Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
14:57:21 (3295903): wrapper (7.7.26015): starting
14:57:21 (3295903): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 14:57:21] Arguments: --nthreads 8
[2026-01-09 14:57:21] Threads: 8
[2026-01-09 14:57:21] Checking for CVMFS
[2026-01-09 14:57:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:57:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:57:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:57:22] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:57:22] 2.13.3.0 3075384 267 50216 154957 0 57 3951916 20480001 0 130560 0 575206 99.993 12629 833 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2026-01-09 14:57:22] CVMFS is ok
[2026-01-09 14:57:22] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:57:22] Small home clusters do not require a local http proxy but it is suggested if
[2026-01-09 14:57:22] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2026-01-09 14:57:22] Further information can be found at the LHC@home message board.
[2026-01-09 14:57:22] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:57:22] Checking for apptainer binary...
[2026-01-09 14:57:22] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:57:22] Running /usr/bin/apptainer --version
[2026-01-09 14:57:22] apptainer version 1.4.4
[2026-01-09 14:57:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:57:22] garage
[2026-01-09 14:57:22] apptainer works
[2026-01-09 14:57:22] Set ATHENA_PROC_NUMBER=8
[2026-01-09 14:57:22] Set ATHENA_CORE_NUMBER=8
[2026-01-09 14:57:22] Starting ATLAS job with PandaID=6963194243
[2026-01-09 14:57:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 17:12:09]  *** The last 200 lines of the pilot log: ***
[2026-01-09 17:12:09] 2026-01-10 00:11:35,650 | WARNING  | process 3306434 can no longer be monitored (due to stat problems) - aborting
[2026-01-09 17:12:09] 2026-01-10 00:11:35,650 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6963194243/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 17:12:09] 2026-01-10 00:11:35,731 | INFO     | number of running child processes to parent process 3306434: 1
[2026-01-09 17:12:09] 2026-01-10 00:11:35,731 | INFO     | maximum number of monitored processes: 13
[2026-01-09 17:12:09] 2026-01-10 00:11:36,281 | INFO     | time since job start (8046s) is within the limit (349056.0s)
[2026-01-09 17:12:09] 2026-01-10 00:11:36,980 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 17:12:09] 2026-01-10 00:11:36,982 | INFO     | found 16 cores (16 cores per socket, 1 socket) HT, CPU MHz: 4424.6280625
[2026-01-09 17:12:09] 2026-01-10 00:11:36,985 | INFO     | using path: /var/lib/boinc-client/slots/5/PanDA_Pilot-6963194243/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 17:12:09] 2026-01-10 00:11:36,986 | INFO     | extracted standard info from prmon json
[2026-01-09 17:12:09] 2026-01-10 00:11:36,986 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 17:12:09] 2026-01-10 00:11:36,986 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 17:12:09] 2026-01-10 00:11:36,987 | INFO     | fitting pss+swap vs Time
[2026-01-09 17:12:09] 2026-01-10 00:11:36,987 | INFO     | sum of square deviations: 713140813.0
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | sum of deviations: 18654058914.5
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | mean x: 1767999866.5
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | mean y: 2776798.7954545454
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | intersect: -46243873328.79882
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | chi2: 3.1384498067660997
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | sum of square deviations: 635130048.0
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | sum of deviations: 41254776714.99999
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | mean x: 1767999714.0
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | mean y: 2820320.755905512
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | intersect: -114837335113.44872
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | chi2: 1.7229072515994344
[2026-01-09 17:12:09] 2026-01-10 00:11:36,988 | INFO     | current chi2=1.7229072515994344 (change=45.103240208428225 %)
[2026-01-09 17:12:09] 2026-01-10 00:11:36,989 | INFO     | sum of square deviations: 563026370.5
[2026-01-09 17:12:09] 2026-01-10 00:11:36,989 | INFO     | sum of deviations: 38325754477.0
[2026-01-09 17:12:09] 2026-01-10 00:11:36,989 | INFO     | mean x: 1767999561.5
[2026-01-09 17:12:09] 2026-01-10 00:11:36,989 | INFO     | mean y: 2814121.393442623
[2026-01-09 17:12:09] 2026-01-10 00:11:36,989 | INFO     | intersect: -120346641356.71841
[2026-01-09 17:12:09] 2026-01-10 00:11:36,989 | INFO     | chi2: 1.725448814791676
[2026-01-09 17:12:09] 2026-01-10 00:11:36,989 | INFO     | current chi2=1.725448814791676 (change=-0.14751596116867086 %)
[2026-01-09 17:12:09] 2026-01-10 00:11:36,989 | INFO     | right removable region: 121
[2026-01-09 17:12:09] 2026-01-10 00:11:36,989 | INFO     | sum of square deviations: 635130048.0
[2026-01-09 17:12:09] 2026-01-10 00:11:36,989 | INFO     | sum of deviations: -6876892401.0
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | mean x: 1768000019.0
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | mean y: 2825909.244094488
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | intersect: 19145906816.713547
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | chi2: 1.4762552561547215
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | current chi2=1.4762552561547215 (change=52.96227924460979 %)
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | sum of square deviations: 563026370.5
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | sum of deviations: -7525052353.999996
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | mean x: 1768000171.5
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | mean y: 2827251.5573770492
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | intersect: 23632793003.61174
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | chi2: 1.4774386484950344
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | current chi2=1.4774386484950344 (change=-0.08016176981447518 %)
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | left removable region: 20
[2026-01-09 17:12:09] 2026-01-10 00:11:36,990 | INFO     | sum of square deviations: 319447850.0
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | sum of deviations: 10838992278.000004
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | mean x: 1768000141.0
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | mean y: 2876080.079207921
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | intersect: -59986070083.75291
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | chi2: 0.002512827845116126
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | current memory leak: 33.93 B/s (using 101 data points, chi2=0.00)
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | could have reported an average CPU frequency of 4399 MHz (8 samples)
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | ..............................
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | . Timing measurements:
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | . get job = 0 s
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | . initial setup = 3 s
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | . payload setup = 4 s
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | . stage-in = 0 s
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | . payload execution = 8018 s
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | . stage-out = 0 s
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | . log creation = 0 s
[2026-01-09 17:12:09] 2026-01-10 00:11:36,991 | INFO     | ..............................
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | 
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | job summary report
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | --------------------------------------------------
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | PanDA job id: 6963194243
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | task id: 47962010
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | errors: (none)
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | pilot state: finished 
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | transexitcode: 0
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | exeerrorcode: 0
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | exeerrordiag: 
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | exitcode: 0
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | exitmsg: OK
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | cpuconsumptiontime: 61686 s
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | nevents: 450
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | neventsw: 0
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | pid: 3306434
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | pgrp: 3306434
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | corecount: 8
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | event service: False
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | sizes: {0: 2284627, 3: 2284889, 11: 2284917, 8026: 2313641, 8028: 2322705, 8033: 2322895}
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | --------------------------------------------------
[2026-01-09 17:12:09] 2026-01-10 00:11:37,033 | INFO     | 
[2026-01-09 17:12:09] 2026-01-10 00:11:37,034 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/5
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,050 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | job 6963194243 has completed (purged errors)
[2026-01-09 17:12:09] 2026-01-10 00:11:37,051 | INFO     | overall cleanup function is called
[2026-01-09 17:12:09] 2026-01-10 00:11:38,063 | INFO     | --- collectZombieJob: --- 10, [3306434]
[2026-01-09 17:12:09] 2026-01-10 00:11:38,063 | INFO     | zombie collector waiting for pid 3306434
[2026-01-09 17:12:09] 2026-01-10 00:11:38,063 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 17:12:09] 2026-01-10 00:11:38,063 | INFO     | collected zombie processes
[2026-01-09 17:12:09] 2026-01-10 00:11:38,063 | INFO     | will attempt to kill all subprocesses of pid=3306434
[2026-01-09 17:12:09] 2026-01-10 00:11:38,144 | INFO     | process IDs to be killed: [3306434] (in reverse order)
[2026-01-09 17:12:09] 2026-01-10 00:11:38,198 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 17:12:09] 2026-01-10 00:11:38,199 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 17:12:09] 2026-01-10 00:11:38,202 | INFO     | did not find any defunct processes belonging to 3306434
[2026-01-09 17:12:09] 2026-01-10 00:11:38,204 | INFO     | did not find any defunct processes belonging to 3306434
[2026-01-09 17:12:09] 2026-01-10 00:11:38,205 | INFO     | ready for new job
[2026-01-09 17:12:09] 2026-01-10 00:11:38,205 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 17:12:09] 2026-01-10 00:11:38,206 | INFO     | ***************************************
[2026-01-09 17:12:09] 2026-01-10 00:11:38,206 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 17:12:09] 2026-01-10 00:11:38,206 | INFO     | ***************************************
[2026-01-09 17:12:09] 2026-01-10 00:11:38,206 | INFO     | 
[2026-01-09 17:12:09] 2026-01-10 00:11:38,207 | INFO     | architecture information:
[2026-01-09 17:12:09] 2026-01-10 00:11:38,208 | INFO     | executing command: cat /etc/os-release
[2026-01-09 17:12:09] 2026-01-10 00:11:38,229 | INFO     | cat /etc/os-release:
[2026-01-09 17:12:09] NAME="CentOS Linux"
[2026-01-09 17:12:09] VERSION="7 (Core)"
[2026-01-09 17:12:09] ID="centos"
[2026-01-09 17:12:09] ID_LIKE="rhel fedora"
[2026-01-09 17:12:09] VERSION_ID="7"
[2026-01-09 17:12:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 17:12:09] ANSI_COLOR="0;31"
[2026-01-09 17:12:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 17:12:09] HOME_URL="https://www.centos.org/"
[2026-01-09 17:12:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 17:12:09] 
[2026-01-09 17:12:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 17:12:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 17:12:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 17:12:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 17:12:09] 
[2026-01-09 17:12:09] 2026-01-10 00:11:38,230 | INFO     | ***************************************
[2026-01-09 17:12:09] 2026-01-10 00:11:38,732 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/5
[2026-01-09 17:12:09] 2026-01-10 00:11:38,756 | INFO     | sufficient remaining disk space (711119077376 B)
[2026-01-09 17:12:09] 2026-01-10 00:11:38,757 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 17:12:09] 2026-01-10 00:11:38,757 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 17:12:09] 2026-01-10 00:11:38,757 | INFO     | update_server=False
[2026-01-09 17:12:09] 2026-01-10 00:11:38,757 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 17:12:09] 2026-01-10 00:11:38,757 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:12:09] 2026-01-10 00:11:39,242 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 17:12:09] 2026-01-10 00:11:39,242 | INFO     | aborting loop
[2026-01-09 17:12:09] 2026-01-10 00:11:39,447 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 17:12:09] 2026-01-10 00:11:39,509 | INFO     | all job control threads have been joined
[2026-01-09 17:12:09] 2026-01-10 00:11:39,602 | INFO     | all data control threads have been joined
[2026-01-09 17:12:09] 2026-01-10 00:11:39,762 | INFO     | [job] retrieve thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:39,764 | INFO     | [job] queue monitor thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:39,856 | INFO     | all payload control threads have been joined
[2026-01-09 17:12:09] 2026-01-10 00:11:40,077 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:40,144 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:40,183 | INFO     | [data] copytool_in thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:40,209 | INFO     | [job] validate thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:40,247 | INFO     | [job] job monitor thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:40,287 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:40,514 | INFO     | [job] control thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:40,608 | INFO     | [data] control thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:40,722 | INFO     | [payload] validate_post thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:40,726 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:40,862 | INFO     | [payload] control thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:41,093 | INFO     | [payload] failed_post thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:41,455 | INFO     | [data] copytool_out thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:41,988 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 17:12:09] 2026-01-10 00:11:43,292 | INFO     | [monitor] cgroup control has ended
[2026-01-09 17:12:09] 2026-01-10 00:11:45,993 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 17:12:09] 2026-01-10 00:11:46,390 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 137873096255296)>', '<ExcThread(monitor, started 137872334120704)>']
[2026-01-09 17:12:09] 2026-01-10 00:11:51,416 | INFO     | all workflow threads have been joined
[2026-01-09 17:12:09] 2026-01-10 00:11:51,416 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 17:12:09] 2026-01-10 00:11:51,416 | INFO     | traces error code: 0
[2026-01-09 17:12:09] 2026-01-10 00:11:51,417 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 17:12:09] 2026-01-10 00:12:09,402 | INFO     | PID=3299775 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 17:12:09] 2026-01-10 00:12:09,403 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 17:12:09] 2026-01-10 00:12:09,403 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 17:12:09] 2026-01-10 00:12:09,403 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 17:12:09] 2026-01-10 00:12:09,403 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 17:12:09] 2026-01-10 00:12:09,403 | INFO     | [monitor] control thread has ended
[2026-01-09 17:12:09] 2026-01-10 00:12:09,475 [wrapper] ==== pilot stdout END ====
[2026-01-09 17:12:09] 2026-01-10 00:12:09,479 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 17:12:09] 2026-01-10 00:12:09,481 [wrapper] pilotpid: 3299775
[2026-01-09 17:12:09] 2026-01-10 00:12:09,484 [wrapper] Pilot exit status: 0
[2026-01-09 17:12:09] 2026-01-10 00:12:09,494 [wrapper] pandaids: 6963194243
[2026-01-09 17:12:09] 2026-01-10 00:12:09,524 [wrapper] cleanup supervisor_pilot 3325357 3299776
[2026-01-09 17:12:09] 2026-01-10 00:12:09,529 [wrapper] Test setup, not cleaning
[2026-01-09 17:12:09] 2026-01-10 00:12:09,535 [wrapper] apfmon messages muted
[2026-01-09 17:12:09] 2026-01-10 00:12:09,537 [wrapper] ==== wrapper stdout END ====
[2026-01-09 17:12:09] 2026-01-10 00:12:09,544 [wrapper] ==== wrapper stderr END ====
[2026-01-09 17:12:09]  *** Error codes and diagnostics ***
[2026-01-09 17:12:09]     "exeErrorCode": 0,
[2026-01-09 17:12:09]     "exeErrorDiag": "",
[2026-01-09 17:12:09]     "pilotErrorCode": 0,
[2026-01-09 17:12:09]     "pilotErrorDiag": "",
[2026-01-09 17:12:09]  *** Listing of results directory ***
[2026-01-09 17:12:09] total 781244
[2026-01-09 17:12:09] -rwx------ 1 boinc boinc     36322 Jan  9 00:16 runpilot2-wrapper.sh
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc      5112 Jan  9 00:20 queuedata.json
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc    579449 Jan  9 00:20 pilot3.tar.gz
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc       100 Jan  9 14:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 17:12:09] -rwxr-xr-x 1 boinc boinc      7986 Jan  9 14:57 run_atlas
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc       105 Jan  9 14:57 job.xml
[2026-01-09 17:12:09] -rw-r--r-- 2 boinc boinc     15847 Jan  9 14:57 start_atlas.sh
[2026-01-09 17:12:09] drwxrwx--x 2 boinc boinc      4096 Jan  9 14:57 shared
[2026-01-09 17:12:09] -rw-r--r-- 2 boinc boinc    592613 Jan  9 14:57 input.tar.gz
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc      9472 Jan  9 14:57 init_data.xml
[2026-01-09 17:12:09] -rw-r--r-- 2 boinc boinc 395458336 Jan  9 14:57 EVNT.47962006._000056.pool.root.1
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc         0 Jan  9 14:57 boinc_setup_complete
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc         0 Jan  9 14:57 boinc_lockfile
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc      2891 Jan  9 14:57 pandaJob.out
[2026-01-09 17:12:09] -rw------- 1 boinc boinc    989398 Jan  9 14:57 agis_schedconf.cvmfs.json
[2026-01-09 17:12:09] -rw------- 1 boinc boinc   1516240 Jan  9 14:57 agis_ddmendpoints.agis.ALL.json
[2026-01-09 17:12:09] drwx------ 5 boinc boinc      4096 Jan  9 14:57 pilot3
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc       530 Jan  9 17:06 boinc_task_state.xml
[2026-01-09 17:12:09] -rw------- 1 boinc boinc 395621667 Jan  9 17:11 HITS.47962010._000582.pool.root.1
[2026-01-09 17:12:09] -rw------- 1 boinc boinc      1028 Jan  9 17:11 memory_monitor_summary.json
[2026-01-09 17:12:09] -rw------- 1 boinc boinc        95 Jan  9 17:11 pilot_heartbeat.json
[2026-01-09 17:12:09] -rw------- 1 boinc boinc   1322188 Jan  9 17:11 log.47962010._000582.job.log.tgz.1
[2026-01-09 17:12:09] -rw------- 1 boinc boinc      8523 Jan  9 17:11 heartbeat.json
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc      8192 Jan  9 17:12 boinc_mmap_file
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc        27 Jan  9 17:12 wrapper_checkpoint.txt
[2026-01-09 17:12:09] -rw------- 1 boinc boinc       747 Jan  9 17:12 pilotlog.txt
[2026-01-09 17:12:09] -rw------- 1 boinc boinc   1173505 Jan  9 17:12 log.47962010._000582.job.log.1
[2026-01-09 17:12:09] -rw------- 1 boinc boinc       353 Jan  9 17:12 output.list
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc       620 Jan  9 17:12 runtime_log
[2026-01-09 17:12:09] -rw------- 1 boinc boinc   2519040 Jan  9 17:12 result.tar.gz
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc      8914 Jan  9 17:12 runtime_log.err
[2026-01-09 17:12:09] -rw------- 1 boinc boinc       656 Jan  9 17:12 5dFMDm3uLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZNhKDm8Mdjbm.diag
[2026-01-09 17:12:09] -rw-r--r-- 1 boinc boinc     21239 Jan  9 17:12 stderr.txt
[2026-01-09 17:12:09] HITS file was successfully produced:
[2026-01-09 17:12:09] -rw------- 1 boinc boinc 395621667 Jan  9 17:11 shared/HITS.pool.root.1
[2026-01-09 17:12:09]  *** Contents of shared directory: ***
[2026-01-09 17:12:09] total 775608
[2026-01-09 17:12:09] -rw-r--r-- 2 boinc boinc     15847 Jan  9 14:57 start_atlas.sh
[2026-01-09 17:12:09] -rw-r--r-- 2 boinc boinc    592613 Jan  9 14:57 input.tar.gz
[2026-01-09 17:12:09] -rw-r--r-- 2 boinc boinc 395458336 Jan  9 14:57 ATLAS.root_0
[2026-01-09 17:12:09] -rw------- 1 boinc boinc 395621667 Jan  9 17:11 HITS.pool.root.1
[2026-01-09 17:12:09] -rw------- 1 boinc boinc   2519040 Jan  9 17:12 result.tar.gz
17:12:11 (3295903): run_atlas exited; CPU time 61641.800594
17:12:11 (3295903): called boinc_finish(0)

</stderr_txt>
]]>

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