Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-10 09:10:06 (27956): vboxwrapper version 26210
2026-01-10 09:10:06 (27956): BOINC client version: 8.2.8
2026-01-10 09:10:07 (27956): Detected: VirtualBox VboxManage Interface (Version: 7.2.4)
2026-01-10 09:10:07 (27956): Successfully copied 'init_data.xml' to the shared directory.
2026-01-10 09:10:07 (27956): Create VM. (boinc_2a3c1953def4da74, slot#10)
2026-01-10 09:10:08 (27956): Setting Memory Size for VM. (4400MB)
2026-01-10 09:10:08 (27956): Setting CPU Count for VM. (4)
2026-01-10 09:10:08 (27956): Setting Chipset Options for VM.
2026-01-10 09:10:08 (27956): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-10 09:10:09 (27956): Setting Boot Options for VM.
2026-01-10 09:10:09 (27956): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-10 09:10:09 (27956): Enabling VM Network Access.
2026-01-10 09:10:10 (27956): Disabling USB Support for VM.
2026-01-10 09:10:10 (27956): Disabling COM Port Support for VM.
2026-01-10 09:10:10 (27956): Disabling LPT Port Support for VM.
2026-01-10 09:10:10 (27956): Disabling Audio Support for VM.
2026-01-10 09:10:11 (27956): Disabling Clipboard Support for VM.
2026-01-10 09:10:11 (27956): Disabling Drag and Drop Support for VM.
2026-01-10 09:10:11 (27956): Adding storage controller(s) to VM.
2026-01-10 09:10:12 (27956): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-10 09:10:12 (27956): Adding VirtualBox Guest Additions to VM.
2026-01-10 09:10:12 (27956): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-10 09:10:13 (27956): forwarding host port 60547 to guest port 80
2026-01-10 09:10:13 (27956): Enabling remote desktop for VM.
2026-01-10 09:10:13 (27956): Enabling shared directory for VM.
2026-01-10 09:10:14 (27956): Starting VM using VBoxManage interface. (boinc_2a3c1953def4da74, slot#10)
2026-01-10 09:10:18 (27956): Successfully started VM. (PID = '24836')
2026-01-10 09:10:18 (27956): Reporting VM Process ID to BOINC.
2026-01-10 09:10:18 (27956): Guest Log: BIOS: VirtualBox 7.2.4
2026-01-10 09:10:18 (27956): Guest Log: CPUID EDX: 0x178bfbff
2026-01-10 09:10:18 (27956): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-10 09:10:18 (27956): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-10 09:10:18 (27956): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-10 09:10:18 (27956): Detected: Web Application Enabled (http://localhost:60547)
2026-01-10 09:10:18 (27956): Detected: Remote Desktop Enabled (localhost:60548)
2026-01-10 09:10:18 (27956): Preference change detected
2026-01-10 09:10:18 (27956): Setting CPU throttle for VM. (100%)
2026-01-10 09:10:19 (27956): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-10 09:10:20 (27956): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-10 09:10:20 (27956): Guest Log: BIOS: Booting from Hard Disk...
2026-01-10 09:10:23 (27956): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-10 09:10:23 (27956): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-10 09:10:23 (27956): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-10 09:10:28 (27956): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-10 09:10:28 (27956): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-01-10 09:10:33 (27956): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-10 09:10:33 (27956): Guest Log: 00:00:00.000076 main     Log opened 2026-01-10T09:10:31.177391000Z
2026-01-10 09:10:33 (27956): Guest Log: 00:00:00.000155 main     OS Product: Linux
2026-01-10 09:10:33 (27956): Guest Log: 00:00:00.000168 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-10 09:10:33 (27956): Guest Log: 00:00:00.000178 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-10 09:10:33 (27956): Guest Log: 00:00:00.000189 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-10 09:10:33 (27956): Guest Log: 00:00:00.000189 main     Process ID: 1305
2026-01-10 09:10:33 (27956): Guest Log: 00:00:00.000190 main     Package type: LINUX_64BITS_GENERIC
2026-01-10 09:10:33 (27956): Guest Log: 00:00:00.000907 main     5.2.32 r132073 started. Verbose level = 0
2026-01-10 09:10:33 (27956): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-10 09:10:33 (27956): Guest Log: [INFO] Mounting shared directory
2026-01-10 09:10:33 (27956): Guest Log: [INFO] Checking for init_data.xml
2026-01-10 09:10:37 (27956): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-10 09:10:37 (27956): Guest Log: [INFO] Detected branch: prod
2026-01-10 09:10:37 (27956): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-10 09:10:37 (27956): Guest Log: Copying input files
2026-01-10 09:10:39 (27956): Guest Log: Copied input files into RunAtlas.
2026-01-10 09:10:39 (27956): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-10 09:10:39 (27956): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-10 09:10:39 (27956): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-10 09:10:39 (27956): Guest Log: Further information can be found at the LHC@home message board.
2026-01-10 09:10:43 (27956): Guest Log: 00:00:10.018589 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 587 942 508 000ns (GuestNow=1 768 032 643 238 674 000 ns GuestLast=1 768 036 231 181 182 000 ns fSetTimeLastLoop=true )
2026-01-10 09:10:47 (27956): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-10 09:10:47 (27956): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-10 09:10:47 (27956): Guest Log: 2.6.3.0 1583 0 32208 154972 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-01-10 09:10:49 (27956): Guest Log: copied the webapp to /var/www
2026-01-10 09:10:49 (27956): Guest Log: ATHENA_PROC_NUMBER=4
2026-01-10 09:10:49 (27956): Guest Log: ATHENA_CORE_NUMBER=4
2026-01-10 09:10:49 (27956): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-10 09:10:49 (27956): Guest Log:  *** Starting ATLAS job. (PandaID=6963381809 taskID=47962010) ***
2026-01-10 10:50:29 (27956): Status Report: Elapsed Time: '6000.000000'
2026-01-10 10:50:29 (27956): Status Report: CPU Time: '21518.250000'
2026-01-10 12:30:36 (27956): Status Report: Elapsed Time: '12000.000000'
2026-01-10 12:30:36 (27956): Status Report: CPU Time: '45306.093750'
2026-01-10 14:10:52 (27956): Status Report: Elapsed Time: '18000.000000'
2026-01-10 14:10:52 (27956): Status Report: CPU Time: '69092.812500'
2026-01-10 15:50:54 (27956): Status Report: Elapsed Time: '24000.000000'
2026-01-10 15:50:54 (27956): Status Report: CPU Time: '92905.921875'
2026-01-10 16:04:36 (27956): Preference change detected
2026-01-10 16:04:36 (27956): Setting CPU throttle for VM. (90%)
2026-01-10 16:04:38 (27956): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 900 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-10 16:23:16 (27956): Guest Log:  *** Job finished ***
2026-01-10 16:23:16 (27956): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:07,642 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:07,642 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:26,946 | INFO     | [monitor] cgroup control has ended
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:28,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139791936091968)>', '<ExcThread(monitor, started 139790825539328)>']
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:28,819 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:28,819 | INFO     | [monitor] control thread has ended
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,185 | INFO     | all workflow threads have been joined
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,185 | INFO     | end of generic workflow (traces error code: 0)
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,185 | INFO     | traces error code: 0
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,185 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,226 [wrapper] ==== pilot stdout END ====
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,230 [wrapper] ==== wrapper stdout RESUME ====
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,233 [wrapper] pilotpid: 5984
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,237 [wrapper] Pilot exit status: 0
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,247 [wrapper] pandaids: 6963381809
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,266 [wrapper] cleanup supervisor_pilot   908 5985
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,269 [wrapper] Test setup, not cleaning
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,271 [wrapper] apfmon messages muted
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,274 [wrapper] ==== wrapper stdout END ====
2026-01-10 16:23:16 (27956): Guest Log: 2026-01-10 15:23:33,277 [wrapper] ==== wrapper stderr END ====
2026-01-10 16:23:16 (27956): Guest Log:  *** Error codes and diagnostics ***
2026-01-10 16:23:16 (27956): Guest Log:     "exeErrorCode": 0,
2026-01-10 16:23:16 (27956): Guest Log:     "exeErrorDiag": "",
2026-01-10 16:23:16 (27956): Guest Log:     "pilotErrorCode": 0,
2026-01-10 16:23:16 (27956): Guest Log:     "pilotErrorDiag": "",
2026-01-10 16:23:16 (27956): Guest Log:  *** Listing of results directory ***
2026-01-10 16:23:16 (27956): Guest Log: total 792324
2026-01-10 16:23:16 (27956): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Jan  9 07:13 pilot3.tar.gz
2026-01-10 16:23:16 (27956): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jan  9 07:13 queuedata.json
2026-01-10 16:23:16 (27956): Guest Log: -rwx------. 1 atlas atlas     36322 Jan  9 07:14 runpilot2-wrapper.sh
2026-01-10 16:23:16 (27956): Guest Log: -rwxr-xr-x. 1 atlas atlas      8641 Jan 10 08:10 init_data.xml
2026-01-10 16:23:16 (27956): Guest Log: -rwxr-xr-x. 1 atlas atlas    592619 Jan 10 08:10 input.tar.gz
2026-01-10 16:23:16 (27956): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Jan 10 08:10 start_atlas.sh
2026-01-10 16:23:16 (27956): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 10 08:10 EVNT.47962006._000122.pool.root.1 -> /data/./ATLAS.root_0
2026-01-10 16:23:16 (27956): Guest Log: -rw-r--r--. 1 atlas atlas      2893 Jan 10 08:10 pandaJob.out
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas    989374 Jan 10 08:11 agis_schedconf.cvmfs.json
2026-01-10 16:23:16 (27956): Guest Log: drwx------. 5 atlas atlas      4096 Jan 10 08:12 pilot3
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas 798107090 Jan 10 15:22 HITS.47962010._001757.pool.root.1
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas      1034 Jan 10 15:22 memory_monitor_summary.json
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas   1516240 Jan 10 15:22 agis_ddmendpoints.agis.ALL.json
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas   1229529 Jan 10 15:22 log.47962010._001757.job.log.tgz.1
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas        95 Jan 10 15:22 pilot_heartbeat.json
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas      8618 Jan 10 15:22 heartbeat.json
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas      4877 Jan 10 15:23 pilotlog.txt
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas   3463570 Jan 10 15:23 log.47962010._001757.job.log.1
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas       353 Jan 10 15:23 output.list
2026-01-10 16:23:16 (27956): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 10 15:23 runtime_log
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas   4710400 Jan 10 15:23 result.tar.gz
2026-01-10 16:23:16 (27956): Guest Log: -rw-r--r--. 1 atlas atlas      8738 Jan 10 15:23 runtime_log.err
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas       655 Jan 10 15:23 iMiMDmTsLy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaTmKDmVNlOTn.diag
2026-01-10 16:23:16 (27956): Guest Log: Looking for outputfile HITS.47962010._001757.pool.root.1
2026-01-10 16:23:16 (27956): Guest Log: HITS file was successfully produced
2026-01-10 16:23:16 (27956): Guest Log: -rw-------. 1 atlas atlas 798107090 Jan 10 15:22 /home/atlas/RunAtlas/HITS.47962010._001757.pool.root.1
2026-01-10 16:23:19 (27956): Guest Log: Successfully finished the ATLAS job!
2026-01-10 16:23:19 (27956): Guest Log: Copying the results back to the shared directory!
2026-01-10 16:23:19 (27956): Guest Log:  *** Contents of shared directory: ***
2026-01-10 16:23:19 (27956): Guest Log: total 1167668
2026-01-10 16:23:19 (27956): Guest Log: -rwxrwxrwx. 1 root root 392245836 Jan 10 08:10 ATLAS.root_0
2026-01-10 16:23:19 (27956): Guest Log: -rwxrwxrwx. 1 root root 798107090 Jan 10 15:23 HITS.pool.root.1
2026-01-10 16:23:19 (27956): Guest Log: -rwxrwxrwx. 1 root root      8641 Jan 10 08:10 init_data.xml
2026-01-10 16:23:19 (27956): Guest Log: -rwxrwxrwx. 1 root root    592619 Jan  9 21:40 input.tar.gz
2026-01-10 16:23:19 (27956): Guest Log: -rwxrwxrwx. 1 root root   4710400 Jan 10 15:23 result.tar.gz
2026-01-10 16:23:19 (27956): Guest Log: -rwxrwxrwx. 1 root root     15847 Jan  9 21:40 start_atlas.sh
2026-01-10 16:23:19 (27956): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-10 16:23:19 (27956): VM Completion File Detected.
2026-01-10 16:23:19 (27956): Powering off VM.
2026-01-10 16:23:19 (27956): Successfully stopped VM.
2026-01-10 16:23:19 (27956): Deregistering VM. (boinc_2a3c1953def4da74, slot#10)
2026-01-10 16:23:19 (27956): Removing network bandwidth throttle group from VM.
2026-01-10 16:23:20 (27956): Removing VM from VirtualBox.
2026-01-10 16:23:25 (27956): called boinc_finish(0)

</stderr_txt>
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