Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:58:35 (2249578): wrapper (7.7.26015): starting
16:58:35 (2249578): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:58:35] Arguments: --nthreads 8
[2026-01-09 16:58:35] Threads: 8
[2026-01-09 16:58:35] Checking for CVMFS
[2026-01-09 16:58:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:58:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:58:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:58:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:58:37] 2.13.3.0 12525 93845 165704 154957 3 419 36937983 40960000 20816 16776704 0 529482453 99.653 495582710 35665 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 16:58:37] CVMFS is ok
[2026-01-09 16:58:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:58:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:58:37] Further information can be found at the LHC@home message board.
[2026-01-09 16:58:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:58:37] Checking for apptainer binary...
[2026-01-09 16:58:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:58:37] Running /usr/bin/apptainer --version
[2026-01-09 16:58:37] apptainer version 1.4.5-2.el9
[2026-01-09 16:58:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:58:37] c7-4-30.aglt2.org
[2026-01-09 16:58:37] apptainer works
[2026-01-09 16:58:37] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:58:37] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:58:37] Starting ATLAS job with PandaID=6963161669
[2026-01-09 16:58:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 21:38:49]  *** The last 200 lines of the pilot log: ***
[2026-01-09 21:38:49] 2026-01-10 02:38:07,670 | INFO     | monitor loop #1088: job 0:6963161669 is in state 'finished'
[2026-01-09 21:38:49] 2026-01-10 02:38:07,670 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:38:49] 2026-01-10 02:38:09,625 | INFO     | time since job start (16746s) is within the limit (349056.0s)
[2026-01-09 21:38:49] 2026-01-10 02:38:10,181 | INFO     | monitor loop #1089: job 0:6963161669 is in state 'finished'
[2026-01-09 21:38:49] 2026-01-10 02:38:10,181 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:38:49] 2026-01-10 02:38:11,632 | INFO     | time since job start (16748s) is within the limit (349056.0s)
[2026-01-09 21:38:49] 2026-01-10 02:38:12,685 | INFO     | monitor loop #1090: job 0:6963161669 is in state 'finished'
[2026-01-09 21:38:49] 2026-01-10 02:38:12,685 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 21:38:49] 2026-01-10 02:38:13,640 | INFO     | time since job start (16750s) is within the limit (349056.0s)
[2026-01-09 21:38:49] 2026-01-10 02:38:14,735 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 21:38:49] 2026-01-10 02:38:14,753 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3243.500697916668
[2026-01-09 21:38:49] 2026-01-10 02:38:14,826 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6963161669/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 21:38:49] 2026-01-10 02:38:14,827 | INFO     | extracted standard info from prmon json
[2026-01-09 21:38:49] 2026-01-10 02:38:14,844 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 21:38:49] 2026-01-10 02:38:14,844 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 21:38:49] 2026-01-10 02:38:14,845 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 21:38:49] 2026-01-10 02:38:14,845 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 21:38:49] 2026-01-10 02:38:14,875 | INFO     | fitting pss+swap vs Time
[2026-01-09 21:38:49] 2026-01-10 02:38:14,876 | INFO     | sum of square deviations: 6307950527.985346
[2026-01-09 21:38:49] 2026-01-10 02:38:14,878 | INFO     | sum of deviations: 81287324228.57509
[2026-01-09 21:38:49] 2026-01-10 02:38:14,878 | INFO     | mean x: 1768004312.6739926
[2026-01-09 21:38:49] 2026-01-10 02:38:14,878 | INFO     | mean y: 2459387.545787546
[2026-01-09 21:38:49] 2026-01-10 02:38:14,878 | INFO     | intersect: -22780905695.019386
[2026-01-09 21:38:49] 2026-01-10 02:38:14,878 | INFO     | chi2: 3.7050737404233214
[2026-01-09 21:38:49] 2026-01-10 02:38:14,879 | INFO     | sum of square deviations: 5967615666.757436
[2026-01-09 21:38:49] 2026-01-10 02:38:14,893 | INFO     | sum of deviations: 98147475493.3879
[2026-01-09 21:38:49] 2026-01-10 02:38:14,893 | INFO     | mean x: 1768004160.175373
[2026-01-09 21:38:49] 2026-01-10 02:38:14,893 | INFO     | mean y: 2466818.119402985
[2026-01-09 21:38:49] 2026-01-10 02:38:14,893 | INFO     | intersect: -29075334882.42257
[2026-01-09 21:38:49] 2026-01-10 02:38:14,893 | INFO     | chi2: 2.890872452368909
[2026-01-09 21:38:49] 2026-01-10 02:38:14,894 | INFO     | current chi2=2.890872452368909 (change=21.975305893949262 %)
[2026-01-09 21:38:49] 2026-01-10 02:38:14,894 | INFO     | right removable region: 267
[2026-01-09 21:38:49] 2026-01-10 02:38:14,894 | INFO     | sum of square deviations: 5967553140.671636
[2026-01-09 21:38:49] 2026-01-10 02:38:14,912 | INFO     | sum of deviations: 10889889249.932835
[2026-01-09 21:38:49] 2026-01-10 02:38:14,912 | INFO     | mean x: 1768004465.186567
[2026-01-09 21:38:49] 2026-01-10 02:38:14,912 | INFO     | mean y: 2490852.481343284
[2026-01-09 21:38:49] 2026-01-10 02:38:14,912 | INFO     | intersect: -3223852066.5364704
[2026-01-09 21:38:49] 2026-01-10 02:38:14,912 | INFO     | chi2: 1.1316903143410801
[2026-01-09 21:38:49] 2026-01-10 02:38:14,913 | INFO     | current chi2=1.1316903143410801 (change=69.45566016692074 %)
[2026-01-09 21:38:49] 2026-01-10 02:38:14,913 | INFO     | sum of square deviations: 5639621103.26992
[2026-01-09 21:38:49] 2026-01-10 02:38:14,915 | INFO     | sum of deviations: -8108921764.475279
[2026-01-09 21:38:49] 2026-01-10 02:38:14,915 | INFO     | mean x: 1768004617.6996198
[2026-01-09 21:38:49] 2026-01-10 02:38:14,915 | INFO     | mean y: 2499665.247148289
[2026-01-09 21:38:49] 2026-01-10 02:38:14,915 | INFO     | intersect: 2544622772.745399
[2026-01-09 21:38:49] 2026-01-10 02:38:14,935 | INFO     | chi2: 0.9487709784374435
[2026-01-09 21:38:49] 2026-01-10 02:38:14,936 | INFO     | current chi2=0.9487709784374435 (change=16.163373812220026 %)
[2026-01-09 21:38:49] 2026-01-10 02:38:14,936 | INFO     | left removable region: 20
[2026-01-09 21:38:49] 2026-01-10 02:38:14,936 | INFO     | sum of square deviations: 4671446660.161956
[2026-01-09 21:38:49] 2026-01-10 02:38:14,938 | INFO     | sum of deviations: -8877258790.85426
[2026-01-09 21:38:49] 2026-01-10 02:38:14,944 | INFO     | mean x: 1768004739.7165992
[2026-01-09 21:38:49] 2026-01-10 02:38:14,944 | INFO     | mean y: 2517695.7449392714
[2026-01-09 21:38:49] 2026-01-10 02:38:14,944 | INFO     | intersect: 3362298243.335959
[2026-01-09 21:38:49] 2026-01-10 02:38:14,945 | INFO     | chi2: 0.013289631117535334
[2026-01-09 21:38:49] 2026-01-10 02:38:14,945 | INFO     | current memory leak: -1.90 B/s (using 247 data points, chi2=0.01)
[2026-01-09 21:38:49] 2026-01-10 02:38:14,945 | INFO     | could have reported an average CPU frequency of 3206 MHz (13 samples)
[2026-01-09 21:38:49] 2026-01-10 02:38:14,945 | INFO     | ..............................
[2026-01-09 21:38:49] 2026-01-10 02:38:14,945 | INFO     | . Timing measurements:
[2026-01-09 21:38:49] 2026-01-10 02:38:14,946 | INFO     | . get job = 0 s
[2026-01-09 21:38:49] 2026-01-10 02:38:14,946 | INFO     | . initial setup = 3 s
[2026-01-09 21:38:49] 2026-01-10 02:38:14,946 | INFO     | . payload setup = 25 s
[2026-01-09 21:38:49] 2026-01-10 02:38:14,946 | INFO     | . stage-in = 0 s
[2026-01-09 21:38:49] 2026-01-10 02:38:14,946 | INFO     | . payload execution = 16644 s
[2026-01-09 21:38:49] 2026-01-10 02:38:14,946 | INFO     | . stage-out = 3 s
[2026-01-09 21:38:49] 2026-01-10 02:38:14,946 | INFO     | . log creation = 0 s
[2026-01-09 21:38:49] 2026-01-10 02:38:14,946 | INFO     | ..............................
[2026-01-09 21:38:49] 2026-01-10 02:38:15,287 | INFO     | 
[2026-01-09 21:38:49] 2026-01-10 02:38:15,288 | INFO     | job summary report
[2026-01-09 21:38:49] 2026-01-10 02:38:15,288 | INFO     | --------------------------------------------------
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | PanDA job id: 6963161669
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | task id: 47898826
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | errors: (none)
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | pilot state: finished 
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | transexitcode: 0
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | exeerrorcode: 0
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | exeerrordiag: 
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | exitcode: 0
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | exitmsg: OK
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | cpuconsumptiontime: 44894 s
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | nevents: 400
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | neventsw: 0
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | pid: 2261029
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | pgrp: 2261029
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | corecount: 8
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | event service: False
[2026-01-09 21:38:49] 2026-01-10 02:38:15,289 | INFO     | sizes: {0: 2283971, 11: 2283971, 14: 2284261, 22: 2284289, 16674: 2316196, 16675: 2316195, 16679: 2325377, 16682: 2325433, 16718: 2325627}
[2026-01-09 21:38:49] 2026-01-10 02:38:15,290 | INFO     | --------------------------------------------------
[2026-01-09 21:38:49] 2026-01-10 02:38:15,290 | INFO     | 
[2026-01-09 21:38:49] 2026-01-10 02:38:15,290 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-09 21:38:49] 2026-01-10 02:38:15,392 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,392 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,392 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,392 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,393 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 21:38:49] 2026-01-10 02:38:15,394 | INFO     | job 6963161669 has completed (purged errors)
[2026-01-09 21:38:49] 2026-01-10 02:38:15,394 | INFO     | overall cleanup function is called
[2026-01-09 21:38:49] 2026-01-10 02:38:16,422 | INFO     | --- collectZombieJob: --- 10, [2261029]
[2026-01-09 21:38:49] 2026-01-10 02:38:16,422 | INFO     | zombie collector waiting for pid 2261029
[2026-01-09 21:38:49] 2026-01-10 02:38:16,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 21:38:49] 2026-01-10 02:38:16,423 | INFO     | collected zombie processes
[2026-01-09 21:38:49] 2026-01-10 02:38:16,423 | INFO     | will attempt to kill all subprocesses of pid=2261029
[2026-01-09 21:38:49] 2026-01-10 02:38:17,487 | INFO     | process IDs to be killed: [2261029] (in reverse order)
[2026-01-09 21:38:49] 2026-01-10 02:38:17,804 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 21:38:49] 2026-01-10 02:38:17,805 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 21:38:49] 2026-01-10 02:38:17,818 | INFO     | did not find any defunct processes belonging to 2261029
[2026-01-09 21:38:49] 2026-01-10 02:38:17,829 | INFO     | did not find any defunct processes belonging to 2261029
[2026-01-09 21:38:49] 2026-01-10 02:38:17,829 | INFO     | ready for new job
[2026-01-09 21:38:49] 2026-01-10 02:38:17,829 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 21:38:49] 2026-01-10 02:38:17,833 | INFO     | ***************************************
[2026-01-09 21:38:49] 2026-01-10 02:38:17,833 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 21:38:49] 2026-01-10 02:38:17,833 | INFO     | ***************************************
[2026-01-09 21:38:49] 2026-01-10 02:38:17,833 | INFO     | 
[2026-01-09 21:38:49] 2026-01-10 02:38:17,846 | INFO     | architecture information:
[2026-01-09 21:38:49] 2026-01-10 02:38:17,847 | INFO     | executing command: cat /etc/os-release
[2026-01-09 21:38:49] 2026-01-10 02:38:17,894 | INFO     | cat /etc/os-release:
[2026-01-09 21:38:49] NAME="CentOS Linux"
[2026-01-09 21:38:49] VERSION="7 (Core)"
[2026-01-09 21:38:49] ID="centos"
[2026-01-09 21:38:49] ID_LIKE="rhel fedora"
[2026-01-09 21:38:49] VERSION_ID="7"
[2026-01-09 21:38:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 21:38:49] ANSI_COLOR="0;31"
[2026-01-09 21:38:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 21:38:49] HOME_URL="https://www.centos.org/"
[2026-01-09 21:38:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 21:38:49] 
[2026-01-09 21:38:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 21:38:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 21:38:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 21:38:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 21:38:49] 
[2026-01-09 21:38:49] 2026-01-10 02:38:17,895 | INFO     | ***************************************
[2026-01-09 21:38:49] 2026-01-10 02:38:18,401 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-09 21:38:49] 2026-01-10 02:38:18,514 | INFO     | sufficient remaining disk space (127241551872 B)
[2026-01-09 21:38:49] 2026-01-10 02:38:18,515 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 21:38:49] 2026-01-10 02:38:18,515 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 21:38:49] 2026-01-10 02:38:18,515 | INFO     | update_server=False
[2026-01-09 21:38:49] 2026-01-10 02:38:18,515 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 21:38:49] 2026-01-10 02:38:18,750 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:38:49] 2026-01-10 02:38:18,750 | INFO     | aborting loop
[2026-01-09 21:38:49] 2026-01-10 02:38:19,161 | INFO     | all data control threads have been joined
[2026-01-09 21:38:49] 2026-01-10 02:38:19,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 21:38:49] 2026-01-10 02:38:19,370 | INFO     | all payload control threads have been joined
[2026-01-09 21:38:49] 2026-01-10 02:38:19,521 | INFO     | [job] retrieve thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:19,636 | INFO     | all job control threads have been joined
[2026-01-09 21:38:49] 2026-01-10 02:38:19,756 | INFO     | [job] job monitor thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:19,850 | INFO     | [payload] validate_post thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:19,978 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:20,166 | INFO     | [data] control thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:20,218 | INFO     | [data] copytool_in thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:20,279 | INFO     | [payload] failed_post thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:20,319 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 21:38:49] 2026-01-10 02:38:20,375 | INFO     | [payload] control thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:20,541 | INFO     | [job] validate thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:20,598 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:20,602 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:20,642 | INFO     | [job] control thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:20,782 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:21,111 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 21:38:49] 2026-01-10 02:38:21,245 | INFO     | [data] copytool_out thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:21,324 | INFO     | [job] queue monitor thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:25,120 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 21:38:49] 2026-01-10 02:38:32,488 | INFO     | [monitor] cgroup control has ended
[2026-01-09 21:38:49] 2026-01-10 02:38:32,571 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140638737491776)>', '<ExcThread(monitor, started 140637982660352)>']
[2026-01-09 21:38:49] 2026-01-10 02:38:37,597 | INFO     | all workflow threads have been joined
[2026-01-09 21:38:49] 2026-01-10 02:38:37,610 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 21:38:49] 2026-01-10 02:38:37,610 | INFO     | traces error code: 0
[2026-01-09 21:38:49] 2026-01-10 02:38:37,611 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 21:38:49] 2026-01-10 02:38:47,853 | INFO     | PID=2253407 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 21:38:49] 2026-01-10 02:38:47,874 | INFO     | .. there are 16 such processes running
[2026-01-09 21:38:49] 2026-01-10 02:38:47,874 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 21:38:49] 2026-01-10 02:38:47,875 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 21:38:49] 2026-01-10 02:38:47,875 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 21:38:49] 2026-01-10 02:38:47,875 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 21:38:49] 2026-01-10 02:38:47,875 | INFO     | [monitor] control thread has ended
[2026-01-09 21:38:49] 2026-01-10 02:38:48,142 [wrapper] ==== pilot stdout END ====
[2026-01-09 21:38:49] 2026-01-10 02:38:48,165 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 21:38:49] 2026-01-10 02:38:48,194 [wrapper] pilotpid: 2253407
[2026-01-09 21:38:49] 2026-01-10 02:38:48,204 [wrapper] Pilot exit status: 0
[2026-01-09 21:38:49] 2026-01-10 02:38:48,289 [wrapper] pandaids: 6963161669
[2026-01-09 21:38:49] 2026-01-10 02:38:48,406 [wrapper] cleanup supervisor_pilot 3021357 2253408
[2026-01-09 21:38:49] 2026-01-10 02:38:48,409 [wrapper] Test setup, not cleaning
[2026-01-09 21:38:49] 2026-01-10 02:38:48,416 [wrapper] apfmon messages muted
[2026-01-09 21:38:49] 2026-01-10 02:38:48,440 [wrapper] ==== wrapper stdout END ====
[2026-01-09 21:38:49] 2026-01-10 02:38:48,469 [wrapper] ==== wrapper stderr END ====
[2026-01-09 21:38:49]  *** Error codes and diagnostics ***
[2026-01-09 21:38:49]     "exeErrorCode": 0,
[2026-01-09 21:38:49]     "exeErrorDiag": "",
[2026-01-09 21:38:49]     "pilotErrorCode": 0,
[2026-01-09 21:38:49]     "pilotErrorDiag": "",
[2026-01-09 21:38:49]  *** Listing of results directory ***
[2026-01-09 21:38:49] total 444676
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 21:38:49] -rwx------. 1 boincer umatlas     36322 Jan  8 16:49 runpilot2-wrapper.sh
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:51 queuedata.json
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas       100 Jan  9 16:58 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 21:38:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 16:58 run_atlas
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas       105 Jan  9 16:58 job.xml
[2026-01-09 21:38:49] -rw-r--r--. 2 boincer umatlas 223201135 Jan  9 16:58 EVNT.47898824._001289.pool.root.1
[2026-01-09 21:38:49] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:58 start_atlas.sh
[2026-01-09 21:38:49] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 16:58 shared
[2026-01-09 21:38:49] -rw-r--r--. 2 boincer umatlas    592404 Jan  9 16:58 input.tar.gz
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas         0 Jan  9 16:58 boinc_lockfile
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 16:58 pandaJob.out
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas        57 Jan  9 16:58 setup.sh.local
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas    989398 Jan  9 16:59 agis_schedconf.cvmfs.json
[2026-01-09 21:38:49] drwx------. 5 boincer umatlas      4096 Jan  9 16:59 pilot3
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas 222868693 Jan  9 21:36 HITS.47898826._033331.pool.root.1
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas       531 Jan  9 21:36 boinc_task_state.xml
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas      6947 Jan  9 21:37 init_data.xml
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas      1039 Jan  9 21:37 memory_monitor_summary.json
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas   1516240 Jan  9 21:37 agis_ddmendpoints.agis.ALL.json
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas    482814 Jan  9 21:37 log.47898826._033331.job.log.tgz.1
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas        95 Jan  9 21:38 pilot_heartbeat.json
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas      7781 Jan  9 21:38 heartbeat.json
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas        28 Jan  9 21:38 wrapper_checkpoint.txt
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas       823 Jan  9 21:38 pilotlog.txt
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas   2202178 Jan  9 21:38 log.47898826._033331.job.log.1
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas       357 Jan  9 21:38 output.list
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 21:38 boinc_mmap_file
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas       620 Jan  9 21:38 runtime_log
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas   2703360 Jan  9 21:38 result.tar.gz
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 21:38 runtime_log.err
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas       657 Jan  9 21:38 3uAODmY3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmRclKDmhEFqtn.diag
[2026-01-09 21:38:49] -rw-r--r--. 1 boincer umatlas     21429 Jan  9 21:38 stderr.txt
[2026-01-09 21:38:49] HITS file was successfully produced:
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas 222868693 Jan  9 21:36 shared/HITS.pool.root.1
[2026-01-09 21:38:49]  *** Contents of shared directory: ***
[2026-01-09 21:38:49] total 438860
[2026-01-09 21:38:49] -rw-r--r--. 2 boincer umatlas 223201135 Jan  9 16:58 ATLAS.root_0
[2026-01-09 21:38:49] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:58 start_atlas.sh
[2026-01-09 21:38:49] -rw-r--r--. 2 boincer umatlas    592404 Jan  9 16:58 input.tar.gz
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas 222868693 Jan  9 21:36 HITS.pool.root.1
[2026-01-09 21:38:49] -rw-------. 1 boincer umatlas   2703360 Jan  9 21:38 result.tar.gz
21:39:11 (2249578): run_atlas exited; CPU time 45461.026673
21:39:11 (2249578): called boinc_finish(0)

</stderr_txt>
]]>

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