Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
05:13:38 (3729086): wrapper (7.7.26015): starting
05:13:38 (3729086): wrapper: running run_atlas (--nthreads 12)
[2026-01-12 05:13:38] Arguments: --nthreads 12
[2026-01-12 05:13:38] Threads: 12
[2026-01-12 05:13:38] Checking for CVMFS
[2026-01-12 05:13:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-12 05:13:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-12 05:13:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-12 05:13:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-12 05:13:39] 2.13.3.0 40677 4281 51344 155040 3 253 3416693 4096000 8890 130560 0 22612241 99.976 372044 263 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-12 05:13:39] CVMFS is ok
[2026-01-12 05:13:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-12 05:13:39] Checking for apptainer binary...
[2026-01-12 05:13:39] apptainer is not installed, using version from CVMFS
[2026-01-12 05:13:39] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-12 05:13:42] epyc7v12
[2026-01-12 05:13:42] apptainer works
[2026-01-12 05:13:42] Set ATHENA_PROC_NUMBER=12
[2026-01-12 05:13:42] Set ATHENA_CORE_NUMBER=12
[2026-01-12 05:13:42] Starting ATLAS job with PandaID=6963383880
[2026-01-12 05:13:42] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31420/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-12 07:06:36]  *** The last 200 lines of the pilot log: ***
[2026-01-12 07:06:36] 2026-01-12 07:05:26,682 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-12 07:06:36] 2026-01-12 07:05:26,951 | INFO     | time since job start (6668s) is within the limit (349056.0s)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,113 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-12 07:06:36] 2026-01-12 07:05:27,168 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2539.4488515625007
[2026-01-12 07:06:36] 2026-01-12 07:05:27,223 | INFO     | using path: /opt/boinc/instance_homes/boinc_31420/slots/1/PanDA_Pilot-6963383880/memory_monitor_summary.json (trf name=prmon)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,224 | INFO     | extracted standard info from prmon json
[2026-01-12 07:06:36] 2026-01-12 07:05:27,225 | INFO     | extracted standard memory fields from prmon json
[2026-01-12 07:06:36] 2026-01-12 07:05:27,225 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-12 07:06:36] 2026-01-12 07:05:27,228 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-12 07:06:36] 2026-01-12 07:05:27,228 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-12 07:06:36] 2026-01-12 07:05:27,234 | INFO     | fitting pss+swap vs Time
[2026-01-12 07:06:36] 2026-01-12 07:05:27,234 | INFO     | sum of square deviations: 390582207.0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,235 | INFO     | sum of deviations: 23234930317.000004
[2026-01-12 07:06:36] 2026-01-12 07:05:27,235 | INFO     | mean x: 1768198191.5
[2026-01-12 07:06:36] 2026-01-12 07:05:27,235 | INFO     | mean y: 2690797.907407407
[2026-01-12 07:06:36] 2026-01-12 07:05:27,235 | INFO     | intersect: -105183774509.12059
[2026-01-12 07:06:36] 2026-01-12 07:05:27,235 | INFO     | chi2: 2.314232609152227
[2026-01-12 07:06:36] 2026-01-12 07:05:27,236 | INFO     | sum of square deviations: 338804492.0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,237 | INFO     | sum of deviations: 22493537842.000004
[2026-01-12 07:06:36] 2026-01-12 07:05:27,237 | INFO     | mean x: 1768198039.0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,237 | INFO     | mean y: 2688621.213592233
[2026-01-12 07:06:36] 2026-01-12 07:05:27,238 | INFO     | intersect: -117389584626.44067
[2026-01-12 07:06:36] 2026-01-12 07:05:27,238 | INFO     | chi2: 2.3141592288491197
[2026-01-12 07:06:36] 2026-01-12 07:05:27,238 | INFO     | current chi2=2.3141592288491197 (change=0.003170826597854361 %)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,238 | INFO     | right removable region: 102
[2026-01-12 07:06:36] 2026-01-12 07:05:27,242 | INFO     | sum of square deviations: 338804492.0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,243 | INFO     | sum of deviations: -1863941253.9999995
[2026-01-12 07:06:36] 2026-01-12 07:05:27,243 | INFO     | mean x: 1768198344.0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,243 | INFO     | mean y: 2763894.339805825
[2026-01-12 07:06:36] 2026-01-12 07:05:27,243 | INFO     | intersect: 9730550616.353168
[2026-01-12 07:06:36] 2026-01-12 07:05:27,243 | INFO     | chi2: 0.2232144812891816
[2026-01-12 07:06:36] 2026-01-12 07:05:27,243 | INFO     | current chi2=0.2232144812891816 (change=90.3547084935878 %)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,244 | INFO     | sum of square deviations: 291817564.5
[2026-01-12 07:06:36] 2026-01-12 07:05:27,244 | INFO     | sum of deviations: -8861934148.999998
[2026-01-12 07:06:36] 2026-01-12 07:05:27,244 | INFO     | mean x: 1768198496.5
[2026-01-12 07:06:36] 2026-01-12 07:05:27,244 | INFO     | mean y: 2786357.5306122447
[2026-01-12 07:06:36] 2026-01-12 07:05:27,245 | INFO     | intersect: 53699549488.26328
[2026-01-12 07:06:36] 2026-01-12 07:05:27,245 | INFO     | chi2: 0.026004980412395868
[2026-01-12 07:06:36] 2026-01-12 07:05:27,245 | INFO     | current chi2=0.026004980412395868 (change=88.34977898288527 %)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,245 | INFO     | sum of square deviations: 249388862.0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,246 | INFO     | sum of deviations: -8728155659.0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,246 | INFO     | mean x: 1768198649.0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,246 | INFO     | mean y: 2785839.5376344086
[2026-01-12 07:06:36] 2026-01-12 07:05:27,246 | INFO     | intersect: 61886516013.92492
[2026-01-12 07:06:36] 2026-01-12 07:05:27,246 | INFO     | chi2: 0.021072910588472188
[2026-01-12 07:06:36] 2026-01-12 07:05:27,246 | INFO     | current chi2=0.021072910588472188 (change=18.965866329100162 %)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,246 | INFO     | left removable region: 30
[2026-01-12 07:06:36] 2026-01-12 07:05:27,246 | INFO     | sum of square deviations: 115715658.0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,247 | INFO     | sum of deviations: -5650688579.0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,249 | INFO     | mean x: 1768198923.5
[2026-01-12 07:06:36] 2026-01-12 07:05:27,249 | INFO     | mean y: 2777890.527777778
[2026-01-12 07:06:36] 2026-01-12 07:05:27,249 | INFO     | intersect: 86348408508.82788
[2026-01-12 07:06:36] 2026-01-12 07:05:27,249 | INFO     | chi2: 0.015119856152513763
[2026-01-12 07:06:36] 2026-01-12 07:05:27,250 | INFO     | current memory leak: -48.83 B/s (using 72 data points, chi2=0.02)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,252 | INFO     | could have reported an average CPU frequency of 2513 MHz (7 samples)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,252 | INFO     | ..............................
[2026-01-12 07:06:36] 2026-01-12 07:05:27,253 | INFO     | . Timing measurements:
[2026-01-12 07:06:36] 2026-01-12 07:05:27,253 | INFO     | . get job = 0 s
[2026-01-12 07:06:36] 2026-01-12 07:05:27,253 | INFO     | . initial setup = 3 s
[2026-01-12 07:06:36] 2026-01-12 07:05:27,253 | INFO     | . payload setup = 17 s
[2026-01-12 07:06:36] 2026-01-12 07:05:27,253 | INFO     | . stage-in = 0 s
[2026-01-12 07:06:36] 2026-01-12 07:05:27,253 | INFO     | . payload execution = 6592 s
[2026-01-12 07:06:36] 2026-01-12 07:05:27,253 | INFO     | . stage-out = 1 s
[2026-01-12 07:06:36] 2026-01-12 07:05:27,253 | INFO     | . log creation = 0 s
[2026-01-12 07:06:36] 2026-01-12 07:05:27,253 | INFO     | ..............................
[2026-01-12 07:06:36] 2026-01-12 07:05:27,458 | INFO     | 
[2026-01-12 07:06:36] 2026-01-12 07:05:27,458 | INFO     | job summary report
[2026-01-12 07:06:36] 2026-01-12 07:05:27,458 | INFO     | --------------------------------------------------
[2026-01-12 07:06:36] 2026-01-12 07:05:27,458 | INFO     | PanDA job id: 6963383880
[2026-01-12 07:06:36] 2026-01-12 07:05:27,458 | INFO     | task id: 47929288
[2026-01-12 07:06:36] 2026-01-12 07:05:27,458 | INFO     | errors: (none)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,458 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-12 07:06:36] 2026-01-12 07:05:27,458 | INFO     | pilot state: finished 
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | transexitcode: 0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | exeerrorcode: 0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | exeerrordiag: 
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | exitcode: 0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | exitmsg: OK
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | cpuconsumptiontime: 44506 s
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | nevents: 400
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | neventsw: 0
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | pid: 3742901
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | pgrp: 3742901
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | corecount: 12
[2026-01-12 07:06:36] 2026-01-12 07:05:27,459 | INFO     | event service: False
[2026-01-12 07:06:36] 2026-01-12 07:05:27,460 | INFO     | sizes: {0: 2283990, 1: 2283990, 12: 2284018, 15: 2284308, 22: 2284336, 6614: 2311707, 6616: 2320751, 6617: 2320807, 6632: 2321001}
[2026-01-12 07:06:36] 2026-01-12 07:05:27,460 | INFO     | --------------------------------------------------
[2026-01-12 07:06:36] 2026-01-12 07:05:27,460 | INFO     | 
[2026-01-12 07:06:36] 2026-01-12 07:05:27,460 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31420/slots/1
[2026-01-12 07:06:36] 2026-01-12 07:05:27,552 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,553 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,553 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,553 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,553 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,553 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,553 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,553 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,554 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,554 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,554 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,554 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,565 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,566 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,566 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,566 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,566 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,566 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,566 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,566 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-12 07:06:36] 2026-01-12 07:05:27,566 | INFO     | job 6963383880 has completed (purged errors)
[2026-01-12 07:06:36] 2026-01-12 07:05:27,566 | INFO     | overall cleanup function is called
[2026-01-12 07:06:36] 2026-01-12 07:05:28,579 | INFO     | --- collectZombieJob: --- 10, [3742901]
[2026-01-12 07:06:36] 2026-01-12 07:05:28,579 | INFO     | zombie collector waiting for pid 3742901
[2026-01-12 07:06:36] 2026-01-12 07:05:28,580 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-12 07:06:36] 2026-01-12 07:05:28,580 | INFO     | collected zombie processes
[2026-01-12 07:06:36] 2026-01-12 07:05:28,580 | INFO     | will attempt to kill all subprocesses of pid=3742901
[2026-01-12 07:06:36] 2026-01-12 07:05:29,635 | INFO     | process IDs to be killed: [3742901] (in reverse order)
[2026-01-12 07:06:36] 2026-01-12 07:05:30,096 | WARNING  | found no corresponding commands to process id(s)
[2026-01-12 07:06:36] 2026-01-12 07:05:30,099 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-12 07:06:36] 2026-01-12 07:05:30,121 | INFO     | did not find any defunct processes belonging to 3742901
[2026-01-12 07:06:36] 2026-01-12 07:05:30,136 | INFO     | did not find any defunct processes belonging to 3742901
[2026-01-12 07:06:36] 2026-01-12 07:05:30,136 | INFO     | ready for new job
[2026-01-12 07:06:36] 2026-01-12 07:05:30,136 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-12 07:06:36] 2026-01-12 07:05:30,138 | INFO     | ***************************************
[2026-01-12 07:06:36] 2026-01-12 07:05:30,138 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-12 07:06:36] 2026-01-12 07:05:30,139 | INFO     | ***************************************
[2026-01-12 07:06:36] 2026-01-12 07:05:30,139 | INFO     | 
[2026-01-12 07:06:36] 2026-01-12 07:05:30,148 | INFO     | architecture information:
[2026-01-12 07:06:36] 2026-01-12 07:05:30,148 | INFO     | executing command: cat /etc/os-release
[2026-01-12 07:06:36] 2026-01-12 07:05:30,175 | INFO     | cat /etc/os-release:
[2026-01-12 07:06:36] NAME="CentOS Linux"
[2026-01-12 07:06:36] VERSION="7 (Core)"
[2026-01-12 07:06:36] ID="centos"
[2026-01-12 07:06:36] ID_LIKE="rhel fedora"
[2026-01-12 07:06:36] VERSION_ID="7"
[2026-01-12 07:06:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-12 07:06:36] ANSI_COLOR="0;31"
[2026-01-12 07:06:36] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-12 07:06:36] HOME_URL="https://www.centos.org/"
[2026-01-12 07:06:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-12 07:06:36] 
[2026-01-12 07:06:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-12 07:06:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-12 07:06:36] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-12 07:06:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-12 07:06:36] 
[2026-01-12 07:06:36] 2026-01-12 07:05:30,175 | INFO     | ***************************************
[2026-01-12 07:06:36] 2026-01-12 07:05:30,678 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31420/slots/1
[2026-01-12 07:06:36] 2026-01-12 07:05:30,729 | INFO     | sufficient remaining disk space (385972436992 B)
[2026-01-12 07:06:36] 2026-01-12 07:05:30,732 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-12 07:06:36] 2026-01-12 07:05:30,732 | INFO     | current server update state: UPDATING_FINAL
[2026-01-12 07:06:36] 2026-01-12 07:05:30,732 | INFO     | update_server=False
[2026-01-12 07:06:36] 2026-01-12 07:05:30,733 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-12 07:06:36] 2026-01-12 07:05:30,736 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-12 07:06:36] 2026-01-12 07:05:30,736 | INFO     | aborting loop
[2026-01-12 07:06:36] 2026-01-12 07:05:31,609 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-12 07:06:36] 2026-01-12 07:05:31,645 | INFO     | all job control threads have been joined
[2026-01-12 07:06:36] 2026-01-12 07:05:31,655 | INFO     | all data control threads have been joined
[2026-01-12 07:06:36] 2026-01-12 07:05:31,697 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-12 07:06:36] 2026-01-12 07:05:31,739 | INFO     | [job] retrieve thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:31,742 | INFO     | [job] job monitor thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:31,892 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:31,968 | INFO     | [job] validate thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:31,983 | INFO     | [payload] failed_post thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:32,032 | INFO     | all payload control threads have been joined
[2026-01-12 07:06:36] 2026-01-12 07:05:32,161 | INFO     | [data] copytool_in thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:32,337 | INFO     | [payload] validate_pre thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:32,469 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-12 07:06:36] 2026-01-12 07:05:32,650 | INFO     | [job] control thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:32,660 | INFO     | [data] control thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:32,734 | INFO     | [payload] execute_payloads thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:32,755 | INFO     | [job] create_data_payload thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:32,923 | INFO     | [payload] validate_post thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:33,037 | INFO     | [payload] control thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:33,474 | INFO     | [job] queue monitor thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:33,616 | INFO     | [data] copytool_out thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:05:35,708 | INFO     | [data] queue_monitor thread has finished
[2026-01-12 07:06:36] 2026-01-12 07:06:01,131 | INFO     | PID=3733293 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-12 07:06:36] 2026-01-12 07:06:01,133 | INFO     | .. there are 10 such processes running
[2026-01-12 07:06:36] 2026-01-12 07:06:01,133 | INFO     | found 0 job(s) in 20 queues
[2026-01-12 07:06:36] 2026-01-12 07:06:01,133 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-12 07:06:36] 2026-01-12 07:06:01,133 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-12 07:06:36] 2026-01-12 07:06:28,726 | INFO     | [monitor] cgroup control has ended
[2026-01-12 07:06:36] 2026-01-12 07:06:30,775 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 128108607739712)>', '<ExcThread(monitor, started 128107902121728)>']
[2026-01-12 07:06:36] 2026-01-12 07:06:31,302 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-12 07:06:36] 2026-01-12 07:06:31,302 | INFO     | [monitor] control thread has ended
[2026-01-12 07:06:36] 2026-01-12 07:06:35,800 | INFO     | all workflow threads have been joined
[2026-01-12 07:06:36] 2026-01-12 07:06:35,800 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-12 07:06:36] 2026-01-12 07:06:35,801 | INFO     | traces error code: 0
[2026-01-12 07:06:36] 2026-01-12 07:06:35,801 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-12 07:06:36] 2026-01-12 07:06:36,242 [wrapper] ==== pilot stdout END ====
[2026-01-12 07:06:36] 2026-01-12 07:06:36,257 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-12 07:06:36] 2026-01-12 07:06:36,267 [wrapper] pilotpid: 3733293
[2026-01-12 07:06:36] 2026-01-12 07:06:36,277 [wrapper] Pilot exit status: 0
[2026-01-12 07:06:36] 2026-01-12 07:06:36,331 [wrapper] pandaids: 6963383880
[2026-01-12 07:06:36] 2026-01-12 07:06:36,499 [wrapper] cleanup supervisor_pilot 3852803 3733294
[2026-01-12 07:06:36] 2026-01-12 07:06:36,516 [wrapper] Test setup, not cleaning
[2026-01-12 07:06:36] 2026-01-12 07:06:36,536 [wrapper] apfmon messages muted
[2026-01-12 07:06:36] 2026-01-12 07:06:36,548 [wrapper] ==== wrapper stdout END ====
[2026-01-12 07:06:36] 2026-01-12 07:06:36,560 [wrapper] ==== wrapper stderr END ====
[2026-01-12 07:06:36]  *** Error codes and diagnostics ***
[2026-01-12 07:06:36]     "exeErrorCode": 0,
[2026-01-12 07:06:36]     "exeErrorDiag": "",
[2026-01-12 07:06:36]     "pilotErrorCode": 0,
[2026-01-12 07:06:36]     "pilotErrorDiag": "",
[2026-01-12 07:06:36]  *** Listing of results directory ***
[2026-01-12 07:06:36] total 436992
[2026-01-12 07:06:36] -rw-r--r-- 1 boinc boinc    579449 Jan  9 07:13 pilot3.tar.gz
[2026-01-12 07:06:36] -rwx------ 1 boinc boinc     36322 Jan  9 07:15 runpilot2-wrapper.sh
[2026-01-12 07:06:36] -rw-r--r-- 1 boinc boinc      5112 Jan  9 07:16 queuedata.json
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc       100 Jan 12 05:13 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-12 07:06:36] -rwxr-xr-x 1 boinc boinc      7986 Jan 12 05:13 run_atlas
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc       105 Jan 12 05:13 job.xml
[2026-01-12 07:06:36] -rw-r--r-- 2 boinc boinc 252924388 Jan 12 05:13 EVNT.47929286._000068.pool.root.1
[2026-01-12 07:06:36] -rw-r--r-- 2 boinc boinc     15847 Jan 12 05:13 start_atlas.sh
[2026-01-12 07:06:36] drwxrwx--x 2 boinc boinc      4096 Jan 12 05:13 shared
[2026-01-12 07:06:36] -rw-r--r-- 2 boinc boinc    592401 Jan 12 05:13 input.tar.gz
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc         0 Jan 12 05:13 boinc_setup_complete
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc      6557 Jan 12 05:13 init_data.xml
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc         0 Jan 12 05:13 boinc_lockfile
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc      2550 Jan 12 05:13 pandaJob.out
[2026-01-12 07:06:36] -rw------- 1 boinc boinc    990050 Jan 12 05:14 agis_schedconf.cvmfs.json
[2026-01-12 07:06:36] -rw------- 1 boinc boinc   1516240 Jan 12 05:14 agis_ddmendpoints.agis.ALL.json
[2026-01-12 07:06:36] drwx------ 5 boinc boinc      4096 Jan 12 05:14 pilot3
[2026-01-12 07:06:36] -rw------- 1 boinc boinc 187940818 Jan 12 07:04 HITS.47929288._002341.pool.root.1
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc       530 Jan 12 07:04 boinc_task_state.xml
[2026-01-12 07:06:36] -rw------- 1 boinc boinc        95 Jan 12 07:05 pilot_heartbeat.json
[2026-01-12 07:06:36] -rw------- 1 boinc boinc      1025 Jan 12 07:05 memory_monitor_summary.json
[2026-01-12 07:06:36] -rw------- 1 boinc boinc    412421 Jan 12 07:05 log.47929288._002341.job.log.tgz.1
[2026-01-12 07:06:36] -rw------- 1 boinc boinc      7723 Jan 12 07:05 heartbeat.json
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc        27 Jan 12 07:06 wrapper_checkpoint.txt
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc      8192 Jan 12 07:06 boinc_mmap_file
[2026-01-12 07:06:36] -rw------- 1 boinc boinc      4848 Jan 12 07:06 pilotlog.txt
[2026-01-12 07:06:36] -rw------- 1 boinc boinc    936071 Jan 12 07:06 log.47929288._002341.job.log.1
[2026-01-12 07:06:36] -rw------- 1 boinc boinc       357 Jan 12 07:06 output.list
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc       620 Jan 12 07:06 runtime_log
[2026-01-12 07:06:36] -rw------- 1 boinc boinc   1372160 Jan 12 07:06 result.tar.gz
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc      9167 Jan 12 07:06 runtime_log.err
[2026-01-12 07:06:36] -rw------- 1 boinc boinc       652 Jan 12 07:06 POkLDmWtLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmYYmKDmPBGTVo.diag
[2026-01-12 07:06:36] -rw-rw-r-- 1 boinc boinc     20931 Jan 12 07:06 stderr.txt
[2026-01-12 07:06:36] HITS file was successfully produced:
[2026-01-12 07:06:36] -rw------- 1 boinc boinc 187940818 Jan 12 07:04 shared/HITS.pool.root.1
[2026-01-12 07:06:36]  *** Contents of shared directory: ***
[2026-01-12 07:06:36] total 432480
[2026-01-12 07:06:36] -rw-r--r-- 2 boinc boinc 252924388 Jan 12 05:13 ATLAS.root_0
[2026-01-12 07:06:36] -rw-r--r-- 2 boinc boinc     15847 Jan 12 05:13 start_atlas.sh
[2026-01-12 07:06:36] -rw-r--r-- 2 boinc boinc    592401 Jan 12 05:13 input.tar.gz
[2026-01-12 07:06:36] -rw------- 1 boinc boinc 187940818 Jan 12 07:04 HITS.pool.root.1
[2026-01-12 07:06:36] -rw------- 1 boinc boinc   1372160 Jan 12 07:06 result.tar.gz
07:06:38 (3729086): run_atlas exited; CPU time 44828.187888
07:06:38 (3729086): called boinc_finish(0)

</stderr_txt>
]]>

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