Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
15:29:36 (13742): wrapper (7.7.26015): starting
15:29:36 (13742): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 15:29:36] Arguments: --nthreads 8
[2026-01-10 15:29:36] Threads: 8
[2026-01-10 15:29:36] Checking for CVMFS
[2026-01-10 15:29:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 15:29:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 15:29:38] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 15:29:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 15:29:40] 2.11.2.0 23641 36975 121064 154982 3 137 18854910 25165824 96 130560 0 16808659 99.801 10170066 2972 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 15:29:40] CVMFS is ok
[2026-01-10 15:29:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 15:29:40] Checking for apptainer binary...
[2026-01-10 15:29:40] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 15:29:40] Running /usr/bin/apptainer --version
[2026-01-10 15:29:40] apptainer version 1.3.2-1.el7
[2026-01-10 15:29:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 15:29:46] cg-vwn478.simple-grid.lan
[2026-01-10 15:29:46] apptainer works
[2026-01-10 15:29:46] Set ATHENA_PROC_NUMBER=8
[2026-01-10 15:29:46] Set ATHENA_CORE_NUMBER=8
[2026-01-10 15:29:46] Starting ATLAS job with PandaID=6963379703
[2026-01-10 15:29:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 16:20:02]  *** The last 200 lines of the pilot log: ***
[2026-01-11 16:20:02] 2026-01-11 15:18:44,591 | INFO     | time since job start (89068s) is within the limit (349056.0s)
[2026-01-11 16:20:02] 2026-01-11 15:18:44,634 | INFO     | monitor loop #6034: job 0:6963379703 is in state 'finished'
[2026-01-11 16:20:02] 2026-01-11 15:18:44,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:20:02] 2026-01-11 15:18:45,766 | INFO     | PID=17474 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 16:20:02] 2026-01-11 15:18:45,766 | INFO     | .. there are 2 such processes running
[2026-01-11 16:20:02] 2026-01-11 15:18:46,767 | INFO     | time since job start (89070s) is within the limit (349056.0s)
[2026-01-11 16:20:02] 2026-01-11 15:18:47,149 | INFO     | monitor loop #6035: job 0:6963379703 is in state 'finished'
[2026-01-11 16:20:02] 2026-01-11 15:18:47,150 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:20:02] 2026-01-11 15:18:48,773 | INFO     | time since job start (89072s) is within the limit (349056.0s)
[2026-01-11 16:20:02] 2026-01-11 15:18:49,658 | INFO     | monitor loop #6036: job 0:6963379703 is in state 'finished'
[2026-01-11 16:20:02] 2026-01-11 15:18:49,659 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:20:02] 2026-01-11 15:18:50,780 | INFO     | time since job start (89074s) is within the limit (349056.0s)
[2026-01-11 16:20:02] 2026-01-11 15:18:52,163 | INFO     | monitor loop #6037: job 0:6963379703 is in state 'finished'
[2026-01-11 16:20:02] 2026-01-11 15:18:52,164 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 16:20:02] 2026-01-11 15:18:52,344 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 16:20:02] 2026-01-11 15:18:52,345 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-11 16:20:02] 2026-01-11 15:18:52,347 | INFO     | using path: /var/lib/boinc/slots/4/PanDA_Pilot-6963379703/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 16:20:02] 2026-01-11 15:18:52,347 | INFO     | extracted standard info from prmon json
[2026-01-11 16:20:02] 2026-01-11 15:18:52,347 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 16:20:02] 2026-01-11 15:18:52,347 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 16:20:02] 2026-01-11 15:18:52,381 | INFO     | fitting pss+swap vs Time
[2026-01-11 16:20:02] 2026-01-11 15:18:52,390 | INFO     | sum of square deviations: 945327044105.3971
[2026-01-11 16:20:02] 2026-01-11 15:18:52,471 | INFO     | sum of deviations: 3785618071644.8145
[2026-01-11 16:20:02] 2026-01-11 15:18:52,471 | INFO     | mean x: 1768100405.4724138
[2026-01-11 16:20:02] 2026-01-11 15:18:52,472 | INFO     | mean y: 2792199.9579310343
[2026-01-11 16:20:02] 2026-01-11 15:18:52,472 | INFO     | intersect: -7077670470.792271
[2026-01-11 16:20:02] 2026-01-11 15:18:52,473 | INFO     | chi2: 35.35297557719109
[2026-01-11 16:20:02] 2026-01-11 15:18:52,475 | INFO     | sum of square deviations: 935581905378.1503
[2026-01-11 16:20:02] 2026-01-11 15:18:52,538 | INFO     | sum of deviations: 4249210022592.505
[2026-01-11 16:20:02] 2026-01-11 15:18:52,538 | INFO     | mean x: 1768100252.9757786
[2026-01-11 16:20:02] 2026-01-11 15:18:52,538 | INFO     | mean y: 2799453.5577854672
[2026-01-11 16:20:02] 2026-01-11 15:18:52,538 | INFO     | intersect: -8027528273.715169
[2026-01-11 16:20:02] 2026-01-11 15:18:52,540 | INFO     | chi2: 32.188195320248866
[2026-01-11 16:20:02] 2026-01-11 15:18:52,540 | INFO     | current chi2=32.188195320248866 (change=8.951948754729615 %)
[2026-01-11 16:20:02] 2026-01-11 15:18:52,540 | INFO     | right removable region: 1444
[2026-01-11 16:20:02] 2026-01-11 15:18:52,542 | INFO     | sum of square deviations: 935581045278.151
[2026-01-11 16:20:02] 2026-01-11 15:18:52,597 | INFO     | sum of deviations: 3173602649390.7617
[2026-01-11 16:20:02] 2026-01-11 15:18:52,597 | INFO     | mean x: 1768100557.9757786
[2026-01-11 16:20:02] 2026-01-11 15:18:52,598 | INFO     | mean y: 2801776.507266436
[2026-01-11 16:20:02] 2026-01-11 15:18:52,598 | INFO     | intersect: -5994806494.311191
[2026-01-11 16:20:02] 2026-01-11 15:18:52,599 | INFO     | chi2: 30.302603787543045
[2026-01-11 16:20:02] 2026-01-11 15:18:52,600 | INFO     | current chi2=30.302603787543045 (change=14.285563540813872 %)
[2026-01-11 16:20:02] 2026-01-11 15:18:52,600 | INFO     | left removable region: 10
[2026-01-11 16:20:02] 2026-01-11 15:18:52,601 | INFO     | sum of square deviations: 914377133710.0986
[2026-01-11 16:20:02] 2026-01-11 15:18:52,668 | INFO     | sum of deviations: 3173078406096.299
[2026-01-11 16:20:02] 2026-01-11 15:18:52,669 | INFO     | mean x: 1768100527.4832635
[2026-01-11 16:20:02] 2026-01-11 15:18:52,669 | INFO     | mean y: 2819676.3458856344
[2026-01-11 16:20:02] 2026-01-11 15:18:52,669 | INFO     | intersect: -6132856071.363003
[2026-01-11 16:20:02] 2026-01-11 15:18:52,670 | INFO     | chi2: 22.143208178420565
[2026-01-11 16:20:02] 2026-01-11 15:18:52,671 | INFO     | current memory leak: 3.47 B/s (using 1434 data points, chi2=22.14)
[2026-01-11 16:20:02] 2026-01-11 15:18:52,672 | INFO     | could have reported an average CPU frequency of 2249 MHz (49 samples)
[2026-01-11 16:20:02] 2026-01-11 15:18:52,672 | INFO     | ..............................
[2026-01-11 16:20:02] 2026-01-11 15:18:52,673 | INFO     | . Timing measurements:
[2026-01-11 16:20:02] 2026-01-11 15:18:52,673 | INFO     | . get job = 0 s
[2026-01-11 16:20:02] 2026-01-11 15:18:52,673 | INFO     | . initial setup = 9 s
[2026-01-11 16:20:02] 2026-01-11 15:18:52,673 | INFO     | . payload setup = 185 s
[2026-01-11 16:20:02] 2026-01-11 15:18:52,673 | INFO     | . stage-in = 0 s
[2026-01-11 16:20:02] 2026-01-11 15:18:52,673 | INFO     | . payload execution = 88560 s
[2026-01-11 16:20:02] 2026-01-11 15:18:52,673 | INFO     | . stage-out = 5 s
[2026-01-11 16:20:02] 2026-01-11 15:18:52,673 | INFO     | . log creation = 2 s
[2026-01-11 16:20:02] 2026-01-11 15:18:52,673 | INFO     | ..............................
[2026-01-11 16:20:02] 2026-01-11 15:18:52,793 | INFO     | time since job start (89076s) is within the limit (349056.0s)
[2026-01-11 16:20:02] 2026-01-11 15:18:53,280 | INFO     | 
[2026-01-11 16:20:02] 2026-01-11 15:18:53,281 | INFO     | job summary report
[2026-01-11 16:20:02] 2026-01-11 15:18:53,281 | INFO     | --------------------------------------------------
[2026-01-11 16:20:02] 2026-01-11 15:18:53,281 | INFO     | PanDA job id: 6963379703
[2026-01-11 16:20:02] 2026-01-11 15:18:53,281 | INFO     | task id: 47962010
[2026-01-11 16:20:02] 2026-01-11 15:18:53,281 | INFO     | errors: (none)
[2026-01-11 16:20:02] 2026-01-11 15:18:53,281 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 16:20:02] 2026-01-11 15:18:53,281 | INFO     | pilot state: finished 
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | transexitcode: 0
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | exeerrorcode: 0
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | exeerrordiag: 
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | exitcode: 0
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | exitmsg: OK
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | cpuconsumptiontime: 327134 s
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | nevents: 900
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | neventsw: 0
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | pid: 23962
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | pgrp: 23962
[2026-01-11 16:20:02] 2026-01-11 15:18:53,282 | INFO     | corecount: 8
[2026-01-11 16:20:02] 2026-01-11 15:18:53,283 | INFO     | event service: False
[2026-01-11 16:20:02] 2026-01-11 15:18:53,283 | INFO     | sizes: {0: 2284451, 1: 2284650, 12: 2284650, 23: 2284678, 33: 2284706, 44: 2284762, 55: 2284918, 66: 2284946, 76: 2284974, 87: 2285030, 97: 2285320, 98: 2285628, 8
[2026-01-11 16:20:02] 2026-01-11 15:18:53,283 | INFO     | --------------------------------------------------
[2026-01-11 16:20:02] 2026-01-11 15:18:53,283 | INFO     | 
[2026-01-11 16:20:02] 2026-01-11 15:18:53,283 | INFO     | executing command: ls -lF /var/lib/boinc/slots/4
[2026-01-11 16:20:02] 2026-01-11 15:18:53,865 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,865 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,865 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,865 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,866 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,866 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,866 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,866 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,866 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,866 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,866 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,866 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,866 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,867 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,867 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,867 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,867 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,867 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 16:20:02] 2026-01-11 15:18:53,867 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,867 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 16:20:02] 2026-01-11 15:18:53,867 | INFO     | job 6963379703 has completed (purged errors)
[2026-01-11 16:20:02] 2026-01-11 15:18:53,867 | INFO     | overall cleanup function is called
[2026-01-11 16:20:02] 2026-01-11 15:18:54,889 | INFO     | --- collectZombieJob: --- 10, [23962]
[2026-01-11 16:20:02] 2026-01-11 15:18:54,890 | INFO     | zombie collector waiting for pid 23962
[2026-01-11 16:20:02] 2026-01-11 15:18:54,890 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 16:20:02] 2026-01-11 15:18:54,890 | INFO     | collected zombie processes
[2026-01-11 16:20:02] 2026-01-11 15:18:54,890 | INFO     | will attempt to kill all subprocesses of pid=23962
[2026-01-11 16:20:02] 2026-01-11 15:18:54,961 | INFO     | process IDs to be killed: [23962] (in reverse order)
[2026-01-11 16:20:02] 2026-01-11 15:18:55,791 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 16:20:02] 2026-01-11 15:18:55,791 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 16:20:02] 2026-01-11 15:18:55,793 | INFO     | did not find any defunct processes belonging to 23962
[2026-01-11 16:20:02] 2026-01-11 15:18:55,803 | INFO     | did not find any defunct processes belonging to 23962
[2026-01-11 16:20:02] 2026-01-11 15:18:55,804 | INFO     | ready for new job
[2026-01-11 16:20:02] 2026-01-11 15:18:55,804 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 16:20:02] 2026-01-11 15:18:55,817 | INFO     | ***************************************
[2026-01-11 16:20:02] 2026-01-11 15:18:55,818 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 16:20:02] 2026-01-11 15:18:55,818 | INFO     | ***************************************
[2026-01-11 16:20:02] 2026-01-11 15:18:55,818 | INFO     | 
[2026-01-11 16:20:02] 2026-01-11 15:18:55,819 | INFO     | pilot is running in a VM
[2026-01-11 16:20:02] 2026-01-11 15:18:55,819 | INFO     | architecture information:
[2026-01-11 16:20:02] 2026-01-11 15:18:55,819 | INFO     | executing command: cat /etc/os-release
[2026-01-11 16:20:02] 2026-01-11 15:18:56,080 | INFO     | cat /etc/os-release:
[2026-01-11 16:20:02] NAME="CentOS Linux"
[2026-01-11 16:20:02] VERSION="7 (Core)"
[2026-01-11 16:20:02] ID="centos"
[2026-01-11 16:20:02] ID_LIKE="rhel fedora"
[2026-01-11 16:20:02] VERSION_ID="7"
[2026-01-11 16:20:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 16:20:02] ANSI_COLOR="0;31"
[2026-01-11 16:20:02] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 16:20:02] HOME_URL="https://www.centos.org/"
[2026-01-11 16:20:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 16:20:02] 
[2026-01-11 16:20:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 16:20:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 16:20:02] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 16:20:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 16:20:02] 
[2026-01-11 16:20:02] 2026-01-11 15:18:56,081 | INFO     | ***************************************
[2026-01-11 16:20:02] 2026-01-11 15:18:56,584 | INFO     | executing command: df -mP /var/lib/boinc/slots/4
[2026-01-11 16:20:02] 2026-01-11 15:18:56,955 | INFO     | sufficient remaining disk space (496519610368 B)
[2026-01-11 16:20:02] 2026-01-11 15:18:56,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 16:20:02] 2026-01-11 15:18:56,955 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 16:20:02] 2026-01-11 15:18:56,955 | INFO     | update_server=False
[2026-01-11 16:20:02] 2026-01-11 15:18:56,955 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 16:20:02] 2026-01-11 15:18:56,958 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 16:20:02] 2026-01-11 15:18:57,121 | INFO     | all data control threads have been joined
[2026-01-11 16:20:02] 2026-01-11 15:18:57,183 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 16:20:02] 2026-01-11 15:18:57,184 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 16:20:02] 2026-01-11 15:18:57,184 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 16:20:02] 2026-01-11 15:18:57,184 | INFO     | will abort loop
[2026-01-11 16:20:02] 2026-01-11 15:18:57,342 | INFO     | all payload control threads have been joined
[2026-01-11 16:20:02] 2026-01-11 15:18:57,815 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 16:20:02] 2026-01-11 15:18:57,962 | INFO     | [job] retrieve thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:58,128 | INFO     | [data] control thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:58,190 | INFO     | [job] job monitor thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:58,310 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:58,313 | INFO     | [job] validate thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:58,349 | INFO     | [payload] control thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:58,364 | INFO     | all job control threads have been joined
[2026-01-11 16:20:02] 2026-01-11 15:18:58,447 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:58,526 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:58,694 | INFO     | [data] copytool_in thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:58,822 | INFO     | [job] queue monitor thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:58,965 | INFO     | [data] copytool_out thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:59,110 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 16:20:02] 2026-01-11 15:18:59,158 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:59,258 | INFO     | [payload] failed_post thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:59,371 | INFO     | [job] control thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:18:59,455 | INFO     | [payload] validate_post thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:19:03,120 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 16:20:02] 2026-01-11 15:19:25,911 | INFO     | PID=17474 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 16:20:02] 2026-01-11 15:19:25,911 | INFO     | .. there are 2 such processes running
[2026-01-11 16:20:02] 2026-01-11 15:19:25,912 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 16:20:02] 2026-01-11 15:19:25,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 16:20:02] 2026-01-11 15:19:25,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 16:20:02] 2026-01-11 15:19:51,508 | INFO     | [monitor] cgroup control has ended
[2026-01-11 16:20:02] 2026-01-11 15:19:52,360 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139728947894080)>', '<ExcThread(monitor, started 139728372365056)>']
[2026-01-11 16:20:02] 2026-01-11 15:19:53,072 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 16:20:02] 2026-01-11 15:19:53,073 | INFO     | [monitor] control thread has ended
[2026-01-11 16:20:02] 2026-01-11 15:19:57,385 | INFO     | all workflow threads have been joined
[2026-01-11 16:20:02] 2026-01-11 15:19:57,386 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 16:20:02] 2026-01-11 15:19:57,386 | INFO     | traces error code: 0
[2026-01-11 16:20:02] 2026-01-11 15:19:57,386 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 16:20:02] 2026-01-11 15:19:57,703 [wrapper] ==== pilot stdout END ====
[2026-01-11 16:20:02] 2026-01-11 15:19:57,819 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 16:20:02] 2026-01-11 15:19:57,930 [wrapper] pilotpid: 17474
[2026-01-11 16:20:02] 2026-01-11 15:19:58,007 [wrapper] Pilot exit status: 0
[2026-01-11 16:20:02] 2026-01-11 15:19:58,416 [wrapper] pandaids: 6963379703
[2026-01-11 16:20:02] 2026-01-11 15:19:59,211 [wrapper] cleanup supervisor_pilot 27262 17475
[2026-01-11 16:20:02] 2026-01-11 15:19:59,307 [wrapper] Test setup, not cleaning
[2026-01-11 16:20:02] 2026-01-11 15:19:59,405 [wrapper] apfmon messages muted
[2026-01-11 16:20:02] 2026-01-11 15:19:59,537 [wrapper] ==== wrapper stdout END ====
[2026-01-11 16:20:02] 2026-01-11 15:19:59,629 [wrapper] ==== wrapper stderr END ====
[2026-01-11 16:20:02]  *** Error codes and diagnostics ***
[2026-01-11 16:20:02]     "exeErrorCode": 0,
[2026-01-11 16:20:02]     "exeErrorDiag": "",
[2026-01-11 16:20:02]     "pilotErrorCode": 0,
[2026-01-11 16:20:02]     "pilotErrorDiag": "",
[2026-01-11 16:20:02]  *** Listing of results directory ***
[2026-01-11 16:20:02] total 1200984
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc    579449 Jan  9 08:13 pilot3.tar.gz
[2026-01-11 16:20:02] -rwx------. 1 boinc boinc     36322 Jan  9 08:15 runpilot2-wrapper.sh
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc      5112 Jan  9 08:16 queuedata.json
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc       100 Jan 10 15:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 16:20:02] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 15:29 run_atlas
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc       105 Jan 10 15:29 job.xml
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc      6390 Jan 10 15:29 init_data.xml
[2026-01-11 16:20:02] -rw-r--r--. 2 boinc boinc 391896450 Jan 10 15:29 EVNT.47962006._000020.pool.root.1
[2026-01-11 16:20:02] -rw-r--r--. 2 boinc boinc     15847 Jan 10 15:29 start_atlas.sh
[2026-01-11 16:20:02] drwxrwx--x. 2 boinc boinc        68 Jan 10 15:29 shared
[2026-01-11 16:20:02] -rw-r--r--. 2 boinc boinc    592608 Jan 10 15:29 input.tar.gz
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc         0 Jan 10 15:29 boinc_lockfile
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc      2892 Jan 10 15:29 pandaJob.out
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc    989556 Jan 10 15:34 agis_schedconf.cvmfs.json
[2026-01-11 16:20:02] drwx------. 5 boinc boinc      4096 Jan 10 15:34 pilot3
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc       533 Jan 11 15:47 boinc_task_state.xml
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc 805029415 Jan 11 16:15 HITS.47962010._001460.pool.root.1
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc      1028 Jan 11 16:16 memory_monitor_summary.json
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc   1516240 Jan 11 16:16 agis_ddmendpoints.agis.ALL.json
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc   2502478 Jan 11 16:16 log.47962010._001460.job.log.tgz.1
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc      8630 Jan 11 16:18 heartbeat.json
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc        95 Jan 11 16:19 pilot_heartbeat.json
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc        29 Jan 11 16:19 wrapper_checkpoint.txt
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc      8192 Jan 11 16:19 boinc_mmap_file
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc      5070 Jan 11 16:19 pilotlog.txt
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc  11986944 Jan 11 16:19 log.47962010._001460.job.log.1
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc       353 Jan 11 16:20 output.list
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc       620 Jan 11 16:20 runtime_log
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc  14510080 Jan 11 16:20 result.tar.gz
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc      8817 Jan 11 16:20 runtime_log.err
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc       662 Jan 11 16:20 o2HODmJtLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUWmKDmRQmSSm.diag
[2026-01-11 16:20:02] -rw-r--r--. 1 boinc boinc     21387 Jan 11 16:20 stderr.txt
[2026-01-11 16:20:02] HITS file was successfully produced:
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc 805029415 Jan 11 16:15 shared/HITS.pool.root.1
[2026-01-11 16:20:02]  *** Contents of shared directory: ***
[2026-01-11 16:20:02] total 1183644
[2026-01-11 16:20:02] -rw-r--r--. 2 boinc boinc 391896450 Jan 10 15:29 ATLAS.root_0
[2026-01-11 16:20:02] -rw-r--r--. 2 boinc boinc     15847 Jan 10 15:29 start_atlas.sh
[2026-01-11 16:20:02] -rw-r--r--. 2 boinc boinc    592608 Jan 10 15:29 input.tar.gz
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc 805029415 Jan 11 16:15 HITS.pool.root.1
[2026-01-11 16:20:02] -rw-------. 1 boinc boinc  14510080 Jan 11 16:20 result.tar.gz
16:20:04 (13742): run_atlas exited; CPU time 327572.769711
16:20:04 (13742): called boinc_finish(0)

</stderr_txt>
]]>

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