Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
14:02:45 (2642469): wrapper (7.7.26015): starting
14:02:45 (2642469): wrapper: running run_atlas (--nthreads 12)
[2026-01-09 14:02:45] Arguments: --nthreads 12
[2026-01-09 14:02:45] Threads: 12
[2026-01-09 14:02:45] Checking for CVMFS
[2026-01-09 14:02:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 14:02:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 14:02:46] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 14:02:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 14:02:46] 2.11.5.0 2587603 57125 220968 154957 1 574 22866642 45568001 10740 130560 0 366099989 99.779 236948331 19772 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2026-01-09 14:02:46] CVMFS is ok
[2026-01-09 14:02:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 14:02:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 14:02:46] Further information can be found at the LHC@home message board.
[2026-01-09 14:02:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 14:02:46] Checking for apptainer binary...
[2026-01-09 14:02:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 14:02:46] Running /usr/bin/apptainer --version
[2026-01-09 14:02:46] apptainer version 1.4.1-1.el9
[2026-01-09 14:02:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 14:02:46] wns0056.triumf.lcg
[2026-01-09 14:02:46] apptainer works
[2026-01-09 14:02:46] Set ATHENA_PROC_NUMBER=12
[2026-01-09 14:02:46] Set ATHENA_CORE_NUMBER=12
[2026-01-09 14:02:46] Starting ATLAS job with PandaID=6963375878
[2026-01-09 14:02:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 14:08:07]  *** The last 200 lines of the pilot log: ***
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:08:07] 2026-01-09 22:07:10,297 | WARNING  | wrong length of table data, x=[1767996236.0, 1767996297.0], y=[801.0, 239815.0] (must be same and length>=4)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,297 | INFO     | could have reported an average CPU frequency of 2710 MHz (4 samples)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,297 | INFO     | ..............................
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . Timing measurements:
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . get job = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . initial setup = 2 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . payload setup = 11 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . stage-in = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . payload execution = 77 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . stage-out = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . log creation = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | ..............................
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963375878/pilotlog.txt
[2026-01-09 14:08:07] 2026-01-09 22:07:10,310 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-01-09 14:08:07] - Log from pilotlog.txt -
[2026-01-09 14:08:07] 2026-01-09 22:07:10,295 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963375878/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | INFO     | extracted standard info from prmon json
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:08:07] 2026-01-09 22:07:10,297 | WARNING  | wrong length of table data, x=[1767996236.0, 1767996297.0], y=[801.0, 239815.0] (must be same and length>=4)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,297 | INFO     | could have reported an average CPU frequency of 2710 MHz (4 samples)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,297 | INFO     | ..............................
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . Timing measurements:
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . get job = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . initial setup = 2 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . payload setup = 11 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . stage-in = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . payload execution = 77 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . stage-out = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . log creation = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | ..............................
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963375878/pilotlog.txt
[2026-01-09 14:08:07] 2026-01-09 22:07:10,310 | WARNING  | 
[2026-01-09 14:08:07] [begin log extracts]
[2026-01-09 14:08:07] - Log from pilotlog.txt -
[2026-01-09 14:08:07] 2026-01-09 22:07:10,295 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6963375878/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | INFO     | extracted standard info from prmon json
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 14:08:07] 2026-01-09 22:07:10,296 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 14:08:07] 2026-01-09 22:07:10,297 | WARNING  | wrong length of table data, x=[1767996236.0, 1767996297.0], y=[801.0, 239815.0] (must be same and length>=4)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,297 | INFO     | could have reported an average CPU frequency of 2710 MHz (4 samples)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,297 | INFO     | ..............................
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . Timing measurements:
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . get job = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . initial setup = 2 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . payload setup = 11 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . stage-in = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . payload execution = 77 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . stage-out = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | . log creation = 0 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | ..............................
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-01-09 14:08:07] 2026-01-09 22:07:10,298 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6963375878/pilotlog.txt
[2026-01-09 14:08:07] [end log extracts]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,310 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,311 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2026-01-09 14:08:07] 2026-01-09 22:07:10,389 | INFO     | 
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | job summary report
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | --------------------------------------------------
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | PanDA job id: 6963375878
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | task id: 47962010
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-01-09 14:04:58,000 CRITICAL Transform executor raised TransformValidationExceptio
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | error 2/2: 1165: Local output file is missing
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | pilot state: failed 
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | transexitcode: 65
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | exeerrorcode: 65
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | exitcode: 65
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | cpuconsumptiontime: 40 s
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | nevents: 0
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | neventsw: 0
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | pid: 2652954
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | pgrp: 2652954
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | corecount: 12
[2026-01-09 14:08:07] 2026-01-09 22:07:10,390 | INFO     | event service: False
[2026-01-09 14:08:07] 2026-01-09 22:07:10,391 | INFO     | sizes: {0: 2284392, 1: 2284647, 12: 2284937, 22: 2284937, 92: 2310477, 93: 2310453, 94: 2314899, 96: 2314927, 217: 2315093}
[2026-01-09 14:08:07] 2026-01-09 22:07:10,391 | INFO     | --------------------------------------------------
[2026-01-09 14:08:07] 2026-01-09 22:07:10,391 | INFO     | 
[2026-01-09 14:08:07] 2026-01-09 22:07:10,391 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,405 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | job 6963375878 has completed (purged errors)
[2026-01-09 14:08:07] 2026-01-09 22:07:10,406 | INFO     | overall cleanup function is called
[2026-01-09 14:08:07] 2026-01-09 22:07:11,413 | INFO     | --- collectZombieJob: --- 10, [2652954]
[2026-01-09 14:08:07] 2026-01-09 22:07:11,414 | INFO     | zombie collector waiting for pid 2652954
[2026-01-09 14:08:07] 2026-01-09 22:07:11,414 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 14:08:07] 2026-01-09 22:07:11,414 | INFO     | collected zombie processes
[2026-01-09 14:08:07] 2026-01-09 22:07:11,414 | INFO     | will attempt to kill all subprocesses of pid=2652954
[2026-01-09 14:08:07] 2026-01-09 22:07:11,554 | INFO     | process IDs to be killed: [2652954] (in reverse order)
[2026-01-09 14:08:07] 2026-01-09 22:07:11,643 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 14:08:07] 2026-01-09 22:07:11,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 14:08:07] 2026-01-09 22:07:11,655 | INFO     | did not find any defunct processes belonging to 2652954
[2026-01-09 14:08:07] 2026-01-09 22:07:11,676 | INFO     | did not find any defunct processes belonging to 2652954
[2026-01-09 14:08:07] 2026-01-09 22:07:11,676 | INFO     | ready for new job
[2026-01-09 14:08:07] 2026-01-09 22:07:11,676 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 14:08:07] 2026-01-09 22:07:11,698 | INFO     | ***************************************
[2026-01-09 14:08:07] 2026-01-09 22:07:11,698 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 14:08:07] 2026-01-09 22:07:11,698 | INFO     | ***************************************
[2026-01-09 14:08:07] 2026-01-09 22:07:11,698 | INFO     | 
[2026-01-09 14:08:07] 2026-01-09 22:07:11,700 | INFO     | architecture information:
[2026-01-09 14:08:07] 2026-01-09 22:07:11,720 | INFO     | executing command: cat /etc/os-release
[2026-01-09 14:08:07] 2026-01-09 22:07:11,813 | INFO     | cat /etc/os-release:
[2026-01-09 14:08:07] NAME="CentOS Linux"
[2026-01-09 14:08:07] VERSION="7 (Core)"
[2026-01-09 14:08:07] ID="centos"
[2026-01-09 14:08:07] ID_LIKE="rhel fedora"
[2026-01-09 14:08:07] VERSION_ID="7"
[2026-01-09 14:08:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 14:08:07] ANSI_COLOR="0;31"
[2026-01-09 14:08:07] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 14:08:07] HOME_URL="https://www.centos.org/"
[2026-01-09 14:08:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 14:08:07] 
[2026-01-09 14:08:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 14:08:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 14:08:07] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 14:08:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 14:08:07] 
[2026-01-09 14:08:07] 2026-01-09 22:07:11,814 | INFO     | ***************************************
[2026-01-09 14:08:07] 2026-01-09 22:07:12,318 | INFO     | executing command: df -mP /home/boinc/slots/0
[2026-01-09 14:08:07] 2026-01-09 22:07:12,434 | INFO     | sufficient remaining disk space (1898413293568 B)
[2026-01-09 14:08:07] 2026-01-09 22:07:12,434 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 14:08:07] 2026-01-09 22:07:12,434 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 14:08:07] 2026-01-09 22:07:12,434 | INFO     | update_server=False
[2026-01-09 14:08:07] 2026-01-09 22:07:12,434 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 14:08:07] 2026-01-09 22:07:12,435 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:08:07] 2026-01-09 22:07:12,435 | INFO     | aborting loop
[2026-01-09 14:08:07] 2026-01-09 22:07:12,435 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 14:08:07] 2026-01-09 22:07:12,739 | INFO     | all data control threads have been joined
[2026-01-09 14:08:07] 2026-01-09 22:07:12,898 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 14:08:07] 2026-01-09 22:07:13,450 | INFO     | [job] retrieve thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:13,450 | INFO     | [job] job monitor thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:13,493 | INFO     | all job control threads have been joined
[2026-01-09 14:08:07] 2026-01-09 22:07:13,745 | INFO     | [data] control thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:13,763 | INFO     | [payload] failed_post thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:13,927 | INFO     | [data] copytool_in thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:13,946 | INFO     | all payload control threads have been joined
[2026-01-09 14:08:07] 2026-01-09 22:07:14,250 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:14,376 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:14,428 | INFO     | [job] validate thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:14,499 | INFO     | [job] control thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:14,501 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:14,727 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:14,776 | INFO     | [payload] validate_post thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:14,911 | INFO     | [data] copytool_out thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:14,952 | INFO     | [payload] control thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:15,383 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 14:08:07] 2026-01-09 22:07:16,389 | INFO     | [job] queue monitor thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:16,446 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 14:08:07] 2026-01-09 22:07:42,634 | INFO     | PID=2646136 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 14:08:07] 2026-01-09 22:07:42,634 | INFO     | .. there are 13 such processes running
[2026-01-09 14:08:07] 2026-01-09 22:07:42,635 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 14:08:07] 2026-01-09 22:07:42,635 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 14:08:07] 2026-01-09 22:07:42,635 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 14:08:07] 2026-01-09 22:08:00,369 | INFO     | [monitor] cgroup control has ended
[2026-01-09 14:08:07] 2026-01-09 22:08:02,216 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140074030057280)>', '<ExcThread(monitor, started 140073504859904)>']
[2026-01-09 14:08:07] 2026-01-09 22:08:02,756 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 14:08:07] 2026-01-09 22:08:02,756 | INFO     | [monitor] control thread has ended
[2026-01-09 14:08:07] 2026-01-09 22:08:07,242 | INFO     | all workflow threads have been joined
[2026-01-09 14:08:07] 2026-01-09 22:08:07,243 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 14:08:07] 2026-01-09 22:08:07,243 | INFO     | traces error code: 0
[2026-01-09 14:08:07] 2026-01-09 22:08:07,243 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 14:08:07] 2026-01-09 22:08:07,350 [wrapper] ==== pilot stdout END ====
[2026-01-09 14:08:07] 2026-01-09 22:08:07,352 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 14:08:07] 2026-01-09 22:08:07,354 [wrapper] pilotpid: 2646136
[2026-01-09 14:08:07] 2026-01-09 22:08:07,355 [wrapper] Pilot exit status: 0
[2026-01-09 14:08:07] 2026-01-09 22:08:07,378 [wrapper] pandaids: 6963375878
[2026-01-09 14:08:07] 2026-01-09 22:08:07,413 [wrapper] cleanup supervisor_pilot 2646142 2646137
[2026-01-09 14:08:07] 2026-01-09 22:08:07,415 [wrapper] Test setup, not cleaning
[2026-01-09 14:08:07] 2026-01-09 22:08:07,417 [wrapper] apfmon messages muted
[2026-01-09 14:08:07] 2026-01-09 22:08:07,419 [wrapper] ==== wrapper stdout END ====
[2026-01-09 14:08:07] 2026-01-09 22:08:07,421 [wrapper] ==== wrapper stderr END ====
[2026-01-09 14:08:07]  *** Error codes and diagnostics ***
[2026-01-09 14:08:07]     "exeErrorCode": 65,
[2026-01-09 14:08:07]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2026-01-09 14:08:07]     "pilotErrorCode": 1305,
[2026-01-09 14:08:07]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2026-01-09 14:08:07]  *** Listing of results directory ***
[2026-01-09 14:08:07] total 387680
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc    579449 Jan  8 23:13 pilot3.tar.gz
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc      5112 Jan  8 23:13 queuedata.json
[2026-01-09 14:08:07] -rwx------. 1 boinc boinc     36322 Jan  8 23:14 runpilot2-wrapper.sh
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc       100 Jan  9 14:02 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 14:08:07] -rwxr-xr-x. 1 boinc boinc      7986 Jan  9 14:02 run_atlas
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc       105 Jan  9 14:02 job.xml
[2026-01-09 14:08:07] -rw-r--r--. 2 boinc boinc 392783492 Jan  9 14:02 EVNT.47962006._000082.pool.root.1
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc      6594 Jan  9 14:02 init_data.xml
[2026-01-09 14:08:07] -rw-r--r--. 2 boinc boinc     15847 Jan  9 14:02 start_atlas.sh
[2026-01-09 14:08:07] drwxrwx--x. 2 boinc boinc      4096 Jan  9 14:02 shared
[2026-01-09 14:08:07] -rw-r--r--. 2 boinc boinc    592607 Jan  9 14:02 input.tar.gz
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc         0 Jan  9 14:02 boinc_lockfile
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc      2892 Jan  9 14:02 pandaJob.out
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc    989398 Jan  9 14:02 agis_schedconf.cvmfs.json
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc   1516240 Jan  9 14:02 agis_ddmendpoints.agis.ALL.json
[2026-01-09 14:08:07] drwx------. 5 boinc boinc      4096 Jan  9 14:03 pilot3
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc       524 Jan  9 14:05 boinc_task_state.xml
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc       988 Jan  9 14:05 memory_monitor_summary.json
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc     48078 Jan  9 14:05 log.47962010._001039.job.log.tgz.1
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc        95 Jan  9 14:07 pilot_heartbeat.json
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc     10327 Jan  9 14:07 heartbeat.json
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc        23 Jan  9 14:08 wrapper_checkpoint.txt
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc      8192 Jan  9 14:08 boinc_mmap_file
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc      4823 Jan  9 14:08 pilotlog.txt
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc     95920 Jan  9 14:08 log.47962010._001039.job.log.1
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc       186 Jan  9 14:08 output.list
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc       620 Jan  9 14:08 runtime_log
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc    163840 Jan  9 14:08 result.tar.gz
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc      8636 Jan  9 14:08 runtime_log.err
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc       644 Jan  9 14:08 b80KDmGsLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiGhKDmf7y3Ym.diag
[2026-01-09 14:08:07] -rw-r--r--. 1 boinc boinc     22370 Jan  9 14:08 stderr.txt
[2026-01-09 14:08:07] No HITS result produced
[2026-01-09 14:08:07]  *** Contents of shared directory: ***
[2026-01-09 14:08:07] total 384340
[2026-01-09 14:08:07] -rw-r--r--. 2 boinc boinc 392783492 Jan  9 14:02 ATLAS.root_0
[2026-01-09 14:08:07] -rw-r--r--. 2 boinc boinc     15847 Jan  9 14:02 start_atlas.sh
[2026-01-09 14:08:07] -rw-r--r--. 2 boinc boinc    592607 Jan  9 14:02 input.tar.gz
[2026-01-09 14:08:07] -rw-------. 1 boinc boinc    163840 Jan  9 14:08 result.tar.gz
14:08:08 (2642469): run_atlas exited; CPU time 42.273749
14:08:08 (2642469): called boinc_finish(0)

</stderr_txt>
]]>

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