Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:31:34 (2566753): wrapper (7.7.26015): starting
17:31:34 (2566753): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:31:34] Arguments: --nthreads 8
[2026-01-09 17:31:34] Threads: 8
[2026-01-09 17:31:34] Checking for CVMFS
[2026-01-09 17:31:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:31:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:31:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:31:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:31:35] 2.13.3.0 11754 93968 224608 154959 1 282 25688409 32935936 23330 16776704 0 488419445 99.517 640728263 17729 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 17:31:35] CVMFS is ok
[2026-01-09 17:31:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:31:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:31:35] Further information can be found at the LHC@home message board.
[2026-01-09 17:31:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:31:35] Checking for apptainer binary...
[2026-01-09 17:31:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:31:35] Running /usr/bin/apptainer --version
[2026-01-09 17:31:35] apptainer version 1.4.5-2.el9
[2026-01-09 17:31:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:31:35] c7-2-38.aglt2.org
[2026-01-09 17:31:35] apptainer works
[2026-01-09 17:31:35] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:31:35] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:31:35] Starting ATLAS job with PandaID=6963379037
[2026-01-09 17:31:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 23:53:23]  *** The last 200 lines of the pilot log: ***
[2026-01-10 23:53:23] 2026-01-11 04:52:45,404 | INFO     | time since job start (109258s) is within the limit (349056.0s)
[2026-01-10 23:53:23] 2026-01-11 04:52:45,869 | INFO     | job 6963379037 has state=finished
[2026-01-10 23:53:23] 2026-01-11 04:52:45,869 | INFO     | preparing for final server update for job 6963379037 in state='finished'
[2026-01-10 23:53:23] 2026-01-11 04:52:45,870 | INFO     | this job has now completed (state=finished)
[2026-01-10 23:53:23] 2026-01-11 04:52:45,870 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 23:53:23] 2026-01-11 04:52:45,870 | INFO     | log transfer has been attempted: DONE
[2026-01-10 23:53:23] 2026-01-11 04:52:45,870 | INFO     | job 6963379037 has finished - writing final server update
[2026-01-10 23:53:23] 2026-01-11 04:52:45,870 | INFO     | total number of processed events: 900 (read)
[2026-01-10 23:53:23] 2026-01-11 04:52:45,872 | INFO     | executing command: lscpu
[2026-01-10 23:53:23] 2026-01-11 04:52:45,937 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 23:53:23] 2026-01-11 04:52:47,174 | INFO     | monitor loop #7278: job 0:6963379037 is in state 'finished'
[2026-01-10 23:53:23] 2026-01-11 04:52:47,175 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 23:53:23] 2026-01-11 04:52:47,410 | INFO     | time since job start (109260s) is within the limit (349056.0s)
[2026-01-10 23:53:23] 2026-01-11 04:52:47,410 | INFO     | 109262s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-10 23:53:23] 2026-01-11 04:52:49,415 | INFO     | time since job start (109262s) is within the limit (349056.0s)
[2026-01-10 23:53:23] 2026-01-11 04:52:49,678 | INFO     | monitor loop #7279: job 0:6963379037 is in state 'finished'
[2026-01-10 23:53:23] 2026-01-11 04:52:49,678 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 23:53:23] 2026-01-11 04:52:50,208 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 23:53:23] 2026-01-11 04:52:50,219 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3263.10190625
[2026-01-10 23:53:23] 2026-01-11 04:52:50,235 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6963379037/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 23:53:23] 2026-01-11 04:52:50,235 | INFO     | extracted standard info from prmon json
[2026-01-10 23:53:23] 2026-01-11 04:52:50,235 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 23:53:23] 2026-01-11 04:52:50,235 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 23:53:23] 2026-01-11 04:52:50,254 | INFO     | fitting pss+swap vs Time
[2026-01-10 23:53:23] 2026-01-11 04:52:50,256 | INFO     | sum of square deviations: 1781369827135.4875
[2026-01-10 23:53:23] 2026-01-11 04:52:50,312 | INFO     | sum of deviations: 12833323911383.23
[2026-01-10 23:53:23] 2026-01-11 04:52:50,312 | INFO     | mean x: 1768052542.2730317
[2026-01-10 23:53:23] 2026-01-11 04:52:50,312 | INFO     | mean y: 2804986.418760469
[2026-01-10 23:53:23] 2026-01-11 04:52:50,312 | INFO     | intersect: -12734578695.3408
[2026-01-10 23:53:23] 2026-01-11 04:52:50,314 | INFO     | chi2: 18.324928732762217
[2026-01-10 23:53:23] 2026-01-11 04:52:50,315 | INFO     | sum of square deviations: 1766492411009.8628
[2026-01-10 23:53:23] 2026-01-11 04:52:50,387 | INFO     | sum of deviations: 13281506925772.434
[2026-01-10 23:53:23] 2026-01-11 04:52:50,387 | INFO     | mean x: 1768052389.7765958
[2026-01-10 23:53:23] 2026-01-11 04:52:50,387 | INFO     | mean y: 2809577.6326987683
[2026-01-10 23:53:23] 2026-01-11 04:52:50,387 | INFO     | intersect: -13290426166.596746
[2026-01-10 23:53:23] 2026-01-11 04:52:50,389 | INFO     | chi2: 16.13306551440941
[2026-01-10 23:53:23] 2026-01-11 04:52:50,389 | INFO     | current chi2=16.13306551440941 (change=11.961100915137997 %)
[2026-01-10 23:53:23] 2026-01-11 04:52:50,389 | INFO     | right removable region: 1785
[2026-01-10 23:53:23] 2026-01-11 04:52:50,390 | INFO     | sum of square deviations: 1766491020209.8618
[2026-01-10 23:53:23] 2026-01-11 04:52:50,448 | INFO     | sum of deviations: 12168501147291.018
[2026-01-10 23:53:23] 2026-01-11 04:52:50,448 | INFO     | mean x: 1768052694.7765958
[2026-01-10 23:53:23] 2026-01-11 04:52:50,448 | INFO     | mean y: 2811799.599104143
[2026-01-10 23:53:23] 2026-01-11 04:52:50,448 | INFO     | intersect: -12176446967.481422
[2026-01-10 23:53:23] 2026-01-11 04:52:50,449 | INFO     | chi2: 14.531118892953552
[2026-01-10 23:53:23] 2026-01-11 04:52:50,449 | INFO     | current chi2=14.531118892953552 (change=20.702999150146233 %)
[2026-01-10 23:53:23] 2026-01-11 04:52:50,449 | INFO     | left removable region: 10
[2026-01-10 23:53:23] 2026-01-11 04:52:50,451 | INFO     | sum of square deviations: 1734051397549.3247
[2026-01-10 23:53:23] 2026-01-11 04:52:50,505 | INFO     | sum of deviations: 12010290064161.115
[2026-01-10 23:53:23] 2026-01-11 04:52:50,505 | INFO     | mean x: 1768052664.284507
[2026-01-10 23:53:23] 2026-01-11 04:52:50,505 | INFO     | mean y: 2823236.3126760563
[2026-01-10 23:53:23] 2026-01-11 04:52:50,505 | INFO     | intersect: -12242964504.915903
[2026-01-10 23:53:23] 2026-01-11 04:52:50,506 | INFO     | chi2: 8.901332930973
[2026-01-10 23:53:23] 2026-01-11 04:52:50,506 | INFO     | current memory leak: 6.93 B/s (using 1775 data points, chi2=8.90)
[2026-01-10 23:53:23] 2026-01-11 04:52:50,508 | INFO     | could have reported an average CPU frequency of 3315 MHz (64 samples)
[2026-01-10 23:53:23] 2026-01-11 04:52:50,508 | INFO     | ..............................
[2026-01-10 23:53:23] 2026-01-11 04:52:50,508 | INFO     | . Timing measurements:
[2026-01-10 23:53:23] 2026-01-11 04:52:50,508 | INFO     | . get job = 0 s
[2026-01-10 23:53:23] 2026-01-11 04:52:50,508 | INFO     | . initial setup = 2 s
[2026-01-10 23:53:23] 2026-01-11 04:52:50,508 | INFO     | . payload setup = 11 s
[2026-01-10 23:53:23] 2026-01-11 04:52:50,508 | INFO     | . stage-in = 0 s
[2026-01-10 23:53:23] 2026-01-11 04:52:50,508 | INFO     | . payload execution = 109217 s
[2026-01-10 23:53:23] 2026-01-11 04:52:50,508 | INFO     | . stage-out = 3 s
[2026-01-10 23:53:23] 2026-01-11 04:52:50,508 | INFO     | . log creation = 1 s
[2026-01-10 23:53:23] 2026-01-11 04:52:50,509 | INFO     | ..............................
[2026-01-10 23:53:23] 2026-01-11 04:52:50,573 | INFO     | 
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | job summary report
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | --------------------------------------------------
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | PanDA job id: 6963379037
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | task id: 47962010
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | errors: (none)
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | pilot state: finished 
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | transexitcode: 0
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | exeerrorcode: 0
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | exeerrordiag: 
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | exitcode: 0
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | exitmsg: OK
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | cpuconsumptiontime: 198920 s
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | nevents: 900
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | neventsw: 0
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | pid: 2578960
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | pgrp: 2578960
[2026-01-10 23:53:23] 2026-01-11 04:52:50,574 | INFO     | corecount: 8
[2026-01-10 23:53:23] 2026-01-11 04:52:50,575 | INFO     | event service: False
[2026-01-10 23:53:23] 2026-01-11 04:52:50,575 | INFO     | sizes: {0: 2284622, 7: 2284884, 11: 2284912, 109232: 2360734, 109235: 2369728, 109236: 2369784, 109244: 2370158}
[2026-01-10 23:53:23] 2026-01-11 04:52:50,575 | INFO     | --------------------------------------------------
[2026-01-10 23:53:23] 2026-01-11 04:52:50,575 | INFO     | 
[2026-01-10 23:53:23] 2026-01-11 04:52:50,575 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-01-10 23:53:23] 2026-01-11 04:52:50,593 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,593 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,593 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,593 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,593 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,593 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,593 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,593 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,593 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,593 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | job 6963379037 has completed (purged errors)
[2026-01-10 23:53:23] 2026-01-11 04:52:50,594 | INFO     | overall cleanup function is called
[2026-01-10 23:53:23] 2026-01-11 04:52:51,609 | INFO     | --- collectZombieJob: --- 10, [2578960]
[2026-01-10 23:53:23] 2026-01-11 04:52:51,609 | INFO     | zombie collector waiting for pid 2578960
[2026-01-10 23:53:23] 2026-01-11 04:52:51,610 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 23:53:23] 2026-01-11 04:52:51,610 | INFO     | collected zombie processes
[2026-01-10 23:53:23] 2026-01-11 04:52:51,610 | INFO     | will attempt to kill all subprocesses of pid=2578960
[2026-01-10 23:53:23] 2026-01-11 04:52:52,017 | INFO     | process IDs to be killed: [2578960] (in reverse order)
[2026-01-10 23:53:23] 2026-01-11 04:52:52,124 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 23:53:23] 2026-01-11 04:52:52,125 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 23:53:23] 2026-01-11 04:52:52,138 | INFO     | did not find any defunct processes belonging to 2578960
[2026-01-10 23:53:23] 2026-01-11 04:52:52,149 | INFO     | did not find any defunct processes belonging to 2578960
[2026-01-10 23:53:23] 2026-01-11 04:52:52,150 | INFO     | ready for new job
[2026-01-10 23:53:23] 2026-01-11 04:52:52,150 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 23:53:23] 2026-01-11 04:52:52,155 | INFO     | ***************************************
[2026-01-10 23:53:23] 2026-01-11 04:52:52,155 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 23:53:23] 2026-01-11 04:52:52,155 | INFO     | ***************************************
[2026-01-10 23:53:23] 2026-01-11 04:52:52,155 | INFO     | 
[2026-01-10 23:53:23] 2026-01-11 04:52:52,158 | INFO     | architecture information:
[2026-01-10 23:53:23] 2026-01-11 04:52:52,158 | INFO     | executing command: cat /etc/os-release
[2026-01-10 23:53:23] 2026-01-11 04:52:52,174 | INFO     | cat /etc/os-release:
[2026-01-10 23:53:23] NAME="CentOS Linux"
[2026-01-10 23:53:23] VERSION="7 (Core)"
[2026-01-10 23:53:23] ID="centos"
[2026-01-10 23:53:23] ID_LIKE="rhel fedora"
[2026-01-10 23:53:23] VERSION_ID="7"
[2026-01-10 23:53:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 23:53:23] ANSI_COLOR="0;31"
[2026-01-10 23:53:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 23:53:23] HOME_URL="https://www.centos.org/"
[2026-01-10 23:53:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 23:53:23] 
[2026-01-10 23:53:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 23:53:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 23:53:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 23:53:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 23:53:23] 
[2026-01-10 23:53:23] 2026-01-11 04:52:52,174 | INFO     | ***************************************
[2026-01-10 23:53:23] 2026-01-11 04:52:52,680 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-01-10 23:53:23] 2026-01-11 04:52:52,699 | INFO     | sufficient remaining disk space (75619106816 B)
[2026-01-10 23:53:23] 2026-01-11 04:52:52,699 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 23:53:23] 2026-01-11 04:52:52,700 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 23:53:23] 2026-01-11 04:52:52,700 | INFO     | update_server=False
[2026-01-10 23:53:23] 2026-01-11 04:52:52,700 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 23:53:23] 2026-01-11 04:52:52,885 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 23:53:23] 2026-01-11 04:52:53,189 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 23:53:23] 2026-01-11 04:52:53,190 | INFO     | aborting loop
[2026-01-10 23:53:23] 2026-01-11 04:52:53,246 | INFO     | all job control threads have been joined
[2026-01-10 23:53:23] 2026-01-11 04:52:53,540 | INFO     | all payload control threads have been joined
[2026-01-10 23:53:23] 2026-01-11 04:52:53,695 | INFO     | all data control threads have been joined
[2026-01-10 23:53:23] 2026-01-11 04:52:53,705 | INFO     | [job] retrieve thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:53,788 | INFO     | [monitor] cgroup control has ended
[2026-01-10 23:53:23] 2026-01-11 04:52:53,917 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 23:53:23] 2026-01-11 04:52:54,194 | INFO     | [job] job monitor thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:54,255 | INFO     | [job] control thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:54,259 | INFO     | [payload] validate_post thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:54,549 | INFO     | [payload] control thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:54,700 | INFO     | [data] control thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:54,760 | INFO     | [payload] failed_post thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:54,797 | INFO     | [data] copytool_in thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:54,816 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:54,890 | INFO     | [data] copytool_out thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:54,928 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:55,021 | INFO     | [job] validate thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:55,057 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:55,586 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 23:53:23] 2026-01-11 04:52:56,593 | INFO     | [job] queue monitor thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:52:57,925 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:53:03,161 | INFO     | job.realtimelogging is not enabled
[2026-01-10 23:53:23] 2026-01-11 04:53:04,167 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 23:53:23] 2026-01-11 04:53:06,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140033281648448)>', '<ExcThread(monitor, started 140032929142528)>']
[2026-01-10 23:53:23] 2026-01-11 04:53:11,291 | INFO     | all workflow threads have been joined
[2026-01-10 23:53:23] 2026-01-11 04:53:11,291 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 23:53:23] 2026-01-11 04:53:11,292 | INFO     | traces error code: 0
[2026-01-10 23:53:23] 2026-01-11 04:53:11,292 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 23:53:23] 2026-01-11 04:53:23,054 | INFO     | PID=2571288 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 23:53:23] 2026-01-11 04:53:23,054 | INFO     | .. there are 26 such processes running
[2026-01-10 23:53:23] 2026-01-11 04:53:23,055 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 23:53:23] 2026-01-11 04:53:23,055 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 23:53:23] 2026-01-11 04:53:23,055 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 23:53:23] 2026-01-11 04:53:23,055 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 23:53:23] 2026-01-11 04:53:23,055 | INFO     | [monitor] control thread has ended
[2026-01-10 23:53:23] 2026-01-11 04:53:23,158 [wrapper] ==== pilot stdout END ====
[2026-01-10 23:53:23] 2026-01-11 04:53:23,160 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 23:53:23] 2026-01-11 04:53:23,163 [wrapper] pilotpid: 2571288
[2026-01-10 23:53:23] 2026-01-11 04:53:23,165 [wrapper] Pilot exit status: 0
[2026-01-10 23:53:23] 2026-01-11 04:53:23,176 [wrapper] pandaids: 6963379037
[2026-01-10 23:53:23] 2026-01-11 04:53:23,274 [wrapper] cleanup supervisor_pilot 3935984 2571289
[2026-01-10 23:53:23] 2026-01-11 04:53:23,278 [wrapper] Test setup, not cleaning
[2026-01-10 23:53:23] 2026-01-11 04:53:23,282 [wrapper] apfmon messages muted
[2026-01-10 23:53:23] 2026-01-11 04:53:23,284 [wrapper] ==== wrapper stdout END ====
[2026-01-10 23:53:23] 2026-01-11 04:53:23,288 [wrapper] ==== wrapper stderr END ====
[2026-01-10 23:53:23]  *** Error codes and diagnostics ***
[2026-01-10 23:53:23]     "exeErrorCode": 0,
[2026-01-10 23:53:23]     "exeErrorDiag": "",
[2026-01-10 23:53:23]     "pilotErrorCode": 0,
[2026-01-10 23:53:23]     "pilotErrorDiag": "",
[2026-01-10 23:53:23]  *** Listing of results directory ***
[2026-01-10 23:53:23] total 1191184
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:13 pilot3.tar.gz
[2026-01-10 23:53:23] -rwx------. 1 boincer umatlas     36322 Jan  9 02:15 runpilot2-wrapper.sh
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:16 queuedata.json
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas       100 Jan  9 17:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 23:53:23] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 17:31 run_atlas
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas       105 Jan  9 17:31 job.xml
[2026-01-10 23:53:23] -rw-r--r--. 2 boincer umatlas 393896601 Jan  9 17:31 EVNT.47962006._000108.pool.root.1
[2026-01-10 23:53:23] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:31 start_atlas.sh
[2026-01-10 23:53:23] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 17:31 shared
[2026-01-10 23:53:23] -rw-r--r--. 2 boincer umatlas    592610 Jan  9 17:31 input.tar.gz
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas         0 Jan  9 17:31 boinc_lockfile
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas      2892 Jan  9 17:31 pandaJob.out
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas        57 Jan  9 17:31 setup.sh.local
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas    989375 Jan  9 17:31 agis_schedconf.cvmfs.json
[2026-01-10 23:53:23] drwx------. 5 boincer umatlas      4096 Jan  9 17:31 pilot3
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas       534 Jan 10 23:46 boinc_task_state.xml
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas      6946 Jan 10 23:47 init_data.xml
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas 787242073 Jan 10 23:52 HITS.47962010._001327.pool.root.1
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas      1070 Jan 10 23:52 memory_monitor_summary.json
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas   1516240 Jan 10 23:52 agis_ddmendpoints.agis.ALL.json
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas   2737394 Jan 10 23:52 log.47962010._001327.job.log.tgz.1
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas      8612 Jan 10 23:52 heartbeat.json
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 23:53 boinc_mmap_file
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas        30 Jan 10 23:53 wrapper_checkpoint.txt
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas       823 Jan 10 23:53 pilotlog.txt
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas        95 Jan 10 23:53 pilot_heartbeat.json
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas  14616370 Jan 10 23:53 log.47962010._001327.job.log.1
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas       353 Jan 10 23:53 output.list
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas       620 Jan 10 23:53 runtime_log
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas  17377280 Jan 10 23:53 result.tar.gz
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas      9339 Jan 10 23:53 runtime_log.err
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas       668 Jan 10 23:53 pmGKDmHtLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVKhKDmvpi1Wn.diag
[2026-01-10 23:53:23] -rw-r--r--. 1 boincer umatlas     21608 Jan 10 23:53 stderr.txt
[2026-01-10 23:53:23] HITS file was successfully produced:
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas 787242073 Jan 10 23:52 shared/HITS.pool.root.1
[2026-01-10 23:53:23]  *** Contents of shared directory: ***
[2026-01-10 23:53:23] total 1171036
[2026-01-10 23:53:23] -rw-r--r--. 2 boincer umatlas 393896601 Jan  9 17:31 ATLAS.root_0
[2026-01-10 23:53:23] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:31 start_atlas.sh
[2026-01-10 23:53:23] -rw-r--r--. 2 boincer umatlas    592610 Jan  9 17:31 input.tar.gz
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas 787242073 Jan 10 23:52 HITS.pool.root.1
[2026-01-10 23:53:23] -rw-------. 1 boincer umatlas  17377280 Jan 10 23:53 result.tar.gz
23:53:25 (2566753): run_atlas exited; CPU time 200293.602984
23:53:25 (2566753): called boinc_finish(0)

</stderr_txt>
]]>

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