Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:53:08 (1747617): wrapper (7.7.26015): starting
16:53:08 (1747617): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:53:08] Arguments: --nthreads 8
[2026-01-09 16:53:08] Threads: 8
[2026-01-09 16:53:08] Checking for CVMFS
[2026-01-09 16:53:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:53:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:53:09] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:53:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:53:09] 2.13.3.0 12210 22843 144232 154957 3 555 34136979 40960001 30023 16776704 0 74107384 99.803 36869049 47429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 16:53:09] CVMFS is ok
[2026-01-09 16:53:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:53:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:53:09] Further information can be found at the LHC@home message board.
[2026-01-09 16:53:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:53:09] Checking for apptainer binary...
[2026-01-09 16:53:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:53:09] Running /usr/bin/apptainer --version
[2026-01-09 16:53:09] apptainer version 1.4.5-2.el9
[2026-01-09 16:53:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:53:09] c-208-37.aglt2.org
[2026-01-09 16:53:09] apptainer works
[2026-01-09 16:53:09] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:53:09] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:53:09] Starting ATLAS job with PandaID=6963375837
[2026-01-09 16:53:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 03:51:37]  *** The last 200 lines of the pilot log: ***
[2026-01-10 03:51:37] 2026-01-10 08:51:00,217 | INFO     | maximum number of monitored processes: 16
[2026-01-10 03:51:37] 2026-01-10 08:51:01,920 | INFO     | time since job start (39458s) is within the limit (349056.0s)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,377 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-10 03:51:37] 2026-01-10 08:51:02,382 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3775.359710937499
[2026-01-10 03:51:37] 2026-01-10 08:51:02,396 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6963375837/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,397 | INFO     | extracted standard info from prmon json
[2026-01-10 03:51:37] 2026-01-10 08:51:02,397 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 03:51:37] 2026-01-10 08:51:02,397 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 03:51:37] 2026-01-10 08:51:02,404 | INFO     | fitting pss+swap vs Time
[2026-01-10 03:51:37] 2026-01-10 08:51:02,405 | INFO     | sum of square deviations: 83976151677.6626
[2026-01-10 03:51:37] 2026-01-10 08:51:02,410 | INFO     | sum of deviations: 1097849900696.5133
[2026-01-10 03:51:37] 2026-01-10 08:51:02,410 | INFO     | mean x: 1768015345.511592
[2026-01-10 03:51:37] 2026-01-10 08:51:02,410 | INFO     | mean y: 2843813.9319938174
[2026-01-10 03:51:37] 2026-01-10 08:51:02,410 | INFO     | intersect: -23111045459.65944
[2026-01-10 03:51:37] 2026-01-10 08:51:02,411 | INFO     | chi2: 6.721906350306007
[2026-01-10 03:51:37] 2026-01-10 08:51:02,411 | INFO     | sum of square deviations: 82044404428.64963
[2026-01-10 03:51:37] 2026-01-10 08:51:02,416 | INFO     | sum of deviations: 1259154893683.8647
[2026-01-10 03:51:37] 2026-01-10 08:51:02,416 | INFO     | mean x: 1768015193.0233645
[2026-01-10 03:51:37] 2026-01-10 08:51:02,416 | INFO     | mean y: 2856522.2757009347
[2026-01-10 03:51:37] 2026-01-10 08:51:02,416 | INFO     | intersect: -27131291112.8482
[2026-01-10 03:51:37] 2026-01-10 08:51:02,417 | INFO     | chi2: 4.550422446520131
[2026-01-10 03:51:37] 2026-01-10 08:51:02,417 | INFO     | current chi2=4.550422446520131 (change=32.30458430422824 %)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,417 | INFO     | sum of square deviations: 80142440006.59027
[2026-01-10 03:51:37] 2026-01-10 08:51:02,422 | INFO     | sum of deviations: 1248637553679.3887
[2026-01-10 03:51:37] 2026-01-10 08:51:02,422 | INFO     | mean x: 1768015040.5321822
[2026-01-10 03:51:37] 2026-01-10 08:51:02,422 | INFO     | mean y: 2855673.712715856
[2026-01-10 03:51:37] 2026-01-10 08:51:02,423 | INFO     | intersect: -27543223219.03042
[2026-01-10 03:51:37] 2026-01-10 08:51:02,423 | INFO     | chi2: 4.521311559171908
[2026-01-10 03:51:37] 2026-01-10 08:51:02,423 | INFO     | current chi2=4.521311559171908 (change=0.6397403249996197 %)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,423 | INFO     | right removable region: 636
[2026-01-10 03:51:37] 2026-01-10 08:51:02,424 | INFO     | sum of square deviations: 82043807848.64961
[2026-01-10 03:51:37] 2026-01-10 08:51:02,428 | INFO     | sum of deviations: 859996692628.2709
[2026-01-10 03:51:37] 2026-01-10 08:51:02,429 | INFO     | mean x: 1768015498.0233645
[2026-01-10 03:51:37] 2026-01-10 08:51:02,429 | INFO     | mean y: 2862578.1152647976
[2026-01-10 03:51:37] 2026-01-10 08:51:02,429 | INFO     | intersect: -18529766765.716988
[2026-01-10 03:51:37] 2026-01-10 08:51:02,429 | INFO     | chi2: 3.1435103602471113
[2026-01-10 03:51:37] 2026-01-10 08:51:02,429 | INFO     | current chi2=3.1435103602471113 (change=53.23483850524031 %)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,430 | INFO     | sum of square deviations: 80141363964.52452
[2026-01-10 03:51:37] 2026-01-10 08:51:02,435 | INFO     | sum of deviations: 749976033957.3486
[2026-01-10 03:51:37] 2026-01-10 08:51:02,435 | INFO     | mean x: 1768015650.533752
[2026-01-10 03:51:37] 2026-01-10 08:51:02,435 | INFO     | mean y: 2871382.193092622
[2026-01-10 03:51:37] 2026-01-10 08:51:02,435 | INFO     | intersect: -16542509179.944338
[2026-01-10 03:51:37] 2026-01-10 08:51:02,435 | INFO     | chi2: 2.382892399672005
[2026-01-10 03:51:37] 2026-01-10 08:51:02,435 | INFO     | current chi2=2.382892399672005 (change=24.196451527371913 %)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,436 | INFO     | left removable region: 20
[2026-01-10 03:51:37] 2026-01-10 08:51:02,436 | INFO     | sum of square deviations: 72473466236.77774
[2026-01-10 03:51:37] 2026-01-10 08:51:02,441 | INFO     | sum of deviations: 819127260795.2977
[2026-01-10 03:51:37] 2026-01-10 08:51:02,441 | INFO     | mean x: 1768015620.060065
[2026-01-10 03:51:37] 2026-01-10 08:51:02,441 | INFO     | mean y: 2890333.5324675324
[2026-01-10 03:51:37] 2026-01-10 08:51:02,441 | INFO     | intersect: -19980006402.37907
[2026-01-10 03:51:37] 2026-01-10 08:51:02,441 | INFO     | chi2: 0.08137993424877422
[2026-01-10 03:51:37] 2026-01-10 08:51:02,441 | INFO     | current memory leak: 11.30 B/s (using 616 data points, chi2=0.08)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,442 | INFO     | could have reported an average CPU frequency of 3790 MHz (25 samples)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,442 | INFO     | ..............................
[2026-01-10 03:51:37] 2026-01-10 08:51:02,442 | INFO     | . Timing measurements:
[2026-01-10 03:51:37] 2026-01-10 08:51:02,442 | INFO     | . get job = 0 s
[2026-01-10 03:51:37] 2026-01-10 08:51:02,443 | INFO     | . initial setup = 2 s
[2026-01-10 03:51:37] 2026-01-10 08:51:02,443 | INFO     | . payload setup = 10 s
[2026-01-10 03:51:37] 2026-01-10 08:51:02,443 | INFO     | . stage-in = 0 s
[2026-01-10 03:51:37] 2026-01-10 08:51:02,443 | INFO     | . payload execution = 39417 s
[2026-01-10 03:51:37] 2026-01-10 08:51:02,443 | INFO     | . stage-out = 2 s
[2026-01-10 03:51:37] 2026-01-10 08:51:02,443 | INFO     | . log creation = 0 s
[2026-01-10 03:51:37] 2026-01-10 08:51:02,443 | INFO     | ..............................
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | 
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | job summary report
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | --------------------------------------------------
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | PanDA job id: 6963375837
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | task id: 47962010
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | errors: (none)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | pilot state: finished 
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | transexitcode: 0
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | exeerrorcode: 0
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | exeerrordiag: 
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | exitcode: 0
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | exitmsg: OK
[2026-01-10 03:51:37] 2026-01-10 08:51:02,498 | INFO     | cpuconsumptiontime: 143809 s
[2026-01-10 03:51:37] 2026-01-10 08:51:02,499 | INFO     | nevents: 900
[2026-01-10 03:51:37] 2026-01-10 08:51:02,499 | INFO     | neventsw: 0
[2026-01-10 03:51:37] 2026-01-10 08:51:02,499 | INFO     | pid: 1768827
[2026-01-10 03:51:37] 2026-01-10 08:51:02,499 | INFO     | pgrp: 1768827
[2026-01-10 03:51:37] 2026-01-10 08:51:02,499 | INFO     | corecount: 8
[2026-01-10 03:51:37] 2026-01-10 08:51:02,499 | INFO     | event service: False
[2026-01-10 03:51:37] 2026-01-10 08:51:02,499 | INFO     | sizes: {0: 2286732, 1: 2286987, 7: 2287281, 11: 2287309, 39431: 2331292, 39434: 2339174, 39435: 2339358, 39441: 2339668}
[2026-01-10 03:51:37] 2026-01-10 08:51:02,499 | INFO     | --------------------------------------------------
[2026-01-10 03:51:37] 2026-01-10 08:51:02,499 | INFO     | 
[2026-01-10 03:51:37] 2026-01-10 08:51:02,499 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-10 03:51:37] 2026-01-10 08:51:02,520 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,521 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 03:51:37] 2026-01-10 08:51:02,522 | INFO     | job 6963375837 has completed (purged errors)
[2026-01-10 03:51:37] 2026-01-10 08:51:02,522 | INFO     | overall cleanup function is called
[2026-01-10 03:51:37] 2026-01-10 08:51:03,511 | INFO     | PID=1755758 has CPU usage=16.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 03:51:37] 2026-01-10 08:51:03,511 | INFO     | .. there are 21 such processes running
[2026-01-10 03:51:37] 2026-01-10 08:51:03,534 | INFO     | --- collectZombieJob: --- 10, [1768827]
[2026-01-10 03:51:37] 2026-01-10 08:51:03,534 | INFO     | zombie collector waiting for pid 1768827
[2026-01-10 03:51:37] 2026-01-10 08:51:03,534 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 03:51:37] 2026-01-10 08:51:03,534 | INFO     | collected zombie processes
[2026-01-10 03:51:37] 2026-01-10 08:51:03,534 | INFO     | will attempt to kill all subprocesses of pid=1768827
[2026-01-10 03:51:37] 2026-01-10 08:51:03,971 | INFO     | process IDs to be killed: [1768827] (in reverse order)
[2026-01-10 03:51:37] 2026-01-10 08:51:04,131 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 03:51:37] 2026-01-10 08:51:04,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 03:51:37] 2026-01-10 08:51:04,152 | INFO     | did not find any defunct processes belonging to 1768827
[2026-01-10 03:51:37] 2026-01-10 08:51:04,171 | INFO     | did not find any defunct processes belonging to 1768827
[2026-01-10 03:51:37] 2026-01-10 08:51:04,172 | INFO     | ready for new job
[2026-01-10 03:51:37] 2026-01-10 08:51:04,172 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 03:51:37] 2026-01-10 08:51:04,174 | INFO     | ***************************************
[2026-01-10 03:51:37] 2026-01-10 08:51:04,174 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 03:51:37] 2026-01-10 08:51:04,174 | INFO     | ***************************************
[2026-01-10 03:51:37] 2026-01-10 08:51:04,174 | INFO     | 
[2026-01-10 03:51:37] 2026-01-10 08:51:04,179 | INFO     | architecture information:
[2026-01-10 03:51:37] 2026-01-10 08:51:04,179 | INFO     | executing command: cat /etc/os-release
[2026-01-10 03:51:37] 2026-01-10 08:51:04,196 | INFO     | cat /etc/os-release:
[2026-01-10 03:51:37] NAME="CentOS Linux"
[2026-01-10 03:51:37] VERSION="7 (Core)"
[2026-01-10 03:51:37] ID="centos"
[2026-01-10 03:51:37] ID_LIKE="rhel fedora"
[2026-01-10 03:51:37] VERSION_ID="7"
[2026-01-10 03:51:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 03:51:37] ANSI_COLOR="0;31"
[2026-01-10 03:51:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 03:51:37] HOME_URL="https://www.centos.org/"
[2026-01-10 03:51:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 03:51:37] 
[2026-01-10 03:51:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 03:51:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 03:51:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 03:51:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 03:51:37] 
[2026-01-10 03:51:37] 2026-01-10 08:51:04,196 | INFO     | ***************************************
[2026-01-10 03:51:37] 2026-01-10 08:51:04,699 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-10 03:51:37] 2026-01-10 08:51:04,717 | INFO     | sufficient remaining disk space (171977998336 B)
[2026-01-10 03:51:37] 2026-01-10 08:51:04,717 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 03:51:37] 2026-01-10 08:51:04,718 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 03:51:37] 2026-01-10 08:51:04,718 | INFO     | update_server=False
[2026-01-10 03:51:37] 2026-01-10 08:51:04,718 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 03:51:37] 2026-01-10 08:51:04,718 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:51:37] 2026-01-10 08:51:04,718 | INFO     | aborting loop
[2026-01-10 03:51:37] 2026-01-10 08:51:05,081 | INFO     | all payload control threads have been joined
[2026-01-10 03:51:37] 2026-01-10 08:51:05,159 | INFO     | all job control threads have been joined
[2026-01-10 03:51:37] 2026-01-10 08:51:05,723 | INFO     | [job] retrieve thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:05,724 | INFO     | [job] job monitor thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:05,791 | INFO     | all data control threads have been joined
[2026-01-10 03:51:37] 2026-01-10 08:51:05,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 03:51:37] 2026-01-10 08:51:06,054 | INFO     | [data] copytool_in thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:06,086 | INFO     | [payload] control thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:06,087 | INFO     | [payload] failed_post thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:06,164 | INFO     | [job] control thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:06,236 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:06,267 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:06,421 | INFO     | [payload] validate_post thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:06,591 | INFO     | [job] validate thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:06,796 | INFO     | [data] control thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:06,835 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:07,074 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:07,478 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 03:51:37] 2026-01-10 08:51:07,521 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:51:37] 2026-01-10 08:51:07,849 | INFO     | [data] copytool_out thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:08,527 | INFO     | [job] queue monitor thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:11,486 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 03:51:37] 2026-01-10 08:51:31,021 | INFO     | [monitor] cgroup control has ended
[2026-01-10 03:51:37] 2026-01-10 08:51:31,821 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140310910195520)>', '<ExcThread(monitor, started 140310566905600)>']
[2026-01-10 03:51:37] 2026-01-10 08:51:36,209 | INFO     | PID=1755758 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 03:51:37] 2026-01-10 08:51:36,209 | INFO     | .. there are 20 such processes running
[2026-01-10 03:51:37] 2026-01-10 08:51:36,212 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 03:51:37] 2026-01-10 08:51:36,212 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 03:51:37] 2026-01-10 08:51:36,212 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 03:51:37] 2026-01-10 08:51:36,212 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 03:51:37] 2026-01-10 08:51:36,212 | INFO     | [monitor] control thread has ended
[2026-01-10 03:51:37] 2026-01-10 08:51:36,847 | INFO     | all workflow threads have been joined
[2026-01-10 03:51:37] 2026-01-10 08:51:36,847 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 03:51:37] 2026-01-10 08:51:36,847 | INFO     | traces error code: 0
[2026-01-10 03:51:37] 2026-01-10 08:51:36,847 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 03:51:37] 2026-01-10 08:51:36,982 [wrapper] ==== pilot stdout END ====
[2026-01-10 03:51:37] 2026-01-10 08:51:37,013 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 03:51:37] 2026-01-10 08:51:37,054 [wrapper] pilotpid: 1755758
[2026-01-10 03:51:37] 2026-01-10 08:51:37,060 [wrapper] Pilot exit status: 0
[2026-01-10 03:51:37] 2026-01-10 08:51:37,114 [wrapper] pandaids: 6963375837
[2026-01-10 03:51:37] 2026-01-10 08:51:37,285 [wrapper] cleanup supervisor_pilot 2095240 1755760
[2026-01-10 03:51:37] 2026-01-10 08:51:37,291 [wrapper] Test setup, not cleaning
[2026-01-10 03:51:37] 2026-01-10 08:51:37,297 [wrapper] apfmon messages muted
[2026-01-10 03:51:37] 2026-01-10 08:51:37,326 [wrapper] ==== wrapper stdout END ====
[2026-01-10 03:51:37] 2026-01-10 08:51:37,329 [wrapper] ==== wrapper stderr END ====
[2026-01-10 03:51:37]  *** Error codes and diagnostics ***
[2026-01-10 03:51:37]     "exeErrorCode": 0,
[2026-01-10 03:51:37]     "exeErrorDiag": "",
[2026-01-10 03:51:37]     "pilotErrorCode": 0,
[2026-01-10 03:51:37]     "pilotErrorDiag": "",
[2026-01-10 03:51:37]  *** Listing of results directory ***
[2026-01-10 03:51:37] total 1551812
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:13 pilot3.tar.gz
[2026-01-10 03:51:37] -rwx------. 1 boincer umatlas     36322 Jan  9 02:14 runpilot2-wrapper.sh
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:16 queuedata.json
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas       100 Jan  9 16:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 03:51:37] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 16:53 run_atlas
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas       105 Jan  9 16:53 job.xml
[2026-01-10 03:51:37] -rw-r--r--. 2 boincer umatlas 390344352 Jan  9 16:53 EVNT.47962006._000079.pool.root.1
[2026-01-10 03:51:37] -rw-r--r--. 2 boincer umatlas 393191470 Jan  9 16:53 EVNT.47962006._000080.pool.root.1
[2026-01-10 03:51:37] -rw-r--r--. 2 boincer umatlas     15897 Jan  9 16:53 start_atlas.sh
[2026-01-10 03:51:37] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 16:53 shared
[2026-01-10 03:51:37] -rw-r--r--. 2 boincer umatlas    592704 Jan  9 16:53 input.tar.gz
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas         0 Jan  9 16:53 boinc_lockfile
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas      3422 Jan  9 16:53 pandaJob.out
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas        57 Jan  9 16:53 setup.sh.local
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas    989398 Jan  9 16:53 agis_schedconf.cvmfs.json
[2026-01-10 03:51:37] drwx------. 5 boincer umatlas      4096 Jan  9 16:53 pilot3
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas       533 Jan 10 03:44 boinc_task_state.xml
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas      7185 Jan 10 03:45 init_data.xml
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas 787463548 Jan 10 03:50 HITS.47962010._001010.pool.root.1
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas        95 Jan 10 03:50 pilot_heartbeat.json
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas      1075 Jan 10 03:50 memory_monitor_summary.json
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas   1516240 Jan 10 03:50 agis_ddmendpoints.agis.ALL.json
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas   1882155 Jan 10 03:50 log.47962010._001010.job.log.tgz.1
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas      8819 Jan 10 03:51 heartbeat.json
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas        29 Jan 10 03:51 wrapper_checkpoint.txt
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas      4825 Jan 10 03:51 pilotlog.txt
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 03:51 boinc_mmap_file
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas   5183306 Jan 10 03:51 log.47962010._001010.job.log.1
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas       353 Jan 10 03:51 output.list
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas       620 Jan 10 03:51 runtime_log
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas   7086080 Jan 10 03:51 result.tar.gz
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas      9395 Jan 10 03:51 runtime_log.err
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas       665 Jan 10 03:51 0AeKDm6sLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUJhKDmy4vGbn.diag
[2026-01-10 03:51:37] -rw-r--r--. 1 boincer umatlas     21277 Jan 10 03:51 stderr.txt
[2026-01-10 03:51:37] HITS file was successfully produced:
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas 787463548 Jan 10 03:50 shared/HITS.pool.root.1
[2026-01-10 03:51:37]  *** Contents of shared directory: ***
[2026-01-10 03:51:37] total 1541708
[2026-01-10 03:51:37] -rw-r--r--. 2 boincer umatlas 390344352 Jan  9 16:53 ATLAS.root_0
[2026-01-10 03:51:37] -rw-r--r--. 2 boincer umatlas 393191470 Jan  9 16:53 ATLAS.root_1
[2026-01-10 03:51:37] -rw-r--r--. 2 boincer umatlas     15897 Jan  9 16:53 start_atlas.sh
[2026-01-10 03:51:37] -rw-r--r--. 2 boincer umatlas    592704 Jan  9 16:53 input.tar.gz
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas 787463548 Jan 10 03:50 HITS.pool.root.1
[2026-01-10 03:51:37] -rw-------. 1 boincer umatlas   7086080 Jan 10 03:51 result.tar.gz
03:51:39 (1747617): run_atlas exited; CPU time 144319.613125
03:51:39 (1747617): called boinc_finish(0)

</stderr_txt>
]]>

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