Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:32:14 (2449836): wrapper (7.7.26015): starting
09:32:14 (2449836): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 09:32:14] Arguments: --nthreads 3
[2026-01-10 09:32:14] Threads: 3
[2026-01-10 09:32:14] Checking for CVMFS
[2026-01-10 09:32:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:32:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:32:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:32:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:32:14] 2.9.2.0 1566360 3559 85124 154973 0 57 23035509 36864001 0 130560 0 2308922 99.988 134610 6792 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 09:32:14] CVMFS is ok
[2026-01-10 09:32:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:32:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:32:14] Further information can be found at the LHC@home message board.
[2026-01-10 09:32:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:32:14] Checking for apptainer binary...
[2026-01-10 09:32:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:32:14] Running /usr/bin/apptainer --version
[2026-01-10 09:32:14] apptainer version 1.4.1-1.1
[2026-01-10 09:32:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:32:14] magicA161a
[2026-01-10 09:32:14] apptainer works
[2026-01-10 09:32:14] Set ATHENA_PROC_NUMBER=3
[2026-01-10 09:32:14] Set ATHENA_CORE_NUMBER=3
[2026-01-10 09:32:14] Starting ATLAS job with PandaID=6963378798
[2026-01-10 09:32:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 17:58:05]  *** The last 200 lines of the pilot log: ***
[2026-01-10 17:58:05] 2026-01-10 16:57:41,734 | INFO     | --- collectZombieJob: --- 10, [2460003]
[2026-01-10 17:58:05] 2026-01-10 16:57:41,734 | INFO     | zombie collector waiting for pid 2460003
[2026-01-10 17:58:05] 2026-01-10 16:57:41,734 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 17:58:05] 2026-01-10 16:57:41,734 | INFO     | collected zombie processes
[2026-01-10 17:58:05] 2026-01-10 16:57:41,734 | INFO     | will attempt to kill all subprocesses of pid=2460003
[2026-01-10 17:58:05] 2026-01-10 16:57:41,777 | INFO     | process IDs to be killed: [2460003] (in reverse order)
[2026-01-10 17:58:05] 2026-01-10 16:57:41,801 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 17:58:05] 2026-01-10 16:57:41,801 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 17:58:05] 2026-01-10 16:57:41,802 | INFO     | did not find any defunct processes belonging to 2460003
[2026-01-10 17:58:05] 2026-01-10 16:57:41,803 | INFO     | did not find any defunct processes belonging to 2460003
[2026-01-10 17:58:05] 2026-01-10 16:57:41,803 | INFO     | ready for new job
[2026-01-10 17:58:05] 2026-01-10 16:57:41,803 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 17:58:05] 2026-01-10 16:57:41,805 | INFO     | ***************************************
[2026-01-10 17:58:05] 2026-01-10 16:57:41,805 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 17:58:05] 2026-01-10 16:57:41,805 | INFO     | ***************************************
[2026-01-10 17:58:05] 2026-01-10 16:57:41,805 | INFO     | 
[2026-01-10 17:58:05] 2026-01-10 16:57:41,805 | INFO     | architecture information:
[2026-01-10 17:58:05] 2026-01-10 16:57:41,805 | INFO     | executing command: cat /etc/os-release
[2026-01-10 17:58:05] 2026-01-10 16:57:41,814 | INFO     | cat /etc/os-release:
[2026-01-10 17:58:05] NAME="CentOS Linux"
[2026-01-10 17:58:05] VERSION="7 (Core)"
[2026-01-10 17:58:05] ID="centos"
[2026-01-10 17:58:05] ID_LIKE="rhel fedora"
[2026-01-10 17:58:05] VERSION_ID="7"
[2026-01-10 17:58:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 17:58:05] ANSI_COLOR="0;31"
[2026-01-10 17:58:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 17:58:05] HOME_URL="https://www.centos.org/"
[2026-01-10 17:58:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 17:58:05] 
[2026-01-10 17:58:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 17:58:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 17:58:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 17:58:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 17:58:05] 
[2026-01-10 17:58:05] 2026-01-10 16:57:41,814 | INFO     | ***************************************
[2026-01-10 17:58:05] 2026-01-10 16:57:42,317 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 17:58:05] 2026-01-10 16:57:42,330 | INFO     | sufficient remaining disk space (381914447872 B)
[2026-01-10 17:58:05] 2026-01-10 16:57:42,330 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 17:58:05] 2026-01-10 16:57:42,330 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 17:58:05] 2026-01-10 16:57:42,330 | INFO     | update_server=False
[2026-01-10 17:58:05] 2026-01-10 16:57:42,330 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 17:58:05] 2026-01-10 16:57:42,330 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 17:58:05] 2026-01-10 16:57:42,330 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 17:58:05] 2026-01-10 16:57:42,330 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 17:58:05] 2026-01-10 16:57:42,330 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 17:58:05] 2026-01-10 16:57:42,331 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 17:58:05] 2026-01-10 16:57:42,331 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 17:58:05] 2026-01-10 16:57:42,430 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 17:58:05] 2026-01-10 16:57:42,512 | INFO     | all data control threads have been joined
[2026-01-10 17:58:05] 2026-01-10 16:57:42,686 | INFO     | all payload control threads have been joined
[2026-01-10 17:58:05] 2026-01-10 16:57:42,699 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 17:58:05] 2026-01-10 16:57:42,699 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 17:58:05] 2026-01-10 16:57:42,699 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 17:58:05] 2026-01-10 16:57:42,699 | INFO     | will abort loop
[2026-01-10 17:58:05] 2026-01-10 16:57:42,754 | INFO     | all job control threads have been joined
[2026-01-10 17:58:05] 2026-01-10 16:57:43,336 | INFO     | [job] retrieve thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:43,336 | INFO     | [job] queue monitor thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:43,518 | INFO     | [data] control thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:43,692 | INFO     | [payload] control thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:43,705 | INFO     | [job] job monitor thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:43,760 | INFO     | [job] control thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:43,894 | INFO     | [data] copytool_in thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:44,061 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:44,222 | INFO     | [payload] failed_post thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:44,417 | INFO     | [job] validate thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:44,436 | INFO     | [data] copytool_out thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:44,461 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:44,461 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:44,793 | INFO     | [payload] validate_post thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:46,337 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:52,754 | INFO     | job.realtimelogging is not enabled
[2026-01-10 17:58:05] 2026-01-10 16:57:53,759 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 17:58:05] 2026-01-10 16:57:59,291 | INFO     | [monitor] cgroup control has ended
[2026-01-10 17:58:05] 2026-01-10 16:57:59,944 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140260364793664)>', '<ExcThread(monitor, started 140260092647168)>']
[2026-01-10 17:58:05] 2026-01-10 16:58:00,421 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 17:58:05] 2026-01-10 16:58:00,421 | INFO     | [monitor] control thread has ended
[2026-01-10 17:58:05] 2026-01-10 16:58:04,970 | INFO     | all workflow threads have been joined
[2026-01-10 17:58:05] 2026-01-10 16:58:04,970 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 17:58:05] 2026-01-10 16:58:04,971 | INFO     | traces error code: 0
[2026-01-10 17:58:05] 2026-01-10 16:58:04,971 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 17:58:05] 2026-01-10 16:58:05,020 [wrapper] ==== pilot stdout END ====
[2026-01-10 17:58:05] 2026-01-10 16:58:05,023 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 17:58:05] 2026-01-10 16:58:05,025 [wrapper] pilotpid: 2453560
[2026-01-10 17:58:05] 2026-01-10 16:58:05,027 [wrapper] Pilot exit status: 0
[2026-01-10 17:58:05] 2026-01-10 16:58:05,034 [wrapper] pandaids: 6963378798
[2026-01-10 17:58:05] 2026-01-10 16:58:05,050 [wrapper] cleanup supervisor_pilot 2512102 2453561
[2026-01-10 17:58:05] 2026-01-10 16:58:05,052 [wrapper] Test setup, not cleaning
[2026-01-10 17:58:05] 2026-01-10 16:58:05,054 [wrapper] apfmon messages muted
[2026-01-10 17:58:05] 2026-01-10 16:58:05,056 [wrapper] ==== wrapper stdout END ====
[2026-01-10 17:58:05] 2026-01-10 16:58:05,058 [wrapper] ==== wrapper stderr END ====
[2026-01-10 17:58:05]  *** Error codes and diagnostics ***
[2026-01-10 17:58:05]     "exeErrorCode": 0,
[2026-01-10 17:58:05]     "exeErrorDiag": "",
[2026-01-10 17:58:05]     "pilotErrorCode": 0,
[2026-01-10 17:58:05]     "pilotErrorDiag": "",
[2026-01-10 17:58:05]  *** Listing of results directory ***
[2026-01-10 17:58:05] total 1173544
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc    579449 Jan  9 08:13 pilot3.tar.gz
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc      5112 Jan  9 08:13 queuedata.json
[2026-01-10 17:58:05] -rwx------ 1 boinc boinc     36322 Jan  9 08:14 runpilot2-wrapper.sh
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc       100 Jan 10 09:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 17:58:05] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 09:32 run_atlas
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc       105 Jan 10 09:32 job.xml
[2026-01-10 17:58:05] -rw-r--r-- 2 boinc boinc 391833146 Jan 10 09:32 EVNT.47962006._000104.pool.root.1
[2026-01-10 17:58:05] -rw-r--r-- 2 boinc boinc    592614 Jan 10 09:32 input.tar.gz
[2026-01-10 17:58:05] -rw-r--r-- 2 boinc boinc     15847 Jan 10 09:32 start_atlas.sh
[2026-01-10 17:58:05] drwxrwx--x 2 boinc boinc      4096 Jan 10 09:32 shared
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc         0 Jan 10 09:32 boinc_setup_complete
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc      6448 Jan 10 09:32 init_data.xml
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc         0 Jan 10 09:32 boinc_lockfile
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc      2892 Jan 10 09:32 pandaJob.out
[2026-01-10 17:58:05] -rw------- 1 boinc boinc    989548 Jan 10 09:32 agis_schedconf.cvmfs.json
[2026-01-10 17:58:05] drwx------ 5 boinc boinc      4096 Jan 10 09:32 pilot3
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc       532 Jan 10 17:54 boinc_task_state.xml
[2026-01-10 17:58:05] -rw------- 1 boinc boinc        95 Jan 10 17:56 pilot_heartbeat.json
[2026-01-10 17:58:05] -rw------- 1 boinc boinc 795094114 Jan 10 17:57 HITS.47962010._001279.pool.root.1
[2026-01-10 17:58:05] -rw------- 1 boinc boinc      1017 Jan 10 17:57 memory_monitor_summary.json
[2026-01-10 17:58:05] -rw------- 1 boinc boinc   1516240 Jan 10 17:57 agis_ddmendpoints.agis.ALL.json
[2026-01-10 17:58:05] -rw------- 1 boinc boinc   1167698 Jan 10 17:57 log.47962010._001279.job.log.tgz.1
[2026-01-10 17:58:05] -rw------- 1 boinc boinc      8555 Jan 10 17:57 heartbeat.json
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc      8192 Jan 10 17:58 boinc_mmap_file
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc        28 Jan 10 17:58 wrapper_checkpoint.txt
[2026-01-10 17:58:05] -rw------- 1 boinc boinc      4814 Jan 10 17:58 pilotlog.txt
[2026-01-10 17:58:05] -rw------- 1 boinc boinc   4267703 Jan 10 17:58 log.47962010._001279.job.log.1
[2026-01-10 17:58:05] -rw------- 1 boinc boinc       353 Jan 10 17:58 output.list
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc       620 Jan 10 17:58 runtime_log
[2026-01-10 17:58:05] -rw------- 1 boinc boinc   5457920 Jan 10 17:58 result.tar.gz
[2026-01-10 17:58:05] -rw------- 1 boinc boinc       669 Jan 10 17:58 zatLDmSsLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaHhKDmBISEVn.diag
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc      8918 Jan 10 17:58 runtime_log.err
[2026-01-10 17:58:05] -rw-r--r-- 1 boinc boinc     10864 Jan 10 17:58 stderr.txt
[2026-01-10 17:58:05] HITS file was successfully produced:
[2026-01-10 17:58:05] -rw------- 1 boinc boinc 795094114 Jan 10 17:57 shared/HITS.pool.root.1
[2026-01-10 17:58:05]  *** Contents of shared directory: ***
[2026-01-10 17:58:05] total 1165048
[2026-01-10 17:58:05] -rw-r--r-- 2 boinc boinc 391833146 Jan 10 09:32 ATLAS.root_0
[2026-01-10 17:58:05] -rw-r--r-- 2 boinc boinc    592614 Jan 10 09:32 input.tar.gz
[2026-01-10 17:58:05] -rw-r--r-- 2 boinc boinc     15847 Jan 10 09:32 start_atlas.sh
[2026-01-10 17:58:05] -rw------- 1 boinc boinc 795094114 Jan 10 17:57 HITS.pool.root.1
[2026-01-10 17:58:05] -rw------- 1 boinc boinc   5457920 Jan 10 17:58 result.tar.gz
17:58:06 (2449836): run_atlas exited; CPU time 89646.794633
17:58:06 (2449836): called boinc_finish(0)

</stderr_txt>
]]>

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