Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
17:08:43 (955): wrapper (7.7.26015): starting
17:08:43 (955): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 17:08:43] Arguments: --nthreads 12
[2026-01-10 17:08:43] Threads: 12
[2026-01-10 17:08:43] Checking for CVMFS
[2026-01-10 17:08:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 17:08:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 17:08:44] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 17:08:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 17:08:45] 2.13.3.0 40677 2116 54256 154986 1 253 3108891 4096000 10516 130560 0 11742589 99.956 292461 273 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-10 17:08:45] CVMFS is ok
[2026-01-10 17:08:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 17:08:45] Checking for apptainer binary...
[2026-01-10 17:08:45] apptainer is not installed, using version from CVMFS
[2026-01-10 17:08:45] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 17:08:47] epyc7v12
[2026-01-10 17:08:47] apptainer works
[2026-01-10 17:08:47] Set ATHENA_PROC_NUMBER=12
[2026-01-10 17:08:47] Set ATHENA_CORE_NUMBER=12
[2026-01-10 17:08:47] Starting ATLAS job with PandaID=6963375730
[2026-01-10 17:08:47] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31421/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 04:55:41]  *** The last 200 lines of the pilot log: ***
[2026-01-11 04:55:41] 2026-01-11 04:54:37,981 | INFO     | fitting pss+swap vs Time
[2026-01-11 04:55:41] 2026-01-11 04:54:37,983 | INFO     | sum of square deviations: 102752832524.8092
[2026-01-11 04:55:41] 2026-01-11 04:54:38,008 | INFO     | sum of deviations: 983307342381.0784
[2026-01-11 04:55:41] 2026-01-11 04:54:38,009 | INFO     | mean x: 1768086118.1271677
[2026-01-11 04:55:41] 2026-01-11 04:54:38,009 | INFO     | mean y: 3376632.2832369944
[2026-01-11 04:55:41] 2026-01-11 04:54:38,009 | INFO     | intersect: -16916566294.80573
[2026-01-11 04:55:41] 2026-01-11 04:54:38,011 | INFO     | chi2: 11.82645605281822
[2026-01-11 04:55:41] 2026-01-11 04:54:38,013 | INFO     | sum of square deviations: 100541915876.47441
[2026-01-11 04:55:41] 2026-01-11 04:54:38,049 | INFO     | sum of deviations: 1265155833449.0325
[2026-01-11 04:55:41] 2026-01-11 04:54:38,050 | INFO     | mean x: 1768085965.6390102
[2026-01-11 04:55:41] 2026-01-11 04:54:38,050 | INFO     | mean y: 3396071.580786026
[2026-01-11 04:55:41] 2026-01-11 04:54:38,050 | INFO     | intersect: -22245078646.325077
[2026-01-11 04:55:41] 2026-01-11 04:54:38,053 | INFO     | chi2: 8.403888877890552
[2026-01-11 04:55:41] 2026-01-11 04:54:38,053 | INFO     | current chi2=8.403888877890552 (change=28.939922151167824 %)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,056 | INFO     | sum of square deviations: 98362953315.4441
[2026-01-11 04:55:41] 2026-01-11 04:54:38,081 | INFO     | sum of deviations: 1495304260284.2427
[2026-01-11 04:55:41] 2026-01-11 04:54:38,081 | INFO     | mean x: 1768085813.1510265
[2026-01-11 04:55:41] 2026-01-11 04:54:38,082 | INFO     | mean y: 3412157.7258064514
[2026-01-11 04:55:41] 2026-01-11 04:54:38,082 | INFO     | intersect: -26874860198.27256
[2026-01-11 04:55:41] 2026-01-11 04:54:38,082 | INFO     | chi2: 5.892657465985565
[2026-01-11 04:55:41] 2026-01-11 04:54:38,083 | INFO     | current chi2=5.892657465985565 (change=29.881777929164237 %)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,083 | INFO     | sum of square deviations: 96215670923.53908
[2026-01-11 04:55:41] 2026-01-11 04:54:38,106 | INFO     | sum of deviations: 1630262515096.8257
[2026-01-11 04:55:41] 2026-01-11 04:54:38,110 | INFO     | mean x: 1768085660.661743
[2026-01-11 04:55:41] 2026-01-11 04:54:38,110 | INFO     | mean y: 3421735.1477104872
[2026-01-11 04:55:41] 2026-01-11 04:54:38,110 | INFO     | intersect: -29954731114.48189
[2026-01-11 04:55:41] 2026-01-11 04:54:38,111 | INFO     | chi2: 4.938199325751434
[2026-01-11 04:55:41] 2026-01-11 04:54:38,111 | INFO     | current chi2=4.938199325751434 (change=16.19741425228922 %)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,111 | INFO     | right removable region: 676
[2026-01-11 04:55:41] 2026-01-11 04:54:38,112 | INFO     | sum of square deviations: 100541229016.47444
[2026-01-11 04:55:41] 2026-01-11 04:54:38,139 | INFO     | sum of deviations: 680074224642.7692
[2026-01-11 04:55:41] 2026-01-11 04:54:38,140 | INFO     | mean x: 1768086270.6390102
[2026-01-11 04:55:41] 2026-01-11 04:54:38,140 | INFO     | mean y: 3397533.7772925766
[2026-01-11 04:55:41] 2026-01-11 04:54:38,140 | INFO     | intersect: -11956172797.408165
[2026-01-11 04:55:41] 2026-01-11 04:54:38,141 | INFO     | chi2: 8.253992164599456
[2026-01-11 04:55:41] 2026-01-11 04:54:38,141 | INFO     | current chi2=8.253992164599456 (change=30.207391565687615 %)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,142 | INFO     | sum of square deviations: 98361788649.91779
[2026-01-11 04:55:41] 2026-01-11 04:54:38,168 | INFO     | sum of deviations: 538849987421.3568
[2026-01-11 04:55:41] 2026-01-11 04:54:38,171 | INFO     | mean x: 1768086423.143695
[2026-01-11 04:55:41] 2026-01-11 04:54:38,171 | INFO     | mean y: 3407398.3739002934
[2026-01-11 04:55:41] 2026-01-11 04:54:38,171 | INFO     | intersect: -9682603398.580515
[2026-01-11 04:55:41] 2026-01-11 04:54:38,172 | INFO     | chi2: 7.420509861626431
[2026-01-11 04:55:41] 2026-01-11 04:54:38,172 | INFO     | current chi2=7.420509861626431 (change=10.097929418297092 %)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,172 | INFO     | left removable region: 20
[2026-01-11 04:55:41] 2026-01-11 04:54:38,174 | INFO     | sum of square deviations: 87536601261.48752
[2026-01-11 04:55:41] 2026-01-11 04:54:38,196 | INFO     | sum of deviations: 1061797246299.2267
[2026-01-11 04:55:41] 2026-01-11 04:54:38,197 | INFO     | mean x: 1768086240.1768293
[2026-01-11 04:55:41] 2026-01-11 04:54:38,198 | INFO     | mean y: 3464688.2911585364
[2026-01-11 04:55:41] 2026-01-11 04:54:38,198 | INFO     | intersect: -21442982557.602386
[2026-01-11 04:55:41] 2026-01-11 04:54:38,199 | INFO     | chi2: 0.2213835470940334
[2026-01-11 04:55:41] 2026-01-11 04:54:38,199 | INFO     | current memory leak: 12.13 B/s (using 656 data points, chi2=0.22)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | could have reported an average CPU frequency of 2502 MHz (27 samples)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | ..............................
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | . Timing measurements:
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | . get job = 0 s
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | . initial setup = 3 s
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | . payload setup = 20 s
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | . stage-in = 0 s
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | . payload execution = 42223 s
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | . stage-out = 6 s
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | . log creation = 1 s
[2026-01-11 04:55:41] 2026-01-11 04:54:38,203 | INFO     | ..............................
[2026-01-11 04:55:41] 2026-01-11 04:54:38,366 | INFO     | 
[2026-01-11 04:55:41] 2026-01-11 04:54:38,366 | INFO     | job summary report
[2026-01-11 04:55:41] 2026-01-11 04:54:38,366 | INFO     | --------------------------------------------------
[2026-01-11 04:55:41] 2026-01-11 04:54:38,366 | INFO     | PanDA job id: 6963375730
[2026-01-11 04:55:41] 2026-01-11 04:54:38,366 | INFO     | task id: 47962010
[2026-01-11 04:55:41] 2026-01-11 04:54:38,366 | INFO     | errors: (none)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,366 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 04:55:41] 2026-01-11 04:54:38,366 | INFO     | pilot state: finished 
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | transexitcode: 0
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | exeerrorcode: 0
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | exeerrordiag: 
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | exitcode: 0
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | exitmsg: OK
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | cpuconsumptiontime: 276799 s
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | nevents: 900
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | neventsw: 0
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | pid: 12715
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | pgrp: 12715
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | corecount: 12
[2026-01-11 04:55:41] 2026-01-11 04:54:38,367 | INFO     | event service: False
[2026-01-11 04:55:41] 2026-01-11 04:54:38,368 | INFO     | sizes: {0: 2284472, 1: 2284671, 2: 2284671, 12: 2284699, 19: 2284989, 23: 2285017, 42249: 2330615, 42257: 2339711, 42276: 2339901}
[2026-01-11 04:55:41] 2026-01-11 04:54:38,368 | INFO     | --------------------------------------------------
[2026-01-11 04:55:41] 2026-01-11 04:54:38,368 | INFO     | 
[2026-01-11 04:55:41] 2026-01-11 04:54:38,368 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31421/slots/1
[2026-01-11 04:55:41] 2026-01-11 04:54:38,391 | INFO     | time since job start (42316s) is within the limit (349056.0s)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,425 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,425 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,425 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,425 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,425 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,425 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,425 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,425 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,425 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 04:55:41] 2026-01-11 04:54:38,426 | INFO     | job 6963375730 has completed (purged errors)
[2026-01-11 04:55:41] 2026-01-11 04:54:38,427 | INFO     | overall cleanup function is called
[2026-01-11 04:55:41] 2026-01-11 04:54:39,480 | INFO     | --- collectZombieJob: --- 10, [12715]
[2026-01-11 04:55:41] 2026-01-11 04:54:39,480 | INFO     | zombie collector waiting for pid 12715
[2026-01-11 04:55:41] 2026-01-11 04:54:39,481 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 04:55:41] 2026-01-11 04:54:39,481 | INFO     | collected zombie processes
[2026-01-11 04:55:41] 2026-01-11 04:54:39,481 | INFO     | will attempt to kill all subprocesses of pid=12715
[2026-01-11 04:55:41] 2026-01-11 04:54:41,121 | INFO     | PID=5428 has CPU usage=14.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 04:55:41] 2026-01-11 04:54:41,121 | INFO     | .. there are 12 such processes running
[2026-01-11 04:55:41] 2026-01-11 04:54:41,238 | INFO     | process IDs to be killed: [12715] (in reverse order)
[2026-01-11 04:55:41] 2026-01-11 04:54:41,768 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 04:55:41] 2026-01-11 04:54:41,768 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 04:55:41] 2026-01-11 04:54:41,795 | INFO     | did not find any defunct processes belonging to 12715
[2026-01-11 04:55:41] 2026-01-11 04:54:41,825 | INFO     | did not find any defunct processes belonging to 12715
[2026-01-11 04:55:41] 2026-01-11 04:54:41,826 | INFO     | ready for new job
[2026-01-11 04:55:41] 2026-01-11 04:54:41,826 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 04:55:41] 2026-01-11 04:54:41,834 | INFO     | ***************************************
[2026-01-11 04:55:41] 2026-01-11 04:54:41,835 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 04:55:41] 2026-01-11 04:54:41,835 | INFO     | ***************************************
[2026-01-11 04:55:41] 2026-01-11 04:54:41,839 | INFO     | 
[2026-01-11 04:55:41] 2026-01-11 04:54:41,860 | INFO     | architecture information:
[2026-01-11 04:55:41] 2026-01-11 04:54:41,863 | INFO     | executing command: cat /etc/os-release
[2026-01-11 04:55:41] 2026-01-11 04:54:41,914 | INFO     | cat /etc/os-release:
[2026-01-11 04:55:41] NAME="CentOS Linux"
[2026-01-11 04:55:41] VERSION="7 (Core)"
[2026-01-11 04:55:41] ID="centos"
[2026-01-11 04:55:41] ID_LIKE="rhel fedora"
[2026-01-11 04:55:41] VERSION_ID="7"
[2026-01-11 04:55:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 04:55:41] ANSI_COLOR="0;31"
[2026-01-11 04:55:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 04:55:41] HOME_URL="https://www.centos.org/"
[2026-01-11 04:55:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 04:55:41] 
[2026-01-11 04:55:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 04:55:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 04:55:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 04:55:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 04:55:41] 
[2026-01-11 04:55:41] 2026-01-11 04:54:41,914 | INFO     | ***************************************
[2026-01-11 04:55:41] 2026-01-11 04:54:42,417 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31421/slots/1
[2026-01-11 04:55:41] 2026-01-11 04:54:42,467 | INFO     | sufficient remaining disk space (367133720576 B)
[2026-01-11 04:55:41] 2026-01-11 04:54:42,467 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 04:55:41] 2026-01-11 04:54:42,468 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 04:55:41] 2026-01-11 04:54:42,468 | INFO     | update_server=False
[2026-01-11 04:55:41] 2026-01-11 04:54:42,468 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 04:55:41] 2026-01-11 04:54:42,468 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 04:55:41] 2026-01-11 04:54:42,678 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 04:55:41] 2026-01-11 04:54:42,679 | INFO     | aborting loop
[2026-01-11 04:55:41] 2026-01-11 04:54:42,882 | INFO     | all data control threads have been joined
[2026-01-11 04:55:41] 2026-01-11 04:54:43,311 | INFO     | all job control threads have been joined
[2026-01-11 04:55:41] 2026-01-11 04:54:43,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 04:55:41] 2026-01-11 04:54:43,475 | INFO     | [job] retrieve thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:43,482 | INFO     | [payload] validate_post thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:43,567 | INFO     | all payload control threads have been joined
[2026-01-11 04:55:41] 2026-01-11 04:54:43,570 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 04:55:41] 2026-01-11 04:54:43,595 | INFO     | [data] copytool_in thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:43,683 | INFO     | [job] job monitor thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:43,887 | INFO     | [data] control thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:43,983 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:44,319 | INFO     | [job] control thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:44,387 | INFO     | [job] queue monitor thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:44,487 | INFO     | [data] copytool_out thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:44,493 | INFO     | [job] validate thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:44,523 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:44,572 | INFO     | [payload] control thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:44,600 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:44,979 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:45,065 | INFO     | [payload] failed_post thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:54:47,592 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 04:55:41] 2026-01-11 04:55:14,857 | INFO     | PID=5428 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 04:55:41] 2026-01-11 04:55:14,857 | INFO     | .. there are 12 such processes running
[2026-01-11 04:55:41] 2026-01-11 04:55:14,857 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 04:55:41] 2026-01-11 04:55:14,858 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 04:55:41] 2026-01-11 04:55:14,858 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 04:55:41] 2026-01-11 04:55:33,905 | INFO     | [monitor] cgroup control has ended
[2026-01-11 04:55:41] 2026-01-11 04:55:34,480 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131612178560832)>', '<ExcThread(monitor, started 131611345544960)>']
[2026-01-11 04:55:41] 2026-01-11 04:55:35,019 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 04:55:41] 2026-01-11 04:55:35,020 | INFO     | [monitor] control thread has ended
[2026-01-11 04:55:41] 2026-01-11 04:55:39,506 | INFO     | all workflow threads have been joined
[2026-01-11 04:55:41] 2026-01-11 04:55:39,506 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 04:55:41] 2026-01-11 04:55:39,507 | INFO     | traces error code: 0
[2026-01-11 04:55:41] 2026-01-11 04:55:39,507 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 04:55:41] 2026-01-11 04:55:40,657 [wrapper] ==== pilot stdout END ====
[2026-01-11 04:55:41] 2026-01-11 04:55:40,665 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 04:55:41] 2026-01-11 04:55:40,672 [wrapper] pilotpid: 5428
[2026-01-11 04:55:41] 2026-01-11 04:55:40,686 [wrapper] Pilot exit status: 0
[2026-01-11 04:55:41] 2026-01-11 04:55:40,736 [wrapper] pandaids: 6963375730
[2026-01-11 04:55:41] 2026-01-11 04:55:41,001 [wrapper] cleanup supervisor_pilot 1289448 5429
[2026-01-11 04:55:41] 2026-01-11 04:55:41,042 [wrapper] Test setup, not cleaning
[2026-01-11 04:55:41] 2026-01-11 04:55:41,060 [wrapper] apfmon messages muted
[2026-01-11 04:55:41] 2026-01-11 04:55:41,073 [wrapper] ==== wrapper stdout END ====
[2026-01-11 04:55:41] 2026-01-11 04:55:41,084 [wrapper] ==== wrapper stderr END ====
[2026-01-11 04:55:41]  *** Error codes and diagnostics ***
[2026-01-11 04:55:41]     "exeErrorCode": 0,
[2026-01-11 04:55:41]     "exeErrorDiag": "",
[2026-01-11 04:55:41]     "pilotErrorCode": 0,
[2026-01-11 04:55:41]     "pilotErrorDiag": "",
[2026-01-11 04:55:41]  *** Listing of results directory ***
[2026-01-11 04:55:41] total 1180116
[2026-01-11 04:55:41] -rw-r--r-- 1 boinc boinc    579449 Jan  9 07:13 pilot3.tar.gz
[2026-01-11 04:55:41] -rwx------ 1 boinc boinc     36322 Jan  9 07:14 runpilot2-wrapper.sh
[2026-01-11 04:55:41] -rw-r--r-- 1 boinc boinc      5112 Jan  9 07:16 queuedata.json
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc       100 Jan 10 17:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 04:55:41] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 17:08 run_atlas
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc       105 Jan 10 17:08 job.xml
[2026-01-11 04:55:41] -rw-r--r-- 2 boinc boinc 392040655 Jan 10 17:08 EVNT.47962006._000072.pool.root.1
[2026-01-11 04:55:41] -rw-r--r-- 2 boinc boinc     15847 Jan 10 17:08 start_atlas.sh
[2026-01-11 04:55:41] drwxrwx--x 2 boinc boinc      4096 Jan 10 17:08 shared
[2026-01-11 04:55:41] -rw-r--r-- 2 boinc boinc    592614 Jan 10 17:08 input.tar.gz
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc         0 Jan 10 17:08 boinc_setup_complete
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc      6557 Jan 10 17:08 init_data.xml
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc         0 Jan 10 17:08 boinc_lockfile
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc      2891 Jan 10 17:08 pandaJob.out
[2026-01-11 04:55:41] -rw------- 1 boinc boinc    989556 Jan 10 17:09 agis_schedconf.cvmfs.json
[2026-01-11 04:55:41] drwx------ 5 boinc boinc      4096 Jan 10 17:09 pilot3
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc       533 Jan 11 04:34 boinc_task_state.xml
[2026-01-11 04:55:41] -rw------- 1 boinc boinc 796236241 Jan 11 04:53 HITS.47962010._000927.pool.root.1
[2026-01-11 04:55:41] -rw------- 1 boinc boinc      1034 Jan 11 04:54 memory_monitor_summary.json
[2026-01-11 04:55:41] -rw------- 1 boinc boinc   1516240 Jan 11 04:54 agis_ddmendpoints.agis.ALL.json
[2026-01-11 04:55:41] -rw------- 1 boinc boinc   2356876 Jan 11 04:54 log.47962010._000927.job.log.tgz.1
[2026-01-11 04:55:41] -rw------- 1 boinc boinc        95 Jan 11 04:54 pilot_heartbeat.json
[2026-01-11 04:55:41] -rw------- 1 boinc boinc      8546 Jan 11 04:54 heartbeat.json
[2026-01-11 04:55:41] -rw------- 1 boinc boinc      4845 Jan 11 04:55 pilotlog.txt
[2026-01-11 04:55:41] -rw------- 1 boinc boinc   5759755 Jan 11 04:55 log.47962010._000927.job.log.1
[2026-01-11 04:55:41] -rw------- 1 boinc boinc       353 Jan 11 04:55 output.list
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc       620 Jan 11 04:55 runtime_log
[2026-01-11 04:55:41] -rw------- 1 boinc boinc   8140800 Jan 11 04:55 result.tar.gz
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc      9168 Jan 11 04:55 runtime_log.err
[2026-01-11 04:55:41] -rw------- 1 boinc boinc       660 Jan 11 04:55 IB0NDm6sLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwVmKDm9wJs9m.diag
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc        29 Jan 11 04:55 wrapper_checkpoint.txt
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc      8192 Jan 11 04:55 boinc_mmap_file
[2026-01-11 04:55:41] -rw-rw-r-- 1 boinc boinc     20893 Jan 11 04:55 stderr.txt
[2026-01-11 04:55:41] HITS file was successfully produced:
[2026-01-11 04:55:41] -rw------- 1 boinc boinc 796236241 Jan 11 04:53 shared/HITS.pool.root.1
[2026-01-11 04:55:41]  *** Contents of shared directory: ***
[2026-01-11 04:55:41] total 1168988
[2026-01-11 04:55:41] -rw-r--r-- 2 boinc boinc 392040655 Jan 10 17:08 ATLAS.root_0
[2026-01-11 04:55:41] -rw-r--r-- 2 boinc boinc     15847 Jan 10 17:08 start_atlas.sh
[2026-01-11 04:55:41] -rw-r--r-- 2 boinc boinc    592614 Jan 10 17:08 input.tar.gz
[2026-01-11 04:55:41] -rw------- 1 boinc boinc 796236241 Jan 11 04:53 HITS.pool.root.1
[2026-01-11 04:55:41] -rw------- 1 boinc boinc   8140800 Jan 11 04:55 result.tar.gz
04:55:43 (955): run_atlas exited; CPU time 277914.259266
04:55:43 (955): called boinc_finish(0)

</stderr_txt>
]]>

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