Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
02:30:14 (11994): wrapper (7.7.26015): starting
02:30:14 (11994): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 02:30:14] Arguments: --nthreads 8
[2026-01-10 02:30:14] Threads: 8
[2026-01-10 02:30:14] Checking for CVMFS
[2026-01-10 02:30:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 02:30:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 02:30:15] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 02:30:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 02:30:15] 2.11.0.0 3913 129659 90148 154963 3 1 2582523 4096000 0 130560 2 3758552 98.747 10082111 589 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 02:30:15] CVMFS is ok
[2026-01-10 02:30:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 02:30:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 02:30:15] Further information can be found at the LHC@home message board.
[2026-01-10 02:30:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 02:30:15] Checking for apptainer binary...
[2026-01-10 02:30:15] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 02:30:15] apptainer is not installed, using version from CVMFS
[2026-01-10 02:30:15] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 02:30:15] WARNING: Environment variable TMPDIR already has value [/tmp/job_11009936/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node328
[2026-01-10 02:30:15] apptainer works
[2026-01-10 02:30:15] Set ATHENA_PROC_NUMBER=8
[2026-01-10 02:30:15] Set ATHENA_CORE_NUMBER=8
[2026-01-10 02:30:15] Starting ATLAS job with PandaID=6963383866
[2026-01-10 02:30:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11009936/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:01:10]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:01:10] 2026-01-10 06:00:36,424 | INFO     | preparing for final server update for job 6963383866 in state='finished'
[2026-01-10 07:01:10] 2026-01-10 06:00:36,425 | INFO     | this job has now completed (state=finished)
[2026-01-10 07:01:10] 2026-01-10 06:00:36,425 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 07:01:10] 2026-01-10 06:00:36,425 | INFO     | log transfer has been attempted: DONE
[2026-01-10 07:01:10] 2026-01-10 06:00:36,425 | INFO     | job 6963383866 has finished - writing final server update
[2026-01-10 07:01:10] 2026-01-10 06:00:36,425 | INFO     | total number of processed events: 750 (read)
[2026-01-10 07:01:10] 2026-01-10 06:00:36,425 | INFO     | executing command: lscpu
[2026-01-10 07:01:10] 2026-01-10 06:00:36,455 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 07:01:10] 2026-01-10 06:00:37,138 | INFO     | monitor loop #1183: job 0:6963383866 is in state 'finished'
[2026-01-10 07:01:10] 2026-01-10 06:00:37,138 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 07:01:10] 2026-01-10 06:00:37,308 | INFO     | time since job start (16202s) is within the limit (349056.0s)
[2026-01-10 07:01:10] 2026-01-10 06:00:38,174 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 07:01:10] 2026-01-10 06:00:38,189 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2396.759328125
[2026-01-10 07:01:10] 2026-01-10 06:00:38,194 | INFO     | using path: /tmp/job_11009936/atlas/pilot/slots/0/PanDA_Pilot-6963383866/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 07:01:10] 2026-01-10 06:00:38,194 | INFO     | extracted standard info from prmon json
[2026-01-10 07:01:10] 2026-01-10 06:00:38,194 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 07:01:10] 2026-01-10 06:00:38,195 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 07:01:10] 2026-01-10 06:00:38,197 | INFO     | fitting pss+swap vs Time
[2026-01-10 07:01:10] 2026-01-10 06:00:38,197 | INFO     | sum of square deviations: 5835918872.334591
[2026-01-10 07:01:10] 2026-01-10 06:00:38,198 | INFO     | sum of deviations: 1979440205642.9922
[2026-01-10 07:01:10] 2026-01-10 06:00:38,198 | INFO     | mean x: 1768016736.6954887
[2026-01-10 07:01:10] 2026-01-10 06:00:38,198 | INFO     | mean y: 5351771.8270676695
[2026-01-10 07:01:10] 2026-01-10 06:00:38,198 | INFO     | intersect: -599674576860.3479
[2026-01-10 07:01:10] 2026-01-10 06:00:38,199 | INFO     | chi2: 6.103138998138327
[2026-01-10 07:01:10] 2026-01-10 06:00:38,199 | INFO     | sum of square deviations: 5512979839.639885
[2026-01-10 07:01:10] 2026-01-10 06:00:38,200 | INFO     | sum of deviations: 2082045795410.1973
[2026-01-10 07:01:10] 2026-01-10 06:00:38,200 | INFO     | mean x: 1768016584.1992338
[2026-01-10 07:01:10] 2026-01-10 06:00:38,200 | INFO     | mean y: 5399790.977011494
[2026-01-10 07:01:10] 2026-01-10 06:00:38,200 | INFO     | intersect: -667708178423.0088
[2026-01-10 07:01:10] 2026-01-10 06:00:38,200 | INFO     | chi2: 3.038749405429474
[2026-01-10 07:01:10] 2026-01-10 06:00:38,200 | INFO     | current chi2=3.038749405429474 (change=50.210057376107606 %)
[2026-01-10 07:01:10] 2026-01-10 06:00:38,200 | INFO     | sum of square deviations: 5202180569.4375
[2026-01-10 07:01:10] 2026-01-10 06:00:38,201 | INFO     | sum of deviations: 2006196741355.0918
[2026-01-10 07:01:10] 2026-01-10 06:00:38,201 | INFO     | mean x: 1768016431.703125
[2026-01-10 07:01:10] 2026-01-10 06:00:38,201 | INFO     | mean y: 5362571.77734375
[2026-01-10 07:01:10] 2026-01-10 06:00:38,201 | INFO     | intersect: -681821951301.8345
[2026-01-10 07:01:10] 2026-01-10 06:00:38,202 | INFO     | chi2: 2.9060863321510433
[2026-01-10 07:01:10] 2026-01-10 06:00:38,202 | INFO     | current chi2=2.9060863321510433 (change=4.365712850207246 %)
[2026-01-10 07:01:10] 2026-01-10 06:00:38,202 | INFO     | right removable region: 255
[2026-01-10 07:01:10] 2026-01-10 06:00:38,202 | INFO     | sum of square deviations: 5512948119.639884
[2026-01-10 07:01:10] 2026-01-10 06:00:38,203 | INFO     | sum of deviations: 1835780883623.0881
[2026-01-10 07:01:10] 2026-01-10 06:00:38,203 | INFO     | mean x: 1768016889.1992338
[2026-01-10 07:01:10] 2026-01-10 06:00:38,203 | INFO     | mean y: 5419426.440613027
[2026-01-10 07:01:10] 2026-01-10 06:00:38,203 | INFO     | intersect: -588734314138.6064
[2026-01-10 07:01:10] 2026-01-10 06:00:38,203 | INFO     | chi2: 5.003810033083996
[2026-01-10 07:01:10] 2026-01-10 06:00:38,203 | INFO     | current chi2=5.003810033083996 (change=18.01251725365694 %)
[2026-01-10 07:01:10] 2026-01-10 06:00:38,203 | INFO     | left removable region: 10
[2026-01-10 07:01:10] 2026-01-10 06:00:38,203 | INFO     | sum of square deviations: 4559944630.963239
[2026-01-10 07:01:10] 2026-01-10 06:00:38,204 | INFO     | sum of deviations: 1753075050383.0972
[2026-01-10 07:01:10] 2026-01-10 06:00:38,204 | INFO     | mean x: 1768016706.212245
[2026-01-10 07:01:10] 2026-01-10 06:00:38,204 | INFO     | mean y: 5479277.767346939
[2026-01-10 07:01:10] 2026-01-10 06:00:38,204 | INFO     | intersect: -679710225004.0323
[2026-01-10 07:01:10] 2026-01-10 06:00:38,204 | INFO     | chi2: 1.6554545818282376
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | current memory leak: 384.45 B/s (using 245 data points, chi2=1.66)
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | could have reported an average CPU frequency of 2450 MHz (12 samples)
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | ..............................
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | . Timing measurements:
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | . get job = 0 s
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | . initial setup = 1 s
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | . payload setup = 2 s
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | . stage-in = 0 s
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | . payload execution = 16180 s
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | . stage-out = 1 s
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | . log creation = 0 s
[2026-01-10 07:01:10] 2026-01-10 06:00:38,205 | INFO     | ..............................
[2026-01-10 07:01:10] 2026-01-10 06:00:38,254 | INFO     | 
[2026-01-10 07:01:10] 2026-01-10 06:00:38,254 | INFO     | job summary report
[2026-01-10 07:01:10] 2026-01-10 06:00:38,254 | INFO     | --------------------------------------------------
[2026-01-10 07:01:10] 2026-01-10 06:00:38,254 | INFO     | PanDA job id: 6963383866
[2026-01-10 07:01:10] 2026-01-10 06:00:38,254 | INFO     | task id: 47962010
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | errors: (none)
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | pilot state: finished 
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | transexitcode: 0
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | exeerrorcode: 0
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | exeerrordiag: 
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | exitcode: 0
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | exitmsg: OK
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | cpuconsumptiontime: 106194 s
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | nevents: 750
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | neventsw: 0
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | pid: 22356
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | pgrp: 22356
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | corecount: 8
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | event service: False
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | sizes: {0: 2284468, 1: 2284778, 2: 2285040, 11: 2285068, 16186: 2317497, 16188: 2326705, 16190: 2326895}
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | --------------------------------------------------
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | 
[2026-01-10 07:01:10] 2026-01-10 06:00:38,255 | INFO     | executing command: ls -lF /tmp/job_11009936/atlas/pilot/slots/0
[2026-01-10 07:01:10] 2026-01-10 06:00:38,264 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | job 6963383866 has completed (purged errors)
[2026-01-10 07:01:10] 2026-01-10 06:00:38,265 | INFO     | overall cleanup function is called
[2026-01-10 07:01:10] 2026-01-10 06:00:39,273 | INFO     | --- collectZombieJob: --- 10, [22356]
[2026-01-10 07:01:10] 2026-01-10 06:00:39,273 | INFO     | zombie collector waiting for pid 22356
[2026-01-10 07:01:10] 2026-01-10 06:00:39,273 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:01:10] 2026-01-10 06:00:39,273 | INFO     | collected zombie processes
[2026-01-10 07:01:10] 2026-01-10 06:00:39,273 | INFO     | will attempt to kill all subprocesses of pid=22356
[2026-01-10 07:01:10] 2026-01-10 06:00:39,356 | INFO     | process IDs to be killed: [22356] (in reverse order)
[2026-01-10 07:01:10] 2026-01-10 06:00:39,385 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:01:10] 2026-01-10 06:00:39,385 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:01:10] 2026-01-10 06:00:39,388 | INFO     | did not find any defunct processes belonging to 22356
[2026-01-10 07:01:10] 2026-01-10 06:00:39,391 | INFO     | did not find any defunct processes belonging to 22356
[2026-01-10 07:01:10] 2026-01-10 06:00:39,391 | INFO     | ready for new job
[2026-01-10 07:01:10] 2026-01-10 06:00:39,391 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:01:10] 2026-01-10 06:00:39,392 | INFO     | ***************************************
[2026-01-10 07:01:10] 2026-01-10 06:00:39,392 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:01:10] 2026-01-10 06:00:39,392 | INFO     | ***************************************
[2026-01-10 07:01:10] 2026-01-10 06:00:39,392 | INFO     | 
[2026-01-10 07:01:10] 2026-01-10 06:00:39,407 | INFO     | architecture information:
[2026-01-10 07:01:10] 2026-01-10 06:00:39,407 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:01:10] 2026-01-10 06:00:39,413 | INFO     | cat /etc/os-release:
[2026-01-10 07:01:10] NAME="CentOS Linux"
[2026-01-10 07:01:10] VERSION="7 (Core)"
[2026-01-10 07:01:10] ID="centos"
[2026-01-10 07:01:10] ID_LIKE="rhel fedora"
[2026-01-10 07:01:10] VERSION_ID="7"
[2026-01-10 07:01:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:01:10] ANSI_COLOR="0;31"
[2026-01-10 07:01:10] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:01:10] HOME_URL="https://www.centos.org/"
[2026-01-10 07:01:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:01:10] 
[2026-01-10 07:01:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:01:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:01:10] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:01:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:01:10] 
[2026-01-10 07:01:10] 2026-01-10 06:00:39,413 | INFO     | ***************************************
[2026-01-10 07:01:10] 2026-01-10 06:00:39,916 | INFO     | executing command: df -mP /tmp/job_11009936/atlas/pilot/slots/0
[2026-01-10 07:01:10] 2026-01-10 06:00:39,921 | INFO     | sufficient remaining disk space (227468640256 B)
[2026-01-10 07:01:10] 2026-01-10 06:00:39,922 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:01:10] 2026-01-10 06:00:39,922 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:01:10] 2026-01-10 06:00:39,922 | INFO     | update_server=False
[2026-01-10 07:01:10] 2026-01-10 06:00:39,922 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:01:10] 2026-01-10 06:00:39,922 | INFO     | all job control threads have been joined
[2026-01-10 07:01:10] 2026-01-10 06:00:39,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:01:10] 2026-01-10 06:00:39,922 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:01:10] 2026-01-10 06:00:40,032 [wrapper] supervise_pilot (15 min periods counter: 19)
[2026-01-10 07:01:10] 2026-01-10 06:00:40,334 | INFO     | all data control threads have been joined
[2026-01-10 07:01:10] 2026-01-10 06:00:40,561 | INFO     | all payload control threads have been joined
[2026-01-10 07:01:10] 2026-01-10 06:00:40,646 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:01:10] 2026-01-10 06:00:40,646 | INFO     | aborting loop
[2026-01-10 07:01:10] 2026-01-10 06:00:40,927 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:40,927 | INFO     | [job] control thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:40,927 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:41,263 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:41,339 | INFO     | [data] control thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:41,537 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:41,566 | INFO     | [payload] control thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:41,651 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:41,753 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:41,765 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:41,927 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:42,214 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:42,366 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:42,370 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:01:10] 2026-01-10 06:00:42,390 | INFO     | [job] validate thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:42,406 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:00:46,375 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:01:10] 2026-01-10 06:01:01,313 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:01:10] 2026-01-10 06:01:03,348 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456067122944)>']
[2026-01-10 07:01:10] 2026-01-10 06:01:08,359 | INFO     | all workflow threads have been joined
[2026-01-10 07:01:10] 2026-01-10 06:01:08,359 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:01:10] 2026-01-10 06:01:08,359 | INFO     | traces error code: 0
[2026-01-10 07:01:10] 2026-01-10 06:01:08,360 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:01:10] 2026-01-10 06:01:10,480 | INFO     | PID=15757 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 07:01:10] 2026-01-10 06:01:10,480 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:01:10] 2026-01-10 06:01:10,480 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:01:10] 2026-01-10 06:01:10,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:01:10] 2026-01-10 06:01:10,481 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:01:10] 2026-01-10 06:01:10,481 | INFO     | [monitor] control thread has ended
[2026-01-10 07:01:10] 2026-01-10 06:01:10,533 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:01:10] 2026-01-10 06:01:10,534 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:01:10] 2026-01-10 06:01:10,536 [wrapper] pilotpid: 15757
[2026-01-10 07:01:10] 2026-01-10 06:01:10,537 [wrapper] Pilot exit status: 0
[2026-01-10 07:01:10] 2026-01-10 06:01:10,541 [wrapper] pandaids: 6963383866
[2026-01-10 07:01:10] 2026-01-10 06:01:10,560 [wrapper] cleanup supervisor_pilot  4319 15758
[2026-01-10 07:01:10] 2026-01-10 06:01:10,561 [wrapper] Test setup, not cleaning
[2026-01-10 07:01:10] 2026-01-10 06:01:10,562 [wrapper] apfmon messages muted
[2026-01-10 07:01:10] 2026-01-10 06:01:10,563 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:01:10] 2026-01-10 06:01:10,564 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:01:10]  *** Error codes and diagnostics ***
[2026-01-10 07:01:10]     "exeErrorCode": 0,
[2026-01-10 07:01:10]     "exeErrorDiag": "",
[2026-01-10 07:01:10]     "pilotErrorCode": 0,
[2026-01-10 07:01:10]     "pilotErrorDiag": "",
[2026-01-10 07:01:10]  *** Listing of results directory ***
[2026-01-10 07:01:10] total 1044476
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user    579449 Jan  9 08:13 pilot3.tar.gz
[2026-01-10 07:01:10] -rwx------ 1 mf493845 unix-user     36322 Jan  9 08:15 runpilot2-wrapper.sh
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user      5112 Jan  9 08:16 queuedata.json
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user       100 Jan 10 00:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:01:10] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan 10 00:50 run_atlas
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user       105 Jan 10 00:50 job.xml
[2026-01-10 07:01:10] -rw-r--r-- 2 mf493845 unix-user 393354735 Jan 10 02:30 EVNT.47962006._000130.pool.root.1
[2026-01-10 07:01:10] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:30 start_atlas.sh
[2026-01-10 07:01:10] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 02:30 shared
[2026-01-10 07:01:10] -rw-r--r-- 2 mf493845 unix-user    592613 Jan 10 02:30 input.tar.gz
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user      6389 Jan 10 02:30 init_data.xml
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user         0 Jan 10 02:30 boinc_setup_complete
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user      8192 Jan 10 02:30 boinc_mmap_file
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user         0 Jan 10 02:30 boinc_lockfile
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user      2893 Jan 10 02:30 pandaJob.out
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user    989382 Jan 10 02:30 agis_schedconf.cvmfs.json
[2026-01-10 07:01:10] drwx------ 5 mf493845 unix-user       440 Jan 10 02:30 pilot3
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user 664745063 Jan 10 07:00 HITS.47962010._001854.pool.root.1
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user      1026 Jan 10 07:00 memory_monitor_summary.json
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user   1516240 Jan 10 07:00 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user   1500013 Jan 10 07:00 log.47962010._001854.job.log.tgz.1
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user      8596 Jan 10 07:00 heartbeat.json
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user       745 Jan 10 07:01 pilotlog.txt
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user        95 Jan 10 07:01 pilot_heartbeat.json
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user   2275946 Jan 10 07:01 log.47962010._001854.job.log.1
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user       353 Jan 10 07:01 output.list
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user       620 Jan 10 07:01 runtime_log
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user   3799040 Jan 10 07:01 result.tar.gz
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user      9221 Jan 10 07:01 runtime_log.err
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user       651 Jan 10 07:01 rQIMDmUtLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlMhKDmwmgptm.diag
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user     21879 Jan 10 07:01 stderr.txt
[2026-01-10 07:01:10] HITS file was successfully produced:
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user 664745063 Jan 10 07:00 shared/HITS.pool.root.1
[2026-01-10 07:01:10]  *** Contents of shared directory: ***
[2026-01-10 07:01:10] total 1037612
[2026-01-10 07:01:10] -rw-r--r-- 2 mf493845 unix-user 393354735 Jan 10 02:30 ATLAS.root_0
[2026-01-10 07:01:10] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 02:30 start_atlas.sh
[2026-01-10 07:01:10] -rw-r--r-- 2 mf493845 unix-user    592613 Jan 10 02:30 input.tar.gz
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user 664745063 Jan 10 07:00 HITS.pool.root.1
[2026-01-10 07:01:10] -rw------- 1 mf493845 unix-user   3799040 Jan 10 07:01 result.tar.gz
07:01:12 (11994): run_atlas exited; CPU time 106315.973326
07:01:12 (11994): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN