Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:52:36 (1736509): wrapper (7.7.26015): starting
16:52:36 (1736509): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:52:36] Arguments: --nthreads 8
[2026-01-09 16:52:36] Threads: 8
[2026-01-09 16:52:36] Checking for CVMFS
[2026-01-09 16:52:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:52:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:52:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:52:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:52:37] 2.13.3.0 12210 22842 146708 154957 0 555 34136979 40960001 30504 16776704 0 74082765 99.803 36869048 47429 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 16:52:37] CVMFS is ok
[2026-01-09 16:52:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:52:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:52:37] Further information can be found at the LHC@home message board.
[2026-01-09 16:52:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:52:37] Checking for apptainer binary...
[2026-01-09 16:52:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:52:37] Running /usr/bin/apptainer --version
[2026-01-09 16:52:37] apptainer version 1.4.5-2.el9
[2026-01-09 16:52:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:52:37] c-208-37.aglt2.org
[2026-01-09 16:52:37] apptainer works
[2026-01-09 16:52:37] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:52:37] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:52:37] Starting ATLAS job with PandaID=6963899302
[2026-01-09 16:52:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:48:30]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:48:30] 2026-01-09 23:47:48,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 18:48:30] 2026-01-09 23:47:49,870 | INFO     | time since job start (6895s) is within the limit (349056.0s)
[2026-01-09 18:48:30] 2026-01-09 23:47:51,435 | INFO     | monitor loop #435: job 0:6963899302 is in state 'finished'
[2026-01-09 18:48:30] 2026-01-09 23:47:51,435 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 18:48:30] 2026-01-09 23:47:51,878 | INFO     | time since job start (6897s) is within the limit (349056.0s)
[2026-01-09 18:48:30] 2026-01-09 23:47:51,878 | INFO     | 6900s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-01-09 18:48:30] 2026-01-09 23:47:53,894 | INFO     | time since job start (6899s) is within the limit (349056.0s)
[2026-01-09 18:48:30] 2026-01-09 23:47:53,948 | INFO     | monitor loop #436: job 0:6963899302 is in state 'finished'
[2026-01-09 18:48:30] 2026-01-09 23:47:53,948 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 18:48:30] 2026-01-09 23:47:55,285 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 18:48:30] 2026-01-09 23:47:55,310 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3786.6596484375004
[2026-01-09 18:48:30] 2026-01-09 23:47:55,385 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963899302/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 18:48:30] 2026-01-09 23:47:55,386 | INFO     | extracted standard info from prmon json
[2026-01-09 18:48:30] 2026-01-09 23:47:55,386 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 18:48:30] 2026-01-09 23:47:55,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 18:48:30] 2026-01-09 23:47:55,400 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 18:48:30] 2026-01-09 23:47:55,400 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 18:48:30] 2026-01-09 23:47:55,402 | INFO     | fitting pss+swap vs Time
[2026-01-09 18:48:30] 2026-01-09 23:47:55,402 | INFO     | sum of square deviations: 435612052.91964203
[2026-01-09 18:48:30] 2026-01-09 23:47:55,402 | INFO     | sum of deviations: -5943320184.401786
[2026-01-09 18:48:30] 2026-01-09 23:47:55,402 | INFO     | mean x: 1767998991.5982144
[2026-01-09 18:48:30] 2026-01-09 23:47:55,402 | INFO     | mean y: 2551833.9910714286
[2026-01-09 18:48:30] 2026-01-09 23:47:55,402 | INFO     | intersect: 24124437402.446766
[2026-01-09 18:48:30] 2026-01-09 23:47:55,403 | INFO     | chi2: 1.4138217174211298
[2026-01-09 18:48:30] 2026-01-09 23:47:55,403 | INFO     | sum of square deviations: 379816995.4018699
[2026-01-09 18:48:30] 2026-01-09 23:47:55,403 | INFO     | sum of deviations: -5537378753.317757
[2026-01-09 18:48:30] 2026-01-09 23:47:55,403 | INFO     | mean x: 1767998839.0747664
[2026-01-09 18:48:30] 2026-01-09 23:47:55,403 | INFO     | mean y: 2552944.2897196263
[2026-01-09 18:48:30] 2026-01-09 23:47:55,403 | INFO     | intersect: 25778332664.269238
[2026-01-09 18:48:30] 2026-01-09 23:47:55,403 | INFO     | chi2: 1.4113528448278914
[2026-01-09 18:48:30] 2026-01-09 23:47:55,403 | INFO     | current chi2=1.4113528448278914 (change=0.17462403942569196 %)
[2026-01-09 18:48:30] 2026-01-09 23:47:55,403 | INFO     | right removable region: 106
[2026-01-09 18:48:30] 2026-01-09 23:47:55,404 | INFO     | sum of square deviations: 379830907.8691581
[2026-01-09 18:48:30] 2026-01-09 23:47:55,417 | INFO     | sum of deviations: -17650522600.598137
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | mean x: 1767999144.1028037
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | mean y: 2582775.3271028036
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | intersect: 82160480419.54514
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | chi2: 0.1908222577776315
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | current chi2=0.1908222577776315 (change=86.5030890793148 %)
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | sum of square deviations: 329033370.51960725
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | sum of deviations: -12639420765.450975
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | mean x: 1767999296.5980392
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | mean y: 2567696.745098039
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | intersect: 67918131967.428505
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | chi2: 0.16971051176140411
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | current chi2=0.16971051176140411 (change=11.063565782158012 %)
[2026-01-09 18:48:30] 2026-01-09 23:47:55,418 | INFO     | left removable region: 20
[2026-01-09 18:48:30] 2026-01-09 23:47:55,430 | INFO     | sum of square deviations: 197191991.08139488
[2026-01-09 18:48:30] 2026-01-09 23:47:55,430 | INFO     | sum of deviations: -1396600939.825581
[2026-01-09 18:48:30] 2026-01-09 23:47:55,430 | INFO     | mean x: 1767999418.5697675
[2026-01-09 18:48:30] 2026-01-09 23:47:55,430 | INFO     | mean y: 2528446.2209302327
[2026-01-09 18:48:30] 2026-01-09 23:47:55,430 | INFO     | intersect: 12524282682.002298
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | chi2: 0.032927938359768864
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | current memory leak: -7.08 B/s (using 86 data points, chi2=0.03)
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | could have reported an average CPU frequency of 3791 MHz (7 samples)
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | ..............................
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | . Timing measurements:
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | . get job = 0 s
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | . initial setup = 2 s
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | . payload setup = 8 s
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | . stage-in = 0 s
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | . payload execution = 6834 s
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | . stage-out = 3 s
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | . log creation = 0 s
[2026-01-09 18:48:30] 2026-01-09 23:47:55,431 | INFO     | ..............................
[2026-01-09 18:48:30] 2026-01-09 23:47:55,510 | INFO     | 
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | job summary report
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | --------------------------------------------------
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | PanDA job id: 6963899302
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | task id: 47898826
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | errors: (none)
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | pilot state: finished 
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | transexitcode: 0
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | exeerrorcode: 0
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | exeerrordiag: 
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | exitcode: 0
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | exitmsg: OK
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | cpuconsumptiontime: 32514 s
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | nevents: 400
[2026-01-09 18:48:30] 2026-01-09 23:47:55,513 | INFO     | neventsw: 0
[2026-01-09 18:48:30] 2026-01-09 23:47:55,514 | INFO     | pid: 1754538
[2026-01-09 18:48:30] 2026-01-09 23:47:55,514 | INFO     | pgrp: 1754538
[2026-01-09 18:48:30] 2026-01-09 23:47:55,514 | INFO     | corecount: 8
[2026-01-09 18:48:30] 2026-01-09 23:47:55,514 | INFO     | event service: False
[2026-01-09 18:48:30] 2026-01-09 23:47:55,514 | INFO     | sizes: {0: 2283919, 7: 2284181, 11: 2284209, 6847: 2311338, 6852: 2320336, 6853: 2320420, 6885: 2320742}
[2026-01-09 18:48:30] 2026-01-09 23:47:55,514 | INFO     | --------------------------------------------------
[2026-01-09 18:48:30] 2026-01-09 23:47:55,514 | INFO     | 
[2026-01-09 18:48:30] 2026-01-09 23:47:55,526 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 18:48:30] 2026-01-09 23:47:55,713 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,714 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,714 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,714 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,714 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,714 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,715 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | job 6963899302 has completed (purged errors)
[2026-01-09 18:48:30] 2026-01-09 23:47:55,716 | INFO     | overall cleanup function is called
[2026-01-09 18:48:30] 2026-01-09 23:47:56,736 | INFO     | --- collectZombieJob: --- 10, [1754538]
[2026-01-09 18:48:30] 2026-01-09 23:47:56,736 | INFO     | zombie collector waiting for pid 1754538
[2026-01-09 18:48:30] 2026-01-09 23:47:56,736 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 18:48:30] 2026-01-09 23:47:56,736 | INFO     | collected zombie processes
[2026-01-09 18:48:30] 2026-01-09 23:47:56,736 | INFO     | will attempt to kill all subprocesses of pid=1754538
[2026-01-09 18:48:30] 2026-01-09 23:47:58,850 | INFO     | process IDs to be killed: [1754538] (in reverse order)
[2026-01-09 18:48:30] 2026-01-09 23:47:59,053 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:48:30] 2026-01-09 23:47:59,053 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:48:30] 2026-01-09 23:47:59,188 | INFO     | did not find any defunct processes belonging to 1754538
[2026-01-09 18:48:30] 2026-01-09 23:47:59,234 | INFO     | did not find any defunct processes belonging to 1754538
[2026-01-09 18:48:30] 2026-01-09 23:47:59,234 | INFO     | ready for new job
[2026-01-09 18:48:30] 2026-01-09 23:47:59,234 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:48:30] 2026-01-09 23:47:59,249 | INFO     | ***************************************
[2026-01-09 18:48:30] 2026-01-09 23:47:59,249 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:48:30] 2026-01-09 23:47:59,249 | INFO     | ***************************************
[2026-01-09 18:48:30] 2026-01-09 23:47:59,249 | INFO     | 
[2026-01-09 18:48:30] 2026-01-09 23:47:59,266 | INFO     | architecture information:
[2026-01-09 18:48:30] 2026-01-09 23:47:59,267 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:48:30] 2026-01-09 23:47:59,328 | INFO     | cat /etc/os-release:
[2026-01-09 18:48:30] NAME="CentOS Linux"
[2026-01-09 18:48:30] VERSION="7 (Core)"
[2026-01-09 18:48:30] ID="centos"
[2026-01-09 18:48:30] ID_LIKE="rhel fedora"
[2026-01-09 18:48:30] VERSION_ID="7"
[2026-01-09 18:48:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:48:30] ANSI_COLOR="0;31"
[2026-01-09 18:48:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:48:30] HOME_URL="https://www.centos.org/"
[2026-01-09 18:48:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:48:30] 
[2026-01-09 18:48:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:48:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:48:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:48:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:48:30] 
[2026-01-09 18:48:30] 2026-01-09 23:47:59,329 | INFO     | ***************************************
[2026-01-09 18:48:30] 2026-01-09 23:47:59,833 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 18:48:30] 2026-01-09 23:47:59,883 | INFO     | sufficient remaining disk space (167501627392 B)
[2026-01-09 18:48:30] 2026-01-09 23:47:59,883 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:48:30] 2026-01-09 23:47:59,883 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:48:30] 2026-01-09 23:47:59,883 | INFO     | update_server=False
[2026-01-09 18:48:30] 2026-01-09 23:47:59,883 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:48:30] 2026-01-09 23:47:59,979 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:48:30] 2026-01-09 23:47:59,979 | INFO     | aborting loop
[2026-01-09 18:48:30] 2026-01-09 23:48:00,210 | INFO     | all job control threads have been joined
[2026-01-09 18:48:30] 2026-01-09 23:48:00,505 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:48:30] 2026-01-09 23:48:00,515 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:48:30] 2026-01-09 23:48:00,889 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:00,971 | INFO     | all data control threads have been joined
[2026-01-09 18:48:30] 2026-01-09 23:48:00,984 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:00,985 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:00,993 | INFO     | all payload control threads have been joined
[2026-01-09 18:48:30] 2026-01-09 23:48:01,028 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:01,038 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:01,069 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:01,090 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:48:30] 2026-01-09 23:48:01,216 | INFO     | [job] control thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:01,227 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:01,231 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:01,324 | INFO     | [job] validate thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:01,521 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:01,839 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:01,977 | INFO     | [data] control thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:01,999 | INFO     | [payload] control thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:02,516 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:05,098 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:48:30] 2026-01-09 23:48:05,656 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:48:30] 2026-01-09 23:48:06,673 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140188483127104)>', '<ExcThread(monitor, started 140188118406912)>']
[2026-01-09 18:48:30] 2026-01-09 23:48:11,699 | INFO     | all workflow threads have been joined
[2026-01-09 18:48:30] 2026-01-09 23:48:11,699 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:48:30] 2026-01-09 23:48:11,699 | INFO     | traces error code: 0
[2026-01-09 18:48:30] 2026-01-09 23:48:11,699 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:48:30] 2026-01-09 23:48:28,264 | INFO     | PID=1741603 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 18:48:30] 2026-01-09 23:48:28,264 | INFO     | .. there are 34 such processes running
[2026-01-09 18:48:30] 2026-01-09 23:48:28,265 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:48:30] 2026-01-09 23:48:28,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:48:30] 2026-01-09 23:48:28,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:48:30] 2026-01-09 23:48:28,265 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:48:30] 2026-01-09 23:48:28,265 | INFO     | [monitor] control thread has ended
[2026-01-09 18:48:30] 2026-01-09 23:48:28,895 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:48:30] 2026-01-09 23:48:28,909 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:48:30] 2026-01-09 23:48:28,968 [wrapper] pilotpid: 1741603
[2026-01-09 18:48:30] 2026-01-09 23:48:29,003 [wrapper] Pilot exit status: 0
[2026-01-09 18:48:30] 2026-01-09 23:48:29,130 [wrapper] pandaids: 6963899302
[2026-01-09 18:48:30] 2026-01-09 23:48:29,385 [wrapper] cleanup supervisor_pilot 2345811 1741604
[2026-01-09 18:48:30] 2026-01-09 23:48:29,421 [wrapper] Test setup, not cleaning
[2026-01-09 18:48:30] 2026-01-09 23:48:29,451 [wrapper] apfmon messages muted
[2026-01-09 18:48:30] 2026-01-09 23:48:29,495 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:48:30] 2026-01-09 23:48:29,525 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:48:30]  *** Error codes and diagnostics ***
[2026-01-09 18:48:30]     "exeErrorCode": 0,
[2026-01-09 18:48:30]     "exeErrorDiag": "",
[2026-01-09 18:48:30]     "pilotErrorCode": 0,
[2026-01-09 18:48:30]     "pilotErrorDiag": "",
[2026-01-09 18:48:30]  *** Listing of results directory ***
[2026-01-09 18:48:30] total 444384
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 02:13 pilot3.tar.gz
[2026-01-09 18:48:30] -rwx------. 1 boincer umatlas     36322 Jan  9 02:14 runpilot2-wrapper.sh
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 02:16 queuedata.json
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas       100 Jan  9 16:52 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:48:30] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 16:52 run_atlas
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas       105 Jan  9 16:52 job.xml
[2026-01-09 18:48:30] -rw-r--r--. 2 boincer umatlas 225761808 Jan  9 16:52 EVNT.47898824._000781.pool.root.1
[2026-01-09 18:48:30] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:52 start_atlas.sh
[2026-01-09 18:48:30] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 16:52 shared
[2026-01-09 18:48:30] -rw-r--r--. 2 boincer umatlas    592400 Jan  9 16:52 input.tar.gz
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas         0 Jan  9 16:52 boinc_lockfile
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 16:52 pandaJob.out
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas        57 Jan  9 16:52 setup.sh.local
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas    989398 Jan  9 16:52 agis_schedconf.cvmfs.json
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas   1516240 Jan  9 16:52 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:48:30] drwx------. 5 boincer umatlas      4096 Jan  9 16:52 pilot3
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas      7184 Jan  9 18:36 init_data.xml
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas 222809396 Jan  9 18:46 HITS.47898826._039863.pool.root.1
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas       529 Jan  9 18:46 boinc_task_state.xml
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas      1047 Jan  9 18:47 memory_monitor_summary.json
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas    369713 Jan  9 18:47 log.47898826._039863.job.log.tgz.1
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas      7789 Jan  9 18:47 heartbeat.json
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 18:48 boinc_mmap_file
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas        27 Jan  9 18:48 wrapper_checkpoint.txt
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas        95 Jan  9 18:48 pilot_heartbeat.json
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas       823 Jan  9 18:48 pilotlog.txt
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas    910237 Jan  9 18:48 log.47898826._039863.job.log.1
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas       357 Jan  9 18:48 output.list
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas       620 Jan  9 18:48 runtime_log
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas   1300480 Jan  9 18:48 result.tar.gz
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas      9342 Jan  9 18:48 runtime_log.err
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas       656 Jan  9 18:48 jpuKDm6sLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm7UmKDmg5Cgzn.diag
[2026-01-09 18:48:30] -rw-r--r--. 1 boincer umatlas     21422 Jan  9 18:48 stderr.txt
[2026-01-09 18:48:30] HITS file was successfully produced:
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas 222809396 Jan  9 18:46 shared/HITS.pool.root.1
[2026-01-09 18:48:30]  *** Contents of shared directory: ***
[2026-01-09 18:48:30] total 439936
[2026-01-09 18:48:30] -rw-r--r--. 2 boincer umatlas 225761808 Jan  9 16:52 ATLAS.root_0
[2026-01-09 18:48:30] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:52 start_atlas.sh
[2026-01-09 18:48:30] -rw-r--r--. 2 boincer umatlas    592400 Jan  9 16:52 input.tar.gz
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas 222809396 Jan  9 18:46 HITS.pool.root.1
[2026-01-09 18:48:30] -rw-------. 1 boincer umatlas   1300480 Jan  9 18:48 result.tar.gz
18:48:32 (1736509): run_atlas exited; CPU time 32689.613622
18:48:32 (1736509): called boinc_finish(0)

</stderr_txt>
]]>

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