Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
21:18:31 (145594): wrapper (7.7.26015): starting
21:18:31 (145594): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 21:18:31] Arguments: --nthreads 9
[2026-01-09 21:18:31] Threads: 9
[2026-01-09 21:18:31] Checking for CVMFS
[2026-01-09 21:18:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 21:18:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 21:18:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 21:18:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 21:18:32] 2.13.3.0 9728 22107 162996 154964 1 64 36808159 39288832 7313 16776704 0 10503916 99.549 11380575 36068 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 21:18:32] CVMFS is ok
[2026-01-09 21:18:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 21:18:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 21:18:32] Further information can be found at the LHC@home message board.
[2026-01-09 21:18:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 21:18:32] Checking for apptainer binary...
[2026-01-09 21:18:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 21:18:32] Running /usr/bin/apptainer --version
[2026-01-09 21:18:32] apptainer version 1.4.5-2.el9
[2026-01-09 21:18:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 21:18:32] c-211-5.aglt2.org
[2026-01-09 21:18:32] apptainer works
[2026-01-09 21:18:32] Set ATHENA_PROC_NUMBER=9
[2026-01-09 21:18:32] Set ATHENA_CORE_NUMBER=9
[2026-01-09 21:18:32] Starting ATLAS job with PandaID=6963378508
[2026-01-09 21:18:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 14:50:34]  *** The last 200 lines of the pilot log: ***
[2026-01-11 14:50:34] 2026-01-11 19:49:51,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 14:50:34] 2026-01-11 19:49:51,889 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 14:50:34] 2026-01-11 19:49:51,896 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.8665500000006
[2026-01-11 14:50:34] 2026-01-11 19:49:51,902 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963378508/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 14:50:34] 2026-01-11 19:49:51,903 | INFO     | extracted standard info from prmon json
[2026-01-11 14:50:34] 2026-01-11 19:49:51,903 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 14:50:34] 2026-01-11 19:49:51,903 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 14:50:34] 2026-01-11 19:49:51,946 | INFO     | fitting pss+swap vs Time
[2026-01-11 14:50:34] 2026-01-11 19:49:51,949 | INFO     | sum of square deviations: 4560106202649.529
[2026-01-11 14:50:34] 2026-01-11 19:49:52,110 | INFO     | sum of deviations: 12023726307666.658
[2026-01-11 14:50:34] 2026-01-11 19:49:52,111 | INFO     | mean x: 1768086265.2208164
[2026-01-11 14:50:34] 2026-01-11 19:49:52,111 | INFO     | mean y: 3148526.876734694
[2026-01-11 14:50:34] 2026-01-11 19:49:52,111 | INFO     | intersect: -4658801084.956351
[2026-01-11 14:50:34] 2026-01-11 19:49:52,114 | INFO     | chi2: 9.631360024393773
[2026-01-11 14:50:34] 2026-01-11 19:49:52,117 | INFO     | sum of square deviations: 4532249037030.732
[2026-01-11 14:50:34] 2026-01-11 19:49:52,197 | INFO     | time since job start (149464s) is within the limit (349056.0s)
[2026-01-11 14:50:34] 2026-01-11 19:49:52,254 | INFO     | sum of deviations: 12934032048862.559
[2026-01-11 14:50:34] 2026-01-11 19:49:52,254 | INFO     | mean x: 1768086112.7345603
[2026-01-11 14:50:34] 2026-01-11 19:49:52,255 | INFO     | mean y: 3153509.5770961144
[2026-01-11 14:50:34] 2026-01-11 19:49:52,255 | INFO     | intersect: -5042571529.009868
[2026-01-11 14:50:34] 2026-01-11 19:49:52,258 | INFO     | chi2: 6.434052148036595
[2026-01-11 14:50:34] 2026-01-11 19:49:52,258 | INFO     | current chi2=6.434052148036595 (change=33.1968472599842 %)
[2026-01-11 14:50:34] 2026-01-11 19:49:52,261 | INFO     | sum of square deviations: 4504505445584.986
[2026-01-11 14:50:34] 2026-01-11 19:49:52,397 | INFO     | sum of deviations: 13523744085224.994
[2026-01-11 14:50:34] 2026-01-11 19:49:52,397 | INFO     | mean x: 1768085960.2479508
[2026-01-11 14:50:34] 2026-01-11 19:49:52,398 | INFO     | mean y: 3156749.8
[2026-01-11 14:50:34] 2026-01-11 19:49:52,398 | INFO     | intersect: -5305115675.6465435
[2026-01-11 14:50:34] 2026-01-11 19:49:52,401 | INFO     | chi2: 4.856429285883442
[2026-01-11 14:50:34] 2026-01-11 19:49:52,401 | INFO     | current chi2=4.856429285883442 (change=24.519895485065007 %)
[2026-01-11 14:50:34] 2026-01-11 19:49:52,401 | INFO     | right removable region: 2439
[2026-01-11 14:50:34] 2026-01-11 19:49:52,404 | INFO     | sum of square deviations: 4532238992770.727
[2026-01-11 14:50:34] 2026-01-11 19:49:52,540 | INFO     | sum of deviations: 11189647377319.027
[2026-01-11 14:50:34] 2026-01-11 19:49:52,541 | INFO     | mean x: 1768086417.7345603
[2026-01-11 14:50:34] 2026-01-11 19:49:52,541 | INFO     | mean y: 3153090.4838445806
[2026-01-11 14:50:34] 2026-01-11 19:49:52,541 | INFO     | intersect: -4362076452.493556
[2026-01-11 14:50:34] 2026-01-11 19:49:52,544 | INFO     | chi2: 7.110427462653135
[2026-01-11 14:50:34] 2026-01-11 19:49:52,544 | INFO     | current chi2=7.110427462653135 (change=26.174211693423988 %)
[2026-01-11 14:50:34] 2026-01-11 19:49:52,547 | INFO     | sum of square deviations: 4504487444360.872
[2026-01-11 14:50:34] 2026-01-11 19:49:52,684 | INFO     | sum of deviations: 10969450888957.354
[2026-01-11 14:50:34] 2026-01-11 19:49:52,684 | INFO     | mean x: 1768086570.2430327
[2026-01-11 14:50:34] 2026-01-11 19:49:52,684 | INFO     | mean y: 3154300.4918032787
[2026-01-11 14:50:34] 2026-01-11 19:49:52,685 | INFO     | intersect: -4302538420.216375
[2026-01-11 14:50:34] 2026-01-11 19:49:52,688 | INFO     | chi2: 7.022497310202745
[2026-01-11 14:50:34] 2026-01-11 19:49:52,688 | INFO     | current chi2=7.022497310202745 (change=1.2366366566881553 %)
[2026-01-11 14:50:34] 2026-01-11 19:49:52,688 | INFO     | left removable region: 20
[2026-01-11 14:50:34] 2026-01-11 19:49:52,691 | INFO     | sum of square deviations: 4389200144461.164
[2026-01-11 14:50:34] 2026-01-11 19:49:52,958 | INFO     | sum of deviations: 12200948019621.31
[2026-01-11 14:50:34] 2026-01-11 19:49:52,958 | INFO     | mean x: 1768086539.7470028
[2026-01-11 14:50:34] 2026-01-11 19:49:52,959 | INFO     | mean y: 3164885.69656883
[2026-01-11 14:50:34] 2026-01-11 19:49:52,959 | INFO     | intersect: -4911701435.190604
[2026-01-11 14:50:34] 2026-01-11 19:49:52,962 | INFO     | chi2: 2.036581276683965
[2026-01-11 14:50:34] 2026-01-11 19:49:52,962 | INFO     | current memory leak: 2.78 B/s (using 2419 data points, chi2=2.04)
[2026-01-11 14:50:34] 2026-01-11 19:49:52,964 | INFO     | could have reported an average CPU frequency of 2599 MHz (84 samples)
[2026-01-11 14:50:34] 2026-01-11 19:49:52,964 | INFO     | ..............................
[2026-01-11 14:50:34] 2026-01-11 19:49:52,965 | INFO     | . Timing measurements:
[2026-01-11 14:50:34] 2026-01-11 19:49:52,965 | INFO     | . get job = 0 s
[2026-01-11 14:50:34] 2026-01-11 19:49:52,965 | INFO     | . initial setup = 3 s
[2026-01-11 14:50:34] 2026-01-11 19:49:52,965 | INFO     | . payload setup = 10 s
[2026-01-11 14:50:34] 2026-01-11 19:49:52,965 | INFO     | . stage-in = 0 s
[2026-01-11 14:50:34] 2026-01-11 19:49:52,965 | INFO     | . payload execution = 149405 s
[2026-01-11 14:50:34] 2026-01-11 19:49:52,965 | INFO     | . stage-out = 6 s
[2026-01-11 14:50:34] 2026-01-11 19:49:52,965 | INFO     | . log creation = 1 s
[2026-01-11 14:50:34] 2026-01-11 19:49:52,965 | INFO     | ..............................
[2026-01-11 14:50:34] 2026-01-11 19:49:53,077 | INFO     | 
[2026-01-11 14:50:34] 2026-01-11 19:49:53,078 | INFO     | job summary report
[2026-01-11 14:50:34] 2026-01-11 19:49:53,078 | INFO     | --------------------------------------------------
[2026-01-11 14:50:34] 2026-01-11 19:49:53,078 | INFO     | PanDA job id: 6963378508
[2026-01-11 14:50:34] 2026-01-11 19:49:53,078 | INFO     | task id: 47962010
[2026-01-11 14:50:34] 2026-01-11 19:49:53,078 | INFO     | errors: (none)
[2026-01-11 14:50:34] 2026-01-11 19:49:53,078 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 14:50:34] 2026-01-11 19:49:53,078 | INFO     | pilot state: finished 
[2026-01-11 14:50:34] 2026-01-11 19:49:53,079 | INFO     | transexitcode: 0
[2026-01-11 14:50:34] 2026-01-11 19:49:53,079 | INFO     | exeerrorcode: 0
[2026-01-11 14:50:34] 2026-01-11 19:49:53,079 | INFO     | exeerrordiag: 
[2026-01-11 14:50:34] 2026-01-11 19:49:53,079 | INFO     | exitcode: 0
[2026-01-11 14:50:34] 2026-01-11 19:49:53,079 | INFO     | exitmsg: OK
[2026-01-11 14:50:34] 2026-01-11 19:49:53,079 | INFO     | cpuconsumptiontime: 310228 s
[2026-01-11 14:50:34] 2026-01-11 19:49:53,079 | INFO     | nevents: 900
[2026-01-11 14:50:34] 2026-01-11 19:49:53,079 | INFO     | neventsw: 0
[2026-01-11 14:50:34] 2026-01-11 19:49:53,079 | INFO     | pid: 156859
[2026-01-11 14:50:34] 2026-01-11 19:49:53,079 | INFO     | pgrp: 156859
[2026-01-11 14:50:34] 2026-01-11 19:49:53,080 | INFO     | corecount: 9
[2026-01-11 14:50:34] 2026-01-11 19:49:53,080 | INFO     | event service: False
[2026-01-11 14:50:34] 2026-01-11 19:49:53,080 | INFO     | sizes: {0: 2283794, 1: 2284650, 6: 2284912, 12: 2284940, 149419: 2379084, 149420: 2379083, 149426: 2388261, 149428: 2388317, 149446: 2388563}
[2026-01-11 14:50:34] 2026-01-11 19:49:53,080 | INFO     | --------------------------------------------------
[2026-01-11 14:50:34] 2026-01-11 19:49:53,080 | INFO     | 
[2026-01-11 14:50:34] 2026-01-11 19:49:53,080 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-11 14:50:34] 2026-01-11 19:49:53,105 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,106 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,106 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,106 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,106 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,106 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,106 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,106 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,106 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,106 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,106 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,107 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,107 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,107 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,107 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,107 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,107 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,107 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 14:50:34] 2026-01-11 19:49:53,107 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,107 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 14:50:34] 2026-01-11 19:49:53,108 | INFO     | job 6963378508 has completed (purged errors)
[2026-01-11 14:50:34] 2026-01-11 19:49:53,108 | INFO     | overall cleanup function is called
[2026-01-11 14:50:34] 2026-01-11 19:49:54,126 | INFO     | --- collectZombieJob: --- 10, [156859]
[2026-01-11 14:50:34] 2026-01-11 19:49:54,127 | INFO     | zombie collector waiting for pid 156859
[2026-01-11 14:50:34] 2026-01-11 19:49:54,127 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 14:50:34] 2026-01-11 19:49:54,127 | INFO     | collected zombie processes
[2026-01-11 14:50:34] 2026-01-11 19:49:54,127 | INFO     | will attempt to kill all subprocesses of pid=156859
[2026-01-11 14:50:34] 2026-01-11 19:49:54,841 | INFO     | process IDs to be killed: [156859] (in reverse order)
[2026-01-11 14:50:34] 2026-01-11 19:49:55,234 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 14:50:34] 2026-01-11 19:49:55,234 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 14:50:34] 2026-01-11 19:49:55,245 | INFO     | did not find any defunct processes belonging to 156859
[2026-01-11 14:50:34] 2026-01-11 19:49:55,266 | INFO     | did not find any defunct processes belonging to 156859
[2026-01-11 14:50:34] 2026-01-11 19:49:55,267 | INFO     | ready for new job
[2026-01-11 14:50:34] 2026-01-11 19:49:55,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 14:50:34] 2026-01-11 19:49:55,294 | INFO     | ***************************************
[2026-01-11 14:50:34] 2026-01-11 19:49:55,294 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 14:50:34] 2026-01-11 19:49:55,294 | INFO     | ***************************************
[2026-01-11 14:50:34] 2026-01-11 19:49:55,295 | INFO     | 
[2026-01-11 14:50:34] 2026-01-11 19:49:55,296 | INFO     | architecture information:
[2026-01-11 14:50:34] 2026-01-11 19:49:55,297 | INFO     | executing command: cat /etc/os-release
[2026-01-11 14:50:34] 2026-01-11 19:49:55,313 | INFO     | cat /etc/os-release:
[2026-01-11 14:50:34] NAME="CentOS Linux"
[2026-01-11 14:50:34] VERSION="7 (Core)"
[2026-01-11 14:50:34] ID="centos"
[2026-01-11 14:50:34] ID_LIKE="rhel fedora"
[2026-01-11 14:50:34] VERSION_ID="7"
[2026-01-11 14:50:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 14:50:34] ANSI_COLOR="0;31"
[2026-01-11 14:50:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 14:50:34] HOME_URL="https://www.centos.org/"
[2026-01-11 14:50:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 14:50:34] 
[2026-01-11 14:50:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 14:50:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 14:50:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 14:50:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 14:50:34] 
[2026-01-11 14:50:34] 2026-01-11 19:49:55,314 | INFO     | ***************************************
[2026-01-11 14:50:34] 2026-01-11 19:49:55,818 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-11 14:50:34] 2026-01-11 19:49:55,993 | INFO     | sufficient remaining disk space (52856619008 B)
[2026-01-11 14:50:34] 2026-01-11 19:49:55,993 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 14:50:34] 2026-01-11 19:49:55,993 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 14:50:34] 2026-01-11 19:49:55,993 | INFO     | update_server=False
[2026-01-11 14:50:34] 2026-01-11 19:49:55,994 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 14:50:34] 2026-01-11 19:49:55,994 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 14:50:34] 2026-01-11 19:49:56,426 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 14:50:34] 2026-01-11 19:49:56,427 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 14:50:34] 2026-01-11 19:49:56,427 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 14:50:34] 2026-01-11 19:49:56,427 | INFO     | will abort loop
[2026-01-11 14:50:34] 2026-01-11 19:49:56,672 | INFO     | all data control threads have been joined
[2026-01-11 14:50:34] 2026-01-11 19:49:56,821 | INFO     | all job control threads have been joined
[2026-01-11 14:50:34] 2026-01-11 19:49:56,999 | INFO     | [job] retrieve thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:57,071 | INFO     | [payload] failed_post thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:57,089 | INFO     | all payload control threads have been joined
[2026-01-11 14:50:34] 2026-01-11 19:49:57,300 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:57,358 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:57,432 | INFO     | [job] job monitor thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:57,678 | INFO     | [data] control thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:57,682 | INFO     | [data] copytool_in thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:57,827 | INFO     | [job] control thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:57,916 | INFO     | [job] validate thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:57,952 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:58,001 | INFO     | [data] copytool_out thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:58,095 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 14:50:34] 2026-01-11 19:49:58,096 | INFO     | [payload] control thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:58,113 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:58,118 | INFO     | [payload] validate_post thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:49:58,423 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 14:50:34] 2026-01-11 19:49:59,101 | INFO     | [job] queue monitor thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:50:02,432 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 14:50:34] 2026-01-11 19:50:25,615 | INFO     | [monitor] cgroup control has ended
[2026-01-11 14:50:34] 2026-01-11 19:50:25,817 | INFO     | PID=149260 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-11 14:50:34] 2026-01-11 19:50:25,817 | INFO     | .. there are 6 such processes running
[2026-01-11 14:50:34] 2026-01-11 19:50:25,818 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 14:50:34] 2026-01-11 19:50:25,819 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 14:50:34] 2026-01-11 19:50:25,819 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 14:50:34] 2026-01-11 19:50:26,460 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140151306254144)>', '<ExcThread(monitor, started 140150948488960)>']
[2026-01-11 14:50:34] 2026-01-11 19:50:26,824 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 14:50:34] 2026-01-11 19:50:26,825 | INFO     | [monitor] control thread has ended
[2026-01-11 14:50:34] 2026-01-11 19:50:31,486 | INFO     | all workflow threads have been joined
[2026-01-11 14:50:34] 2026-01-11 19:50:31,490 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 14:50:34] 2026-01-11 19:50:31,491 | INFO     | traces error code: 0
[2026-01-11 14:50:34] 2026-01-11 19:50:31,491 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 14:50:34] 2026-01-11 19:50:32,044 [wrapper] ==== pilot stdout END ====
[2026-01-11 14:50:34] 2026-01-11 19:50:32,095 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 14:50:34] 2026-01-11 19:50:32,136 [wrapper] pilotpid: 149260
[2026-01-11 14:50:34] 2026-01-11 19:50:32,179 [wrapper] Pilot exit status: 0
[2026-01-11 14:50:34] 2026-01-11 19:50:32,341 [wrapper] pandaids: 6963378508
[2026-01-11 14:50:34] 2026-01-11 19:50:32,971 [wrapper] cleanup supervisor_pilot 3489927 149261
[2026-01-11 14:50:34] 2026-01-11 19:50:33,014 [wrapper] Test setup, not cleaning
[2026-01-11 14:50:34] 2026-01-11 19:50:33,061 [wrapper] apfmon messages muted
[2026-01-11 14:50:34] 2026-01-11 19:50:33,102 [wrapper] ==== wrapper stdout END ====
[2026-01-11 14:50:34] 2026-01-11 19:50:33,115 [wrapper] ==== wrapper stderr END ====
[2026-01-11 14:50:34]  *** Error codes and diagnostics ***
[2026-01-11 14:50:34]     "exeErrorCode": 0,
[2026-01-11 14:50:34]     "exeErrorDiag": "",
[2026-01-11 14:50:34]     "pilotErrorCode": 0,
[2026-01-11 14:50:34]     "pilotErrorDiag": "",
[2026-01-11 14:50:34]  *** Listing of results directory ***
[2026-01-11 14:50:34] total 1192512
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:13 pilot3.tar.gz
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:13 queuedata.json
[2026-01-11 14:50:34] -rwx------. 1 boincer umatlas     36322 Jan  9 02:14 runpilot2-wrapper.sh
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas       100 Jan  9 21:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 14:50:34] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 21:18 run_atlas
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas       105 Jan  9 21:18 job.xml
[2026-01-11 14:50:34] -rw-r--r--. 2 boincer umatlas 392320194 Jan  9 21:18 EVNT.47962006._000088.pool.root.1
[2026-01-11 14:50:34] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 21:18 start_atlas.sh
[2026-01-11 14:50:34] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 21:18 shared
[2026-01-11 14:50:34] -rw-r--r--. 2 boincer umatlas    592615 Jan  9 21:18 input.tar.gz
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas         0 Jan  9 21:18 boinc_lockfile
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas      2892 Jan  9 21:18 pandaJob.out
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas        57 Jan  9 21:18 setup.sh.local
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas    989382 Jan  9 21:18 agis_schedconf.cvmfs.json
[2026-01-11 14:50:34] drwx------. 5 boincer umatlas      4096 Jan  9 21:18 pilot3
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas       534 Jan 11 14:17 boinc_task_state.xml
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas      6659 Jan 11 14:47 init_data.xml
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas 781345806 Jan 11 14:48 HITS.47962010._001101.pool.root.1
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas      1054 Jan 11 14:49 memory_monitor_summary.json
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas   1516240 Jan 11 14:49 agis_ddmendpoints.agis.ALL.json
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas   3216114 Jan 11 14:49 log.47962010._001101.job.log.tgz.1
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas      8626 Jan 11 14:49 heartbeat.json
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas        95 Jan 11 14:50 pilot_heartbeat.json
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas      5008 Jan 11 14:50 pilotlog.txt
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas      8192 Jan 11 14:50 boinc_mmap_file
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas        30 Jan 11 14:50 wrapper_checkpoint.txt
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas  18553026 Jan 11 14:50 log.47962010._001101.job.log.1
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas       353 Jan 11 14:50 output.list
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas       620 Jan 11 14:50 runtime_log
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas  21790720 Jan 11 14:50 result.tar.gz
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas      9339 Jan 11 14:50 runtime_log.err
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas       662 Jan 11 14:50 34FODmGsLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmSHhKDmklspIm.diag
[2026-01-11 14:50:34] -rw-r--r--. 1 boincer umatlas     21223 Jan 11 14:50 stderr.txt
[2026-01-11 14:50:34] HITS file was successfully produced:
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas 781345806 Jan 11 14:48 shared/HITS.pool.root.1
[2026-01-11 14:50:34]  *** Contents of shared directory: ***
[2026-01-11 14:50:34] total 1168048
[2026-01-11 14:50:34] -rw-r--r--. 2 boincer umatlas 392320194 Jan  9 21:18 ATLAS.root_0
[2026-01-11 14:50:34] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 21:18 start_atlas.sh
[2026-01-11 14:50:34] -rw-r--r--. 2 boincer umatlas    592615 Jan  9 21:18 input.tar.gz
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas 781345806 Jan 11 14:48 HITS.pool.root.1
[2026-01-11 14:50:34] -rw-------. 1 boincer umatlas  21790720 Jan 11 14:50 result.tar.gz
14:50:35 (145594): run_atlas exited; CPU time 312530.453785
14:50:35 (145594): called boinc_finish(0)

</stderr_txt>
]]>

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