Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:20:33 (2174365): wrapper (7.7.26015): starting
16:20:33 (2174365): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:20:33] Arguments: --nthreads 8
[2026-01-09 16:20:33] Threads: 8
[2026-01-09 16:20:33] Checking for CVMFS
[2026-01-09 16:20:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:20:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:20:34] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:20:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:20:35] 2.13.3.0 22787 93891 169016 154957 3 310 28536105 40960001 36965 16776704 0 1121169561 99.714 828502021 49857 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 16:20:35] CVMFS is ok
[2026-01-09 16:20:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:20:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:20:35] Further information can be found at the LHC@home message board.
[2026-01-09 16:20:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:20:35] Checking for apptainer binary...
[2026-01-09 16:20:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:20:35] Running /usr/bin/apptainer --version
[2026-01-09 16:20:35] apptainer version 1.4.5-2.el9
[2026-01-09 16:20:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:20:35] c8-6-11.aglt2.org
[2026-01-09 16:20:35] apptainer works
[2026-01-09 16:20:35] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:20:35] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:20:35] Starting ATLAS job with PandaID=6964539098
[2026-01-09 16:20:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:11:19]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:11:19] 2026-01-10 01:10:10,590 | INFO     | time since job start (13701s) is within the limit (349056.0s)
[2026-01-09 20:11:19] 2026-01-10 01:10:12,359 | INFO     | monitor loop #830: job 0:6964539098 is in state 'finished'
[2026-01-09 20:11:19] 2026-01-10 01:10:12,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:11:19] 2026-01-10 01:10:12,608 | INFO     | time since job start (13703s) is within the limit (349056.0s)
[2026-01-09 20:11:19] 2026-01-10 01:10:14,615 | INFO     | time since job start (13705s) is within the limit (349056.0s)
[2026-01-09 20:11:19] 2026-01-10 01:10:14,866 | INFO     | monitor loop #831: job 0:6964539098 is in state 'finished'
[2026-01-09 20:11:19] 2026-01-10 01:10:14,866 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:11:19] 2026-01-10 01:10:14,964 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 20:11:19] 2026-01-10 01:10:14,983 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1180156250016
[2026-01-09 20:11:19] 2026-01-10 01:10:14,995 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6964539098/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:11:19] 2026-01-10 01:10:14,996 | INFO     | extracted standard info from prmon json
[2026-01-09 20:11:19] 2026-01-10 01:10:14,996 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:11:19] 2026-01-10 01:10:14,996 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:11:19] 2026-01-10 01:10:14,996 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:11:19] 2026-01-10 01:10:14,996 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:11:19] 2026-01-10 01:10:14,998 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:11:19] 2026-01-10 01:10:14,998 | INFO     | sum of square deviations: 3392673913.8738728
[2026-01-09 20:11:19] 2026-01-10 01:10:14,999 | INFO     | sum of deviations: 36882313005.693756
[2026-01-09 20:11:19] 2026-01-10 01:10:14,999 | INFO     | mean x: 1768000593.5855856
[2026-01-09 20:11:19] 2026-01-10 01:10:14,999 | INFO     | mean y: 2483187.779279279
[2026-01-09 20:11:19] 2026-01-10 01:10:14,999 | INFO     | intersect: -19217740430.004025
[2026-01-09 20:11:19] 2026-01-10 01:10:15,000 | INFO     | chi2: 4.304691900909284
[2026-01-09 20:11:19] 2026-01-10 01:10:15,000 | INFO     | sum of square deviations: 3168573181.336403
[2026-01-09 20:11:19] 2026-01-10 01:10:15,000 | INFO     | sum of deviations: 50184822619.612885
[2026-01-09 20:11:19] 2026-01-10 01:10:15,000 | INFO     | mean x: 1768000441.0875576
[2026-01-09 20:11:19] 2026-01-10 01:10:15,000 | INFO     | mean y: 2492062.9677419355
[2026-01-09 20:11:19] 2026-01-10 01:10:15,001 | INFO     | intersect: -27999634903.83133
[2026-01-09 20:11:19] 2026-01-10 01:10:15,001 | INFO     | chi2: 3.618318074515361
[2026-01-09 20:11:19] 2026-01-10 01:10:15,001 | INFO     | current chi2=3.618318074515361 (change=15.944784021568182 %)
[2026-01-09 20:11:19] 2026-01-10 01:10:15,001 | INFO     | right removable region: 216
[2026-01-09 20:11:19] 2026-01-10 01:10:15,001 | INFO     | sum of square deviations: 3168561591.336403
[2026-01-09 20:11:19] 2026-01-10 01:10:15,002 | INFO     | sum of deviations: -27992611668.2166
[2026-01-09 20:11:19] 2026-01-10 01:10:15,002 | INFO     | mean x: 1768000746.0875576
[2026-01-09 20:11:19] 2026-01-10 01:10:15,002 | INFO     | mean y: 2527216.3271889403
[2026-01-09 20:11:19] 2026-01-10 01:10:15,002 | INFO     | intersect: 15621904302.026329
[2026-01-09 20:11:19] 2026-01-10 01:10:15,002 | INFO     | chi2: 0.9881137653958827
[2026-01-09 20:11:19] 2026-01-10 01:10:15,002 | INFO     | current chi2=0.9881137653958827 (change=77.04565650361266 %)
[2026-01-09 20:11:19] 2026-01-10 01:10:15,002 | INFO     | sum of square deviations: 2954542481.2971783
[2026-01-09 20:11:19] 2026-01-10 01:10:15,003 | INFO     | sum of deviations: -40571254369.24057
[2026-01-09 20:11:19] 2026-01-10 01:10:15,003 | INFO     | mean x: 1768000898.5896227
[2026-01-09 20:11:19] 2026-01-10 01:10:15,003 | INFO     | mean y: 2536131.617924528
[2026-01-09 20:11:19] 2026-01-10 01:10:15,003 | INFO     | intersect: 24280411516.99155
[2026-01-09 20:11:19] 2026-01-10 01:10:15,003 | INFO     | chi2: 0.8223272732784478
[2026-01-09 20:11:19] 2026-01-10 01:10:15,003 | INFO     | current chi2=0.8223272732784478 (change=16.778077375636336 %)
[2026-01-09 20:11:19] 2026-01-10 01:10:15,003 | INFO     | left removable region: 20
[2026-01-09 20:11:19] 2026-01-10 01:10:15,003 | INFO     | sum of square deviations: 2334825363.3469486
[2026-01-09 20:11:19] 2026-01-10 01:10:15,004 | INFO     | sum of deviations: -23328079731.18366
[2026-01-09 20:11:19] 2026-01-10 01:10:15,004 | INFO     | mean x: 1768001020.5918367
[2026-01-09 20:11:19] 2026-01-10 01:10:15,004 | INFO     | mean y: 2544506.7602040814
[2026-01-09 20:11:19] 2026-01-10 01:10:15,004 | INFO     | intersect: 17667278418.189663
[2026-01-09 20:11:19] 2026-01-10 01:10:15,004 | INFO     | chi2: 0.07710159471947721
[2026-01-09 20:11:19] 2026-01-10 01:10:15,004 | INFO     | current memory leak: -9.99 B/s (using 196 data points, chi2=0.08)
[2026-01-09 20:11:19] 2026-01-10 01:10:15,004 | INFO     | could have reported an average CPU frequency of 3800 MHz (11 samples)
[2026-01-09 20:11:19] 2026-01-10 01:10:15,004 | INFO     | ..............................
[2026-01-09 20:11:19] 2026-01-10 01:10:15,004 | INFO     | . Timing measurements:
[2026-01-09 20:11:19] 2026-01-10 01:10:15,004 | INFO     | . get job = 0 s
[2026-01-09 20:11:19] 2026-01-10 01:10:15,005 | INFO     | . initial setup = 6 s
[2026-01-09 20:11:19] 2026-01-10 01:10:15,005 | INFO     | . payload setup = 42 s
[2026-01-09 20:11:19] 2026-01-10 01:10:15,005 | INFO     | . stage-in = 0 s
[2026-01-09 20:11:19] 2026-01-10 01:10:15,005 | INFO     | . payload execution = 13543 s
[2026-01-09 20:11:19] 2026-01-10 01:10:15,005 | INFO     | . stage-out = 4 s
[2026-01-09 20:11:19] 2026-01-10 01:10:15,005 | INFO     | . log creation = 0 s
[2026-01-09 20:11:19] 2026-01-10 01:10:15,005 | INFO     | ..............................
[2026-01-09 20:11:19] 2026-01-10 01:10:15,109 | INFO     | 
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | job summary report
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | --------------------------------------------------
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | PanDA job id: 6964539098
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | task id: 47898826
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | errors: (none)
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | pilot state: finished 
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | transexitcode: 0
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | exeerrorcode: 0
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | exeerrordiag: 
[2026-01-09 20:11:19] 2026-01-10 01:10:15,113 | INFO     | exitcode: 0
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | exitmsg: OK
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | cpuconsumptiontime: 31194 s
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | nevents: 400
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | neventsw: 0
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | pid: 2198801
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | pgrp: 2198801
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | corecount: 8
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | event service: False
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | sizes: {0: 2283088, 1: 2283689, 2: 2283972, 3: 2284000, 14: 2284000, 24: 2284028, 34: 2284446, 35: 2284474, 13591: 2314613, 13597: 2323611, 13599: 2323695, 13639: 
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | --------------------------------------------------
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | 
[2026-01-09 20:11:19] 2026-01-10 01:10:15,114 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-09 20:11:19] 2026-01-10 01:10:15,204 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,204 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,204 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,204 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,204 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,204 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,204 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | job 6964539098 has completed (purged errors)
[2026-01-09 20:11:19] 2026-01-10 01:10:15,205 | INFO     | overall cleanup function is called
[2026-01-09 20:11:19] 2026-01-10 01:10:16,226 | INFO     | --- collectZombieJob: --- 10, [2198801]
[2026-01-09 20:11:19] 2026-01-10 01:10:16,226 | INFO     | zombie collector waiting for pid 2198801
[2026-01-09 20:11:19] 2026-01-10 01:10:16,226 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:11:19] 2026-01-10 01:10:16,226 | INFO     | collected zombie processes
[2026-01-09 20:11:19] 2026-01-10 01:10:16,226 | INFO     | will attempt to kill all subprocesses of pid=2198801
[2026-01-09 20:11:19] 2026-01-10 01:10:19,124 | INFO     | PID=2180306 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:11:19] 2026-01-10 01:10:19,124 | INFO     | .. there are 38 such processes running
[2026-01-09 20:11:19] 2026-01-10 01:10:19,223 | INFO     | process IDs to be killed: [2198801] (in reverse order)
[2026-01-09 20:11:19] 2026-01-10 01:10:20,212 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:11:19] 2026-01-10 01:10:20,212 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:11:19] 2026-01-10 01:10:20,258 | INFO     | did not find any defunct processes belonging to 2198801
[2026-01-09 20:11:19] 2026-01-10 01:10:20,303 | INFO     | did not find any defunct processes belonging to 2198801
[2026-01-09 20:11:19] 2026-01-10 01:10:20,303 | INFO     | ready for new job
[2026-01-09 20:11:19] 2026-01-10 01:10:20,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:11:19] 2026-01-10 01:10:20,312 | INFO     | ***************************************
[2026-01-09 20:11:19] 2026-01-10 01:10:20,313 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:11:19] 2026-01-10 01:10:20,313 | INFO     | ***************************************
[2026-01-09 20:11:19] 2026-01-10 01:10:20,313 | INFO     | 
[2026-01-09 20:11:19] 2026-01-10 01:10:20,325 | INFO     | architecture information:
[2026-01-09 20:11:19] 2026-01-10 01:10:20,333 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:11:19] 2026-01-10 01:10:20,425 | INFO     | cat /etc/os-release:
[2026-01-09 20:11:19] NAME="CentOS Linux"
[2026-01-09 20:11:19] VERSION="7 (Core)"
[2026-01-09 20:11:19] ID="centos"
[2026-01-09 20:11:19] ID_LIKE="rhel fedora"
[2026-01-09 20:11:19] VERSION_ID="7"
[2026-01-09 20:11:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:11:19] ANSI_COLOR="0;31"
[2026-01-09 20:11:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:11:19] HOME_URL="https://www.centos.org/"
[2026-01-09 20:11:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:11:19] 
[2026-01-09 20:11:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:11:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:11:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:11:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:11:19] 
[2026-01-09 20:11:19] 2026-01-10 01:10:20,425 | INFO     | ***************************************
[2026-01-09 20:11:19] 2026-01-10 01:10:20,929 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-09 20:11:19] 2026-01-10 01:10:20,979 | INFO     | sufficient remaining disk space (168993751040 B)
[2026-01-09 20:11:19] 2026-01-10 01:10:20,979 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:11:19] 2026-01-10 01:10:20,980 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:11:19] 2026-01-10 01:10:20,980 | INFO     | update_server=False
[2026-01-09 20:11:19] 2026-01-10 01:10:20,980 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:11:19] 2026-01-10 01:10:20,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:11:19] 2026-01-10 01:10:20,980 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:11:19] 2026-01-10 01:10:21,044 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:11:19] 2026-01-10 01:10:21,044 | INFO     | aborting loop
[2026-01-09 20:11:19] 2026-01-10 01:10:21,113 | INFO     | all job control threads have been joined
[2026-01-09 20:11:19] 2026-01-10 01:10:21,759 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:11:19] 2026-01-10 01:10:21,800 | INFO     | all data control threads have been joined
[2026-01-09 20:11:19] 2026-01-10 01:10:21,985 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:21,985 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:22,050 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:22,119 | INFO     | [job] control thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:22,195 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:22,349 | INFO     | all payload control threads have been joined
[2026-01-09 20:11:19] 2026-01-10 01:10:22,562 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:22,757 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:22,769 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:22,769 | INFO     | [job] validate thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:22,806 | INFO     | [data] control thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:22,988 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:23,074 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:23,215 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:23,263 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:23,355 | INFO     | [payload] control thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:25,768 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:11:19] 2026-01-10 01:10:52,487 | INFO     | PID=2180306 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:11:19] 2026-01-10 01:10:52,487 | INFO     | .. there are 38 such processes running
[2026-01-09 20:11:19] 2026-01-10 01:10:52,487 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:11:19] 2026-01-10 01:10:52,487 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:11:19] 2026-01-10 01:10:52,487 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:11:19] 2026-01-10 01:11:11,969 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:11:19] 2026-01-10 01:11:13,319 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139701332506432)>', '<ExcThread(monitor, started 139700824160000)>']
[2026-01-09 20:11:19] 2026-01-10 01:11:13,648 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:11:19] 2026-01-10 01:11:13,648 | INFO     | [monitor] control thread has ended
[2026-01-09 20:11:19] 2026-01-10 01:11:18,345 | INFO     | all workflow threads have been joined
[2026-01-09 20:11:19] 2026-01-10 01:11:18,360 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:11:19] 2026-01-10 01:11:18,361 | INFO     | traces error code: 0
[2026-01-09 20:11:19] 2026-01-10 01:11:18,361 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:11:19] 2026-01-10 01:11:18,804 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:11:19] 2026-01-10 01:11:18,806 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:11:19] 2026-01-10 01:11:18,808 [wrapper] pilotpid: 2180306
[2026-01-09 20:11:19] 2026-01-10 01:11:18,810 [wrapper] Pilot exit status: 0
[2026-01-09 20:11:19] 2026-01-10 01:11:19,035 [wrapper] pandaids: 6964539098
[2026-01-09 20:11:19] 2026-01-10 01:11:19,368 [wrapper] cleanup supervisor_pilot 3833056 2180307
[2026-01-09 20:11:19] 2026-01-10 01:11:19,390 [wrapper] Test setup, not cleaning
[2026-01-09 20:11:19] 2026-01-10 01:11:19,413 [wrapper] apfmon messages muted
[2026-01-09 20:11:19] 2026-01-10 01:11:19,428 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:11:19] 2026-01-10 01:11:19,450 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:11:19]  *** Error codes and diagnostics ***
[2026-01-09 20:11:19]     "exeErrorCode": 0,
[2026-01-09 20:11:19]     "exeErrorDiag": "",
[2026-01-09 20:11:19]     "pilotErrorCode": 0,
[2026-01-09 20:11:19]     "pilotErrorDiag": "",
[2026-01-09 20:11:19]  *** Listing of results directory ***
[2026-01-09 20:11:19] total 443612
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas      5112 Jan  9 10:55 queuedata.json
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas    579449 Jan  9 10:55 pilot3.tar.gz
[2026-01-09 20:11:19] -rwx------. 1 boincer umatlas     36322 Jan  9 10:56 runpilot2-wrapper.sh
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas       100 Jan  9 16:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:11:19] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 16:20 run_atlas
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas       105 Jan  9 16:20 job.xml
[2026-01-09 20:11:19] -rw-r--r--. 2 boincer umatlas 223322160 Jan  9 16:20 EVNT.47898824._000954.pool.root.1
[2026-01-09 20:11:19] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:20 start_atlas.sh
[2026-01-09 20:11:19] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 16:20 shared
[2026-01-09 20:11:19] -rw-r--r--. 2 boincer umatlas    592401 Jan  9 16:20 input.tar.gz
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas         0 Jan  9 16:20 boinc_lockfile
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas      2517 Jan  9 16:20 pandaJob.out
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas        57 Jan  9 16:20 setup.sh.local
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas    989398 Jan  9 16:21 agis_schedconf.cvmfs.json
[2026-01-09 20:11:19] drwx------. 5 boincer umatlas      4096 Jan  9 16:21 pilot3
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas 222719042 Jan  9 20:08 HITS.47898826._039982.pool.root.1
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas       531 Jan  9 20:08 boinc_task_state.xml
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas      1035 Jan  9 20:09 memory_monitor_summary.json
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas   1516240 Jan  9 20:09 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas    430307 Jan  9 20:09 log.47898826._039982.job.log.tgz.1
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas        95 Jan  9 20:10 pilot_heartbeat.json
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas      7781 Jan  9 20:10 heartbeat.json
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas      7173 Jan  9 20:10 init_data.xml
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas      4825 Jan  9 20:11 pilotlog.txt
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:11 boinc_mmap_file
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas   1716627 Jan  9 20:11 log.47898826._039982.job.log.1
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas        28 Jan  9 20:11 wrapper_checkpoint.txt
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas       357 Jan  9 20:11 output.list
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:11 runtime_log
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas   2170880 Jan  9 20:11 result.tar.gz
[2026-01-09 20:11:19] -rw-------. 1 boincer umatlas       654 Jan  9 20:11 tluLDmP1Ty8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxShKDm7CkeMn.diag
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 20:11 runtime_log.err
[2026-01-09 20:11:19] -rw-r--r--. 1 boincer umatlas     21526 Jan  9 20:11 stderr.txt
[2026-01-09 20:11:20] HITS file was successfully produced:
[2026-01-09 20:11:20] -rw-------. 1 boincer umatlas 222719042 Jan  9 20:08 shared/HITS.pool.root.1
[2026-01-09 20:11:20]  *** Contents of shared directory: ***
[2026-01-09 20:11:20] total 438312
[2026-01-09 20:11:20] -rw-r--r--. 2 boincer umatlas 223322160 Jan  9 16:20 ATLAS.root_0
[2026-01-09 20:11:20] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:20 start_atlas.sh
[2026-01-09 20:11:20] -rw-r--r--. 2 boincer umatlas    592401 Jan  9 16:20 input.tar.gz
[2026-01-09 20:11:20] -rw-------. 1 boincer umatlas 222719042 Jan  9 20:08 HITS.pool.root.1
[2026-01-09 20:11:20] -rw-------. 1 boincer umatlas   2170880 Jan  9 20:11 result.tar.gz
20:11:21 (2174365): run_atlas exited; CPU time 31641.164618
20:11:21 (2174365): called boinc_finish(0)

</stderr_txt>
]]>

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