Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
04:17:56 (1904667): wrapper (7.7.26015): starting
04:17:56 (1904667): wrapper: running run_atlas (--nthreads 12)
[2026-01-13 04:17:56] Arguments: --nthreads 12
[2026-01-13 04:17:56] Threads: 12
[2026-01-13 04:17:56] Checking for CVMFS
[2026-01-13 04:17:56] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-13 04:17:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-13 04:17:56] Running cvmfs_config stat atlas.cern.ch
[2026-01-13 04:17:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-13 04:17:56] 2.13.3.0 40677 5665 64456 155077 3 50 3027749 4096000 7977 130560 0 29682958 99.951 921624 229 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-13 04:17:56] CVMFS is ok
[2026-01-13 04:17:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-13 04:17:56] Checking for apptainer binary...
[2026-01-13 04:17:56] apptainer is not installed, using version from CVMFS
[2026-01-13 04:17:56] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-13 04:17:58] epyc7v12
[2026-01-13 04:17:58] apptainer works
[2026-01-13 04:17:58] Set ATHENA_PROC_NUMBER=12
[2026-01-13 04:17:58] Set ATHENA_CORE_NUMBER=12
[2026-01-13 04:17:58] Starting ATLAS job with PandaID=6963375845
[2026-01-13 04:17:58] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31420/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-13 12:33:09]  *** The last 200 lines of the pilot log: ***
[2026-01-13 12:33:09] 2026-01-13 12:32:03,540 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-13 12:33:09] 2026-01-13 12:32:03,574 | INFO     | monitor loop #1983: job 0:6963375845 is in state 'finished'
[2026-01-13 12:33:09] 2026-01-13 12:32:03,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-13 12:33:09] 2026-01-13 12:32:03,583 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2369.5685625
[2026-01-13 12:33:09] 2026-01-13 12:32:03,632 | INFO     | using path: /opt/boinc/instance_homes/boinc_31420/slots/0/PanDA_Pilot-6963375845/memory_monitor_summary.json (trf name=prmon)
[2026-01-13 12:33:09] 2026-01-13 12:32:03,637 | INFO     | extracted standard info from prmon json
[2026-01-13 12:33:09] 2026-01-13 12:32:03,637 | INFO     | extracted standard memory fields from prmon json
[2026-01-13 12:33:09] 2026-01-13 12:32:03,637 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-13 12:33:09] 2026-01-13 12:32:03,654 | INFO     | fitting pss+swap vs Time
[2026-01-13 12:33:09] 2026-01-13 12:32:03,655 | INFO     | sum of square deviations: 35377655204.598015
[2026-01-13 12:33:09] 2026-01-13 12:32:03,670 | INFO     | sum of deviations: 396918463421.1962
[2026-01-13 12:33:09] 2026-01-13 12:32:03,671 | INFO     | mean x: 1768292690.402062
[2026-01-13 12:33:09] 2026-01-13 12:32:03,671 | INFO     | mean y: 3423103.8041237113
[2026-01-13 12:33:09] 2026-01-13 12:32:03,671 | INFO     | intersect: -19835879797.82227
[2026-01-13 12:33:09] 2026-01-13 12:32:03,672 | INFO     | chi2: 7.088923221060453
[2026-01-13 12:33:09] 2026-01-13 12:32:03,672 | INFO     | sum of square deviations: 34295014384.66664
[2026-01-13 12:33:09] 2026-01-13 12:32:03,686 | INFO     | sum of deviations: 608634210747.417
[2026-01-13 12:33:09] 2026-01-13 12:32:03,686 | INFO     | mean x: 1768292537.9166667
[2026-01-13 12:33:09] 2026-01-13 12:32:03,687 | INFO     | mean y: 3452917.1354166665
[2026-01-13 12:33:09] 2026-01-13 12:32:03,687 | INFO     | intersect: -31378465198.246616
[2026-01-13 12:33:09] 2026-01-13 12:32:03,690 | INFO     | chi2: 3.362776954567638
[2026-01-13 12:33:09] 2026-01-13 12:32:03,691 | INFO     | current chi2=3.362776954567638 (change=52.562937279710155 %)
[2026-01-13 12:33:09] 2026-01-13 12:32:03,691 | INFO     | sum of square deviations: 33234612096.096878
[2026-01-13 12:33:09] 2026-01-13 12:32:03,705 | INFO     | sum of deviations: 688294839076.3473
[2026-01-13 12:33:09] 2026-01-13 12:32:03,707 | INFO     | mean x: 1768292385.4252632
[2026-01-13 12:33:09] 2026-01-13 12:32:03,707 | INFO     | mean y: 3464350.2210526317
[2026-01-13 12:33:09] 2026-01-13 12:32:03,707 | INFO     | intersect: -36618191390.69703
[2026-01-13 12:33:09] 2026-01-13 12:32:03,708 | INFO     | chi2: 2.6484192623314335
[2026-01-13 12:33:09] 2026-01-13 12:32:03,708 | INFO     | current chi2=2.6484192623314335 (change=21.24308872956611 %)
[2026-01-13 12:33:09] 2026-01-13 12:32:03,708 | INFO     | right removable region: 474
[2026-01-13 12:33:09] 2026-01-13 12:32:03,709 | INFO     | sum of square deviations: 34294628927.497883
[2026-01-13 12:33:09] 2026-01-13 12:32:03,723 | INFO     | sum of deviations: 229522626348.94165
[2026-01-13 12:33:09] 2026-01-13 12:32:03,723 | INFO     | mean x: 1768292842.9145834
[2026-01-13 12:33:09] 2026-01-13 12:32:03,723 | INFO     | mean y: 3446623.6083333334
[2026-01-13 12:33:09] 2026-01-13 12:32:03,723 | INFO     | intersect: -11831153433.380919
[2026-01-13 12:33:09] 2026-01-13 12:32:03,726 | INFO     | chi2: 4.667480592480455
[2026-01-13 12:33:09] 2026-01-13 12:32:03,726 | INFO     | current chi2=4.667480592480455 (change=34.158116163342605 %)
[2026-01-13 12:33:09] 2026-01-13 12:32:03,727 | INFO     | sum of square deviations: 33234046021.629436
[2026-01-13 12:33:09] 2026-01-13 12:32:03,741 | INFO     | sum of deviations: 186448310074.83374
[2026-01-13 12:33:09] 2026-01-13 12:32:03,742 | INFO     | mean x: 1768292995.4189475
[2026-01-13 12:33:09] 2026-01-13 12:32:03,742 | INFO     | mean y: 3452812.307368421
[2026-01-13 12:33:09] 2026-01-13 12:32:03,744 | INFO     | intersect: -9916953523.365864
[2026-01-13 12:33:09] 2026-01-13 12:32:03,745 | INFO     | chi2: 4.578043686319609
[2026-01-13 12:33:09] 2026-01-13 12:32:03,745 | INFO     | current chi2=4.578043686319609 (change=1.9161709275220837 %)
[2026-01-13 12:33:09] 2026-01-13 12:32:03,745 | INFO     | left removable region: 20
[2026-01-13 12:33:09] 2026-01-13 12:32:03,746 | INFO     | sum of square deviations: 29018616574.02863
[2026-01-13 12:33:09] 2026-01-13 12:32:03,758 | INFO     | sum of deviations: 420311806208.249
[2026-01-13 12:33:09] 2026-01-13 12:32:03,759 | INFO     | mean x: 1768292964.9537444
[2026-01-13 12:33:09] 2026-01-13 12:32:03,759 | INFO     | mean y: 3504201.0594713655
[2026-01-13 12:33:09] 2026-01-13 12:32:03,760 | INFO     | intersect: -25608826700.691223
[2026-01-13 12:33:09] 2026-01-13 12:32:03,760 | INFO     | chi2: 0.051861330950020525
[2026-01-13 12:33:09] 2026-01-13 12:32:03,760 | INFO     | current memory leak: 14.48 B/s (using 454 data points, chi2=0.05)
[2026-01-13 12:33:09] 2026-01-13 12:32:03,763 | INFO     | could have reported an average CPU frequency of 2390 MHz (20 samples)
[2026-01-13 12:33:09] 2026-01-13 12:32:03,763 | INFO     | ..............................
[2026-01-13 12:33:09] 2026-01-13 12:32:03,763 | INFO     | . Timing measurements:
[2026-01-13 12:33:09] 2026-01-13 12:32:03,764 | INFO     | . get job = 0 s
[2026-01-13 12:33:09] 2026-01-13 12:32:03,764 | INFO     | . initial setup = 1 s
[2026-01-13 12:33:09] 2026-01-13 12:32:03,764 | INFO     | . payload setup = 8 s
[2026-01-13 12:33:09] 2026-01-13 12:32:03,764 | INFO     | . stage-in = 0 s
[2026-01-13 12:33:09] 2026-01-13 12:32:03,764 | INFO     | . payload execution = 29573 s
[2026-01-13 12:33:09] 2026-01-13 12:32:03,764 | INFO     | . stage-out = 5 s
[2026-01-13 12:33:09] 2026-01-13 12:32:03,764 | INFO     | . log creation = 1 s
[2026-01-13 12:33:09] 2026-01-13 12:32:03,764 | INFO     | ..............................
[2026-01-13 12:33:09] 2026-01-13 12:32:03,948 | INFO     | time since job start (29630s) is within the limit (349056.0s)
[2026-01-13 12:33:09] 2026-01-13 12:32:03,960 | INFO     | 
[2026-01-13 12:33:09] 2026-01-13 12:32:03,960 | INFO     | job summary report
[2026-01-13 12:33:09] 2026-01-13 12:32:03,960 | INFO     | --------------------------------------------------
[2026-01-13 12:33:09] 2026-01-13 12:32:03,960 | INFO     | PanDA job id: 6963375845
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | task id: 47962010
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | errors: (none)
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | pilot state: finished 
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | transexitcode: 0
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | exeerrorcode: 0
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | exeerrordiag: 
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | exitcode: 0
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | exitmsg: OK
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | cpuconsumptiontime: 277265 s
[2026-01-13 12:33:09] 2026-01-13 12:32:03,961 | INFO     | nevents: 900
[2026-01-13 12:33:09] 2026-01-13 12:32:03,962 | INFO     | neventsw: 0
[2026-01-13 12:33:09] 2026-01-13 12:32:03,962 | INFO     | pid: 1920992
[2026-01-13 12:33:09] 2026-01-13 12:32:03,962 | INFO     | pgrp: 1920992
[2026-01-13 12:33:09] 2026-01-13 12:32:03,962 | INFO     | corecount: 12
[2026-01-13 12:33:09] 2026-01-13 12:32:03,962 | INFO     | event service: False
[2026-01-13 12:33:09] 2026-01-13 12:32:03,962 | INFO     | sizes: {0: 2284474, 1: 2284673, 7: 2284935, 12: 2284963, 29586: 2323936, 29592: 2332976, 29595: 2333160, 29612: 2333406}
[2026-01-13 12:33:09] 2026-01-13 12:32:03,962 | INFO     | --------------------------------------------------
[2026-01-13 12:33:09] 2026-01-13 12:32:03,962 | INFO     | 
[2026-01-13 12:33:09] 2026-01-13 12:32:03,962 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31420/slots/0
[2026-01-13 12:33:09] 2026-01-13 12:32:04,037 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,038 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,038 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,038 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,038 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,038 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,038 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,038 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,038 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,039 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,039 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,039 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,039 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,042 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,042 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,042 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,042 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,042 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-13 12:33:09] 2026-01-13 12:32:04,042 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,043 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-13 12:33:09] 2026-01-13 12:32:04,043 | INFO     | job 6963375845 has completed (purged errors)
[2026-01-13 12:33:09] 2026-01-13 12:32:04,043 | INFO     | overall cleanup function is called
[2026-01-13 12:33:09] 2026-01-13 12:32:05,097 | INFO     | --- collectZombieJob: --- 10, [1920992]
[2026-01-13 12:33:09] 2026-01-13 12:32:05,097 | INFO     | zombie collector waiting for pid 1920992
[2026-01-13 12:33:09] 2026-01-13 12:32:05,097 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-13 12:33:09] 2026-01-13 12:32:05,098 | INFO     | collected zombie processes
[2026-01-13 12:33:09] 2026-01-13 12:32:05,098 | INFO     | will attempt to kill all subprocesses of pid=1920992
[2026-01-13 12:33:09] 2026-01-13 12:32:06,406 | INFO     | process IDs to be killed: [1920992] (in reverse order)
[2026-01-13 12:33:09] 2026-01-13 12:32:07,132 | WARNING  | found no corresponding commands to process id(s)
[2026-01-13 12:33:09] 2026-01-13 12:32:07,133 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-13 12:33:09] 2026-01-13 12:32:07,164 | INFO     | did not find any defunct processes belonging to 1920992
[2026-01-13 12:33:09] 2026-01-13 12:32:07,203 | INFO     | did not find any defunct processes belonging to 1920992
[2026-01-13 12:33:09] 2026-01-13 12:32:07,203 | INFO     | ready for new job
[2026-01-13 12:33:09] 2026-01-13 12:32:07,204 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-13 12:33:09] 2026-01-13 12:32:07,215 | INFO     | ***************************************
[2026-01-13 12:33:09] 2026-01-13 12:32:07,221 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-13 12:33:09] 2026-01-13 12:32:07,221 | INFO     | ***************************************
[2026-01-13 12:33:09] 2026-01-13 12:32:07,221 | INFO     | 
[2026-01-13 12:33:09] 2026-01-13 12:32:07,238 | INFO     | architecture information:
[2026-01-13 12:33:09] 2026-01-13 12:32:07,247 | INFO     | executing command: cat /etc/os-release
[2026-01-13 12:33:09] 2026-01-13 12:32:07,287 | INFO     | cat /etc/os-release:
[2026-01-13 12:33:09] NAME="CentOS Linux"
[2026-01-13 12:33:09] VERSION="7 (Core)"
[2026-01-13 12:33:09] ID="centos"
[2026-01-13 12:33:09] ID_LIKE="rhel fedora"
[2026-01-13 12:33:09] VERSION_ID="7"
[2026-01-13 12:33:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-13 12:33:09] ANSI_COLOR="0;31"
[2026-01-13 12:33:09] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-13 12:33:09] HOME_URL="https://www.centos.org/"
[2026-01-13 12:33:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-13 12:33:09] 
[2026-01-13 12:33:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-13 12:33:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-13 12:33:09] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-13 12:33:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-13 12:33:09] 
[2026-01-13 12:33:09] 2026-01-13 12:32:07,288 | INFO     | ***************************************
[2026-01-13 12:33:09] 2026-01-13 12:32:07,792 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31420/slots/0
[2026-01-13 12:33:09] 2026-01-13 12:32:07,840 | INFO     | sufficient remaining disk space (376685199360 B)
[2026-01-13 12:33:09] 2026-01-13 12:32:07,840 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-13 12:33:09] 2026-01-13 12:32:07,840 | INFO     | current server update state: UPDATING_FINAL
[2026-01-13 12:33:09] 2026-01-13 12:32:07,840 | INFO     | update_server=False
[2026-01-13 12:33:09] 2026-01-13 12:32:07,841 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-13 12:33:09] 2026-01-13 12:32:07,841 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-13 12:33:09] 2026-01-13 12:32:07,841 | INFO     | aborting loop
[2026-01-13 12:33:09] 2026-01-13 12:32:08,310 | INFO     | all data control threads have been joined
[2026-01-13 12:33:09] 2026-01-13 12:32:08,507 | INFO     | all payload control threads have been joined
[2026-01-13 12:33:09] 2026-01-13 12:32:08,845 | INFO     | [job] retrieve thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:08,846 | INFO     | [job] job monitor thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:08,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-13 12:33:09] 2026-01-13 12:32:08,891 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:08,955 | INFO     | [payload] execute_payloads thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:08,972 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-13 12:33:09] 2026-01-13 12:32:09,125 | INFO     | [job] validate thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:09,187 | INFO     | all job control threads have been joined
[2026-01-13 12:33:09] 2026-01-13 12:32:09,315 | INFO     | [data] control thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:09,488 | INFO     | [payload] validate_post thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:09,512 | INFO     | [payload] control thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:09,697 | INFO     | [payload] failed_post thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:09,977 | INFO     | [job] queue monitor thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:10,193 | INFO     | [job] control thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:10,226 | INFO     | [job] create_data_payload thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:10,229 | INFO     | [payload] validate_pre thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:10,245 | INFO     | [data] copytool_in thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:10,466 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-13 12:33:09] 2026-01-13 12:32:10,866 | INFO     | [data] copytool_out thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:14,483 | INFO     | [data] queue_monitor thread has finished
[2026-01-13 12:33:09] 2026-01-13 12:32:38,762 | INFO     | PID=1908860 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-13 12:33:09] 2026-01-13 12:32:38,763 | INFO     | .. there are 10 such processes running
[2026-01-13 12:33:09] 2026-01-13 12:32:38,763 | INFO     | found 0 job(s) in 20 queues
[2026-01-13 12:33:09] 2026-01-13 12:32:38,763 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-13 12:33:09] 2026-01-13 12:32:38,767 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-13 12:33:09] 2026-01-13 12:33:02,644 | INFO     | [monitor] cgroup control has ended
[2026-01-13 12:33:09] 2026-01-13 12:33:03,704 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 129328045569856)>', '<ExcThread(monitor, started 129327203071744)>']
[2026-01-13 12:33:09] 2026-01-13 12:33:03,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-13 12:33:09] 2026-01-13 12:33:03,924 | INFO     | [monitor] control thread has ended
[2026-01-13 12:33:09] 2026-01-13 12:33:08,729 | INFO     | all workflow threads have been joined
[2026-01-13 12:33:09] 2026-01-13 12:33:08,729 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-13 12:33:09] 2026-01-13 12:33:08,730 | INFO     | traces error code: 0
[2026-01-13 12:33:09] 2026-01-13 12:33:08,730 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-13 12:33:09] 2026-01-13 12:33:08,909 [wrapper] ==== pilot stdout END ====
[2026-01-13 12:33:09] 2026-01-13 12:33:08,923 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-13 12:33:09] 2026-01-13 12:33:08,939 [wrapper] pilotpid: 1908860
[2026-01-13 12:33:09] 2026-01-13 12:33:08,952 [wrapper] Pilot exit status: 0
[2026-01-13 12:33:09] 2026-01-13 12:33:08,991 [wrapper] pandaids: 6963375845
[2026-01-13 12:33:09] 2026-01-13 12:33:09,152 [wrapper] cleanup supervisor_pilot 2602315 1908861
[2026-01-13 12:33:09] ./runpilot2-wrapper.sh: line 616: 2602315 Terminated              sleep 900
[2026-01-13 12:33:09] 2026-01-13 12:33:09,170 [wrapper] Test setup, not cleaning
[2026-01-13 12:33:09] 2026-01-13 12:33:09,187 [wrapper] apfmon messages muted
[2026-01-13 12:33:09] 2026-01-13 12:33:09,211 [wrapper] ==== wrapper stdout END ====
[2026-01-13 12:33:09] 2026-01-13 12:33:09,227 [wrapper] ==== wrapper stderr END ====
[2026-01-13 12:33:09]  *** Error codes and diagnostics ***
[2026-01-13 12:33:09]     "exeErrorCode": 0,
[2026-01-13 12:33:09]     "exeErrorDiag": "",
[2026-01-13 12:33:09]     "pilotErrorCode": 0,
[2026-01-13 12:33:09]     "pilotErrorDiag": "",
[2026-01-13 12:33:09]  *** Listing of results directory ***
[2026-01-13 12:33:09] total 1179240
[2026-01-13 12:33:09] -rw-r--r-- 1 boinc boinc    579449 Jan  9 07:13 pilot3.tar.gz
[2026-01-13 12:33:09] -rwx------ 1 boinc boinc     36322 Jan  9 07:14 runpilot2-wrapper.sh
[2026-01-13 12:33:09] -rw-r--r-- 1 boinc boinc      5112 Jan  9 07:16 queuedata.json
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc       100 Jan 13 04:17 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-13 12:33:09] -rwxr-xr-x 1 boinc boinc      7986 Jan 13 04:17 run_atlas
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc       105 Jan 13 04:17 job.xml
[2026-01-13 12:33:09] -rw-r--r-- 2 boinc boinc 393191470 Jan 13 04:17 EVNT.47962006._000080.pool.root.1
[2026-01-13 12:33:09] -rw-r--r-- 2 boinc boinc     15847 Jan 13 04:17 start_atlas.sh
[2026-01-13 12:33:09] drwxrwx--x 2 boinc boinc      4096 Jan 13 04:17 shared
[2026-01-13 12:33:09] -rw-r--r-- 2 boinc boinc    592610 Jan 13 04:17 input.tar.gz
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc      6557 Jan 13 04:17 init_data.xml
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc         0 Jan 13 04:17 boinc_setup_complete
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc         0 Jan 13 04:17 boinc_lockfile
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc      2892 Jan 13 04:17 pandaJob.out
[2026-01-13 12:33:09] -rw------- 1 boinc boinc    987755 Jan 13 04:18 agis_schedconf.cvmfs.json
[2026-01-13 12:33:09] drwx------ 5 boinc boinc      4096 Jan 13 04:18 pilot3
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc       533 Jan 13 12:20 boinc_task_state.xml
[2026-01-13 12:33:09] -rw------- 1 boinc boinc 797817254 Jan 13 12:30 HITS.47962010._001018.pool.root.1
[2026-01-13 12:33:09] -rw------- 1 boinc boinc      1035 Jan 13 12:31 memory_monitor_summary.json
[2026-01-13 12:33:09] -rw------- 1 boinc boinc   1516240 Jan 13 12:31 agis_ddmendpoints.agis.ALL.json
[2026-01-13 12:33:09] -rw------- 1 boinc boinc   2183813 Jan 13 12:31 log.47962010._001018.job.log.tgz.1
[2026-01-13 12:33:09] -rw------- 1 boinc boinc        95 Jan 13 12:31 pilot_heartbeat.json
[2026-01-13 12:33:09] -rw------- 1 boinc boinc      8543 Jan 13 12:32 heartbeat.json
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc        29 Jan 13 12:33 wrapper_checkpoint.txt
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc      8192 Jan 13 12:33 boinc_mmap_file
[2026-01-13 12:33:09] -rw------- 1 boinc boinc      4848 Jan 13 12:33 pilotlog.txt
[2026-01-13 12:33:09] -rw------- 1 boinc boinc   4120314 Jan 13 12:33 log.47962010._001018.job.log.1
[2026-01-13 12:33:09] -rw------- 1 boinc boinc       353 Jan 13 12:33 output.list
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc       620 Jan 13 12:33 runtime_log
[2026-01-13 12:33:09] -rw------- 1 boinc boinc   6328320 Jan 13 12:33 result.tar.gz
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc      9168 Jan 13 12:33 runtime_log.err
[2026-01-13 12:33:09] -rw------- 1 boinc boinc       660 Jan 13 12:33 UVlKDm6sLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZJhKDmRvAXXn.diag
[2026-01-13 12:33:09] -rw-rw-r-- 1 boinc boinc     21004 Jan 13 12:33 stderr.txt
[2026-01-13 12:33:09] HITS file was successfully produced:
[2026-01-13 12:33:09] -rw------- 1 boinc boinc 797817254 Jan 13 12:30 shared/HITS.pool.root.1
[2026-01-13 12:33:09]  *** Contents of shared directory: ***
[2026-01-13 12:33:09] total 1169884
[2026-01-13 12:33:09] -rw-r--r-- 2 boinc boinc 393191470 Jan 13 04:17 ATLAS.root_0
[2026-01-13 12:33:09] -rw-r--r-- 2 boinc boinc     15847 Jan 13 04:17 start_atlas.sh
[2026-01-13 12:33:09] -rw-r--r-- 2 boinc boinc    592610 Jan 13 04:17 input.tar.gz
[2026-01-13 12:33:09] -rw------- 1 boinc boinc 797817254 Jan 13 12:30 HITS.pool.root.1
[2026-01-13 12:33:09] -rw------- 1 boinc boinc   6328320 Jan 13 12:33 result.tar.gz
12:33:11 (1904667): run_atlas exited; CPU time 277816.336587
12:33:11 (1904667): called boinc_finish(0)

</stderr_txt>
]]>

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