06:05:01,540 [wrapper] cleanup supervisor_pilot 19025 13199
[2026-01-10 07:05:01] 2026-01-10 06:05:01,541 [wrapper] Test setup, not cleaning
[2026-01-10 07:05:01] 2026-01-10 06:05:01,542 [wrapper] apfmon messages muted
[2026-01-10 07:05:01] 2026-01-10 06:05:01,543 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:05:01] 2026-01-10 06:05:01,545 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:05:01]  *** Error codes and diagnostics ***
[2026-01-10 07:05:01]     "exeErrorCode": 0,
[2026-01-10 07:05:01]     "exeErrorDiag": "",
[2026-01-10 07:05:01]     "pilotErrorCode": 0,
[2026-01-10 07:05:01]     "pilotErrorDiag": "",
[2026-01-10 07:05:01]  *** Listing of results directory ***
[2026-01-10 07:05:01] total 1556856
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user    579449 Jan  9 08:13 pilot3.tar.gz
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user      5112 Jan  9 08:13 queuedata.json
[2026-01-10 07:05:01] -rwx------ 1 mf493845 unix-user     36322 Jan  9 08:14 runpilot2-wrapper.sh
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user       100 Jan  9 22:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:05:01] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan  9 22:59 run_atlas
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user       105 Jan  9 22:59 job.xml
[2026-01-10 07:05:01] -rw-r--r-- 2 mf493845 unix-user 393083970 Jan 10 00:39 EVNT.47962006._000087.pool.root.1
[2026-01-10 07:05:01] -rw-r--r-- 2 mf493845 unix-user 392320194 Jan 10 02:19 EVNT.47962006._000088.pool.root.1
[2026-01-10 07:05:01] -rw-r--r-- 2 mf493845 unix-user     15897 Jan 10 02:19 start_atlas.sh
[2026-01-10 07:05:01] drwxrwx--x 2 mf493845 unix-user       120 Jan 10 02:19 shared
[2026-01-10 07:05:01] -rw-r--r-- 2 mf493845 unix-user    592713 Jan 10 02:19 input.tar.gz
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user      6390 Jan 10 02:19 init_data.xml
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user         0 Jan 10 02:19 boinc_setup_complete
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user      8192 Jan 10 02:19 boinc_mmap_file
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user         0 Jan 10 02:19 boinc_lockfile
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user      3422 Jan 10 02:19 pandaJob.out
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user    989382 Jan 10 02:19 agis_schedconf.cvmfs.json
[2026-01-10 07:05:01] drwx------ 5 mf493845 unix-user       440 Jan 10 02:19 pilot3
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user 796871007 Jan 10 07:04 HITS.47962010._001099.pool.root.1
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user        95 Jan 10 07:04 pilot_heartbeat.json
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user      1027 Jan 10 07:04 memory_monitor_summary.json
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user   1516240 Jan 10 07:04 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user   1559741 Jan 10 07:04 log.47962010._001099.job.log.tgz.1
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user      8757 Jan 10 07:04 heartbeat.json
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user      4752 Jan 10 07:05 pilotlog.txt
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user   2468093 Jan 10 07:05 log.47962010._001099.job.log.1
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user       353 Jan 10 07:05 output.list
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user       620 Jan 10 07:05 runtime_log
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user   4044800 Jan 10 07:05 result.tar.gz
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user       650 Jan 10 07:05 yY7NDmGsLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmQHhKDmU2wN1n.diag
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user      9273 Jan 10 07:05 runtime_log.err
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user     21532 Jan 10 07:05 stderr.txt
[2026-01-10 07:05:01] HITS file was successfully produced:
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user 796871007 Jan 10 07:04 shared/HITS.pool.root.1
[2026-01-10 07:05:01]  *** Contents of shared directory: ***
[2026-01-10 07:05:01] total 1549744
[2026-01-10 07:05:01] -rw-r--r-- 2 mf493845 unix-user 393083970 Jan 10 00:39 ATLAS.root_0
[2026-01-10 07:05:01] -rw-r--r-- 2 mf493845 unix-user 392320194 Jan 10 02:19 ATLAS.root_1
[2026-01-10 07:05:01] -rw-r--r-- 2 mf493845 unix-user     15897 Jan 10 02:19 start_atlas.sh
[2026-01-10 07:05:01] -rw-r--r-- 2 mf493845 unix-user    592713 Jan 10 02:19 input.tar.gz
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user 796871007 Jan 10 07:04 HITS.pool.root.1
[2026-01-10 07:05:01] -rw------- 1 mf493845 unix-user   4044800 Jan 10 07:05 result.tar.gz
07:05:02 (5716): run_atlas exited; CPU time 128909.673904
07:05:02 (5716): called boinc_finish(0)

</stderr_txt>
]]>

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