Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
16:10:11 (25747): wrapper (7.7.26015): starting
16:10:11 (25747): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:10:11] Arguments: --nthreads 8
[2026-01-09 16:10:11] Threads: 8
[2026-01-09 16:10:11] Checking for CVMFS
[2026-01-09 16:10:11] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:10:11] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:10:11] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:10:11] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:10:11] 2.11.2.0 3838 206346 139220 154956 1 57 13505034 18432000 1009 130560 0 155393086 99.989 7150157 29828 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 16:10:11] CVMFS is ok
[2026-01-09 16:10:11] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:10:11] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:10:11] Further information can be found at the LHC@home message board.
[2026-01-09 16:10:11] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:10:11] Checking for apptainer binary...
[2026-01-09 16:10:11] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:10:11] Running /usr/bin/apptainer --version
[2026-01-09 16:10:11] apptainer version 1.3.2-1.el7
[2026-01-09 16:10:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:10:12] c-206-4.aglt2.org
[2026-01-09 16:10:12] apptainer works
[2026-01-09 16:10:12] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:10:12] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:10:12] Starting ATLAS job with PandaID=6963378815
[2026-01-09 16:10:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:11:36 (20257): wrapper (7.7.26015): starting
09:11:36 (20257): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 09:11:36] Arguments: --nthreads 8
[2026-01-10 09:11:36] Threads: 8
[2026-01-10 09:11:36] This job has been restarted, cleaning up previous attempt
[2026-01-10 09:11:36] Checking for CVMFS
[2026-01-10 09:11:36] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:11:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:11:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:11:37] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:11:37] 2.11.2.0 3838 207368 145052 154981 1 90 13676962 18432001 1 130560 0 156268475 99.989 7185718 29866 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-10 09:11:37] CVMFS is ok
[2026-01-10 09:11:37] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 09:11:37] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 09:11:37] Further information can be found at the LHC@home message board.
[2026-01-10 09:11:37] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:11:37] Checking for apptainer binary...
[2026-01-10 09:11:37] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:11:37] Running /usr/bin/apptainer --version
[2026-01-10 09:11:37] apptainer version 1.3.2-1.el7
[2026-01-10 09:11:37] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:11:38] c-206-4.aglt2.org
[2026-01-10 09:11:38] apptainer works
[2026-01-10 09:11:38] Set ATHENA_PROC_NUMBER=8
[2026-01-10 09:11:38] Set ATHENA_CORE_NUMBER=8
[2026-01-10 09:11:38] Starting ATLAS job with PandaID=6963378815
[2026-01-10 09:11:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 00:36:15]  *** The last 200 lines of the pilot log: ***
[2026-01-11 00:36:15] 2026-01-11 05:35:40,595 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 00:36:15] 2026-01-11 05:35:40,846 | INFO     | CPU arch script returned: x86-64-v2
[2026-01-11 00:36:15] 2026-01-11 05:35:40,850 | INFO     | found 12 cores (6 cores per socket, 2 sockets) HT, CPU MHz: 2039.75
[2026-01-11 00:36:15] 2026-01-11 05:35:40,853 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6963378815/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 00:36:15] 2026-01-11 05:35:40,853 | INFO     | extracted standard info from prmon json
[2026-01-11 00:36:15] 2026-01-11 05:35:40,853 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 00:36:15] 2026-01-11 05:35:40,853 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 00:36:15] 2026-01-11 05:35:40,867 | INFO     | fitting pss+swap vs Time
[2026-01-11 00:36:15] 2026-01-11 05:35:40,868 | INFO     | sum of square deviations: 232899939048.55362
[2026-01-11 00:36:15] 2026-01-11 05:35:40,883 | INFO     | sum of deviations: 1461947806116.624
[2026-01-11 00:36:15] 2026-01-11 05:35:40,883 | INFO     | mean x: 1768082031.1122112
[2026-01-11 00:36:15] 2026-01-11 05:35:40,884 | INFO     | mean y: 2886213.0429042904
[2026-01-11 00:36:15] 2026-01-11 05:35:40,884 | INFO     | intersect: -11095629557.198877
[2026-01-11 00:36:15] 2026-01-11 05:35:40,885 | INFO     | chi2: 5.65555156489847
[2026-01-11 00:36:15] 2026-01-11 05:35:40,886 | INFO     | sum of square deviations: 229077833378.4912
[2026-01-11 00:36:15] 2026-01-11 05:35:40,901 | INFO     | sum of deviations: 1721434413392.8752
[2026-01-11 00:36:15] 2026-01-11 05:35:40,901 | INFO     | mean x: 1768081878.6128318
[2026-01-11 00:36:15] 2026-01-11 05:35:40,901 | INFO     | mean y: 2896556.545353982
[2026-01-11 00:36:15] 2026-01-11 05:35:40,901 | INFO     | intersect: -13283578815.830107
[2026-01-11 00:36:15] 2026-01-11 05:35:40,902 | INFO     | chi2: 3.139403015140279
[2026-01-11 00:36:15] 2026-01-11 05:35:40,902 | INFO     | current chi2=3.139403015140279 (change=44.489887871853604 %)
[2026-01-11 00:36:15] 2026-01-11 05:35:40,903 | INFO     | sum of square deviations: 225297775008.42703
[2026-01-11 00:36:15] 2026-01-11 05:35:40,919 | INFO     | sum of deviations: 1852733541390.8267
[2026-01-11 00:36:15] 2026-01-11 05:35:40,919 | INFO     | mean x: 1768081726.1134593
[2026-01-11 00:36:15] 2026-01-11 05:35:40,919 | INFO     | mean y: 2901849.9232480535
[2026-01-11 00:36:15] 2026-01-11 05:35:40,919 | INFO     | intersect: -14536896946.438889
[2026-01-11 00:36:15] 2026-01-11 05:35:40,920 | INFO     | chi2: 2.4030849509449537
[2026-01-11 00:36:15] 2026-01-11 05:35:40,920 | INFO     | current chi2=2.4030849509449537 (change=23.454079028538622 %)
[2026-01-11 00:36:15] 2026-01-11 05:35:40,920 | INFO     | right removable region: 898
[2026-01-11 00:36:15] 2026-01-11 05:35:40,921 | INFO     | sum of square deviations: 229077771158.4911
[2026-01-11 00:36:15] 2026-01-11 05:35:40,936 | INFO     | sum of deviations: 1239564706103.9036
[2026-01-11 00:36:15] 2026-01-11 05:35:40,936 | INFO     | mean x: 1768082183.6128318
[2026-01-11 00:36:15] 2026-01-11 05:35:40,937 | INFO     | mean y: 2895070.525442478
[2026-01-11 00:36:15] 2026-01-11 05:35:40,937 | INFO     | intersect: -9564389704.483383
[2026-01-11 00:36:15] 2026-01-11 05:35:40,938 | INFO     | chi2: 3.708268475825036
[2026-01-11 00:36:15] 2026-01-11 05:35:40,938 | INFO     | current chi2=3.708268475825036 (change=34.43135592926721 %)
[2026-01-11 00:36:15] 2026-01-11 05:35:40,939 | INFO     | sum of square deviations: 225297815876.098
[2026-01-11 00:36:15] 2026-01-11 05:35:40,954 | INFO     | sum of deviations: 1164572238300.6753
[2026-01-11 00:36:15] 2026-01-11 05:35:40,954 | INFO     | mean x: 1768082336.1101224
[2026-01-11 00:36:15] 2026-01-11 05:35:40,954 | INFO     | mean y: 2898095.5083426028
[2026-01-11 00:36:15] 2026-01-11 05:35:40,954 | INFO     | intersect: -9136380932.371923
[2026-01-11 00:36:15] 2026-01-11 05:35:40,955 | INFO     | chi2: 3.6129048603012963
[2026-01-11 00:36:15] 2026-01-11 05:35:40,955 | INFO     | current chi2=3.6129048603012963 (change=2.5716480925109613 %)
[2026-01-11 00:36:15] 2026-01-11 05:35:40,955 | INFO     | left removable region: 20
[2026-01-11 00:36:15] 2026-01-11 05:35:40,956 | INFO     | sum of square deviations: 209875841464.27463
[2026-01-11 00:36:15] 2026-01-11 05:35:40,971 | INFO     | sum of deviations: 1446429548132.113
[2026-01-11 00:36:15] 2026-01-11 05:35:40,971 | INFO     | mean x: 1768082305.6025057
[2026-01-11 00:36:15] 2026-01-11 05:35:40,971 | INFO     | mean y: 2919503.6765375854
[2026-01-11 00:36:15] 2026-01-11 05:35:40,971 | INFO     | intersect: -12182410987.485983
[2026-01-11 00:36:15] 2026-01-11 05:35:40,972 | INFO     | chi2: 0.22597970299769896
[2026-01-11 00:36:15] 2026-01-11 05:35:40,972 | INFO     | current memory leak: 6.89 B/s (using 878 data points, chi2=0.23)
[2026-01-11 00:36:15] 2026-01-11 05:35:40,973 | INFO     | could have reported an average CPU frequency of 2422 MHz (34 samples)
[2026-01-11 00:36:15] 2026-01-11 05:35:40,973 | INFO     | ..............................
[2026-01-11 00:36:15] 2026-01-11 05:35:40,973 | INFO     | . Timing measurements:
[2026-01-11 00:36:15] 2026-01-11 05:35:40,973 | INFO     | . get job = 0 s
[2026-01-11 00:36:15] 2026-01-11 05:35:40,973 | INFO     | . initial setup = 2 s
[2026-01-11 00:36:15] 2026-01-11 05:35:40,973 | INFO     | . payload setup = 6 s
[2026-01-11 00:36:15] 2026-01-11 05:35:40,974 | INFO     | . stage-in = 0 s
[2026-01-11 00:36:15] 2026-01-11 05:35:40,974 | INFO     | . payload execution = 55395 s
[2026-01-11 00:36:15] 2026-01-11 05:35:40,974 | INFO     | . stage-out = 2 s
[2026-01-11 00:36:15] 2026-01-11 05:35:40,974 | INFO     | . log creation = 0 s
[2026-01-11 00:36:15] 2026-01-11 05:35:40,974 | INFO     | ..............................
[2026-01-11 00:36:15] 2026-01-11 05:35:41,057 | INFO     | 
[2026-01-11 00:36:15] 2026-01-11 05:35:41,057 | INFO     | job summary report
[2026-01-11 00:36:15] 2026-01-11 05:35:41,058 | INFO     | --------------------------------------------------
[2026-01-11 00:36:15] 2026-01-11 05:35:41,058 | INFO     | PanDA job id: 6963378815
[2026-01-11 00:36:15] 2026-01-11 05:35:41,058 | INFO     | task id: 47962010
[2026-01-11 00:36:15] 2026-01-11 05:35:41,058 | INFO     | errors: (none)
[2026-01-11 00:36:15] 2026-01-11 05:35:41,058 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 00:36:15] 2026-01-11 05:35:41,058 | INFO     | pilot state: finished 
[2026-01-11 00:36:15] 2026-01-11 05:35:41,059 | INFO     | transexitcode: 0
[2026-01-11 00:36:15] 2026-01-11 05:35:41,059 | INFO     | exeerrorcode: 0
[2026-01-11 00:36:15] 2026-01-11 05:35:41,059 | INFO     | exeerrordiag: 
[2026-01-11 00:36:15] 2026-01-11 05:35:41,059 | INFO     | exitcode: 0
[2026-01-11 00:36:15] 2026-01-11 05:35:41,059 | INFO     | exitmsg: OK
[2026-01-11 00:36:15] 2026-01-11 05:35:41,059 | INFO     | cpuconsumptiontime: 437540 s
[2026-01-11 00:36:15] 2026-01-11 05:35:41,059 | INFO     | nevents: 900
[2026-01-11 00:36:15] 2026-01-11 05:35:41,059 | INFO     | neventsw: 0
[2026-01-11 00:36:15] 2026-01-11 05:35:41,059 | INFO     | pid: 18478
[2026-01-11 00:36:15] 2026-01-11 05:35:41,059 | INFO     | pgrp: 18478
[2026-01-11 00:36:15] 2026-01-11 05:35:41,060 | INFO     | corecount: 8
[2026-01-11 00:36:15] 2026-01-11 05:35:41,060 | INFO     | event service: False
[2026-01-11 00:36:15] 2026-01-11 05:35:41,060 | INFO     | sizes: {0: 2284451, 1: 2284650, 5: 2284912, 12: 2284968, 55405: 2336180, 55409: 2345174, 55410: 2345358, 55414: 2345604}
[2026-01-11 00:36:15] 2026-01-11 05:35:41,060 | INFO     | --------------------------------------------------
[2026-01-11 00:36:15] 2026-01-11 05:35:41,060 | INFO     | 
[2026-01-11 00:36:15] 2026-01-11 05:35:41,060 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-01-11 00:36:15] 2026-01-11 05:35:41,075 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,075 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,075 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,075 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,075 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,075 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,076 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,076 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,076 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,076 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,076 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,076 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,076 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,076 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,076 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,077 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,077 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,077 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 00:36:15] 2026-01-11 05:35:41,077 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,077 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 00:36:15] 2026-01-11 05:35:41,077 | INFO     | job 6963378815 has completed (purged errors)
[2026-01-11 00:36:15] 2026-01-11 05:35:41,077 | INFO     | overall cleanup function is called
[2026-01-11 00:36:15] 2026-01-11 05:35:42,089 | INFO     | --- collectZombieJob: --- 10, [18478]
[2026-01-11 00:36:15] 2026-01-11 05:35:42,089 | INFO     | zombie collector waiting for pid 18478
[2026-01-11 00:36:15] 2026-01-11 05:35:42,089 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 00:36:15] 2026-01-11 05:35:42,089 | INFO     | collected zombie processes
[2026-01-11 00:36:15] 2026-01-11 05:35:42,089 | INFO     | will attempt to kill all subprocesses of pid=18478
[2026-01-11 00:36:15] 2026-01-11 05:35:42,204 | INFO     | process IDs to be killed: [18478] (in reverse order)
[2026-01-11 00:36:15] 2026-01-11 05:35:42,297 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 00:36:15] 2026-01-11 05:35:42,298 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 00:36:15] 2026-01-11 05:35:42,300 | INFO     | did not find any defunct processes belonging to 18478
[2026-01-11 00:36:15] 2026-01-11 05:35:42,302 | INFO     | did not find any defunct processes belonging to 18478
[2026-01-11 00:36:15] 2026-01-11 05:35:42,302 | INFO     | ready for new job
[2026-01-11 00:36:15] 2026-01-11 05:35:42,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 00:36:15] 2026-01-11 05:35:42,306 | INFO     | ***************************************
[2026-01-11 00:36:15] 2026-01-11 05:35:42,306 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 00:36:15] 2026-01-11 05:35:42,306 | INFO     | ***************************************
[2026-01-11 00:36:15] 2026-01-11 05:35:42,306 | INFO     | 
[2026-01-11 00:36:15] 2026-01-11 05:35:42,307 | INFO     | architecture information:
[2026-01-11 00:36:15] 2026-01-11 05:35:42,307 | INFO     | executing command: cat /etc/os-release
[2026-01-11 00:36:15] 2026-01-11 05:35:42,317 | INFO     | cat /etc/os-release:
[2026-01-11 00:36:15] NAME="CentOS Linux"
[2026-01-11 00:36:15] VERSION="7 (Core)"
[2026-01-11 00:36:15] ID="centos"
[2026-01-11 00:36:15] ID_LIKE="rhel fedora"
[2026-01-11 00:36:15] VERSION_ID="7"
[2026-01-11 00:36:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 00:36:15] ANSI_COLOR="0;31"
[2026-01-11 00:36:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 00:36:15] HOME_URL="https://www.centos.org/"
[2026-01-11 00:36:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 00:36:15] 
[2026-01-11 00:36:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 00:36:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 00:36:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 00:36:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 00:36:15] 
[2026-01-11 00:36:15] 2026-01-11 05:35:42,318 | INFO     | ***************************************
[2026-01-11 00:36:15] 2026-01-11 05:35:42,821 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-01-11 00:36:15] 2026-01-11 05:35:42,831 | INFO     | sufficient remaining disk space (26546798592 B)
[2026-01-11 00:36:15] 2026-01-11 05:35:42,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 00:36:15] 2026-01-11 05:35:42,831 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 00:36:15] 2026-01-11 05:35:42,831 | INFO     | update_server=False
[2026-01-11 00:36:15] 2026-01-11 05:35:42,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 00:36:15] 2026-01-11 05:35:42,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 00:36:15] 2026-01-11 05:35:42,840 | INFO     | all data control threads have been joined
[2026-01-11 00:36:15] 2026-01-11 05:35:42,976 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 00:36:15] 2026-01-11 05:35:43,098 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 00:36:15] 2026-01-11 05:35:43,098 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 00:36:15] 2026-01-11 05:35:43,098 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 00:36:15] 2026-01-11 05:35:43,098 | INFO     | will abort loop
[2026-01-11 00:36:15] 2026-01-11 05:35:43,616 | INFO     | all payload control threads have been joined
[2026-01-11 00:36:15] 2026-01-11 05:35:43,742 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 00:36:15] 2026-01-11 05:35:43,834 | INFO     | [job] retrieve thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:43,837 | INFO     | [job] queue monitor thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:43,845 | INFO     | [data] control thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:43,917 | INFO     | [payload] validate_post thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:44,024 | INFO     | all job control threads have been joined
[2026-01-11 00:36:15] 2026-01-11 05:35:44,040 | INFO     | [job] validate thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:44,104 | INFO     | [job] job monitor thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:44,532 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:44,617 | INFO     | [payload] control thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:44,737 | INFO     | [data] copytool_in thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:44,818 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:44,992 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:44,996 | INFO     | [payload] failed_post thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:45,026 | INFO     | [job] control thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:45,748 | INFO     | [data] copytool_out thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:46,978 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:35:52,927 | INFO     | job.realtimelogging is not enabled
[2026-01-11 00:36:15] 2026-01-11 05:35:53,928 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 00:36:15] 2026-01-11 05:36:09,075 | INFO     | [monitor] cgroup control has ended
[2026-01-11 00:36:15] 2026-01-11 05:36:10,230 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140490412586816)>', '<ExcThread(monitor, started 140489302988544)>']
[2026-01-11 00:36:15] 2026-01-11 05:36:13,253 | INFO     | PID=31305 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 00:36:15] 2026-01-11 05:36:13,253 | INFO     | .. there are 2 such processes running
[2026-01-11 00:36:15] 2026-01-11 05:36:13,254 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 00:36:15] 2026-01-11 05:36:13,254 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 00:36:15] 2026-01-11 05:36:13,254 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 00:36:15] 2026-01-11 05:36:13,254 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 00:36:15] 2026-01-11 05:36:13,254 | INFO     | [monitor] control thread has ended
[2026-01-11 00:36:15] 2026-01-11 05:36:15,255 | INFO     | all workflow threads have been joined
[2026-01-11 00:36:15] 2026-01-11 05:36:15,255 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 00:36:15] 2026-01-11 05:36:15,255 | INFO     | traces error code: 0
[2026-01-11 00:36:15] 2026-01-11 05:36:15,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 00:36:15] 2026-01-11 05:36:15,346 [wrapper] ==== pilot stdout END ====
[2026-01-11 00:36:15] 2026-01-11 05:36:15,348 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 00:36:15] 2026-01-11 05:36:15,350 [wrapper] pilotpid: 31305
[2026-01-11 00:36:15] 2026-01-11 05:36:15,352 [wrapper] Pilot exit status: 0
[2026-01-11 00:36:15] 2026-01-11 05:36:15,359 [wrapper] pandaids: 6963378815 6963378815
[2026-01-11 00:36:15] 2026-01-11 05:36:15,384 [wrapper] cleanup supervisor_pilot 32467 31307
[2026-01-11 00:36:15] 2026-01-11 05:36:15,386 [wrapper] Test setup, not cleaning
[2026-01-11 00:36:15] 2026-01-11 05:36:15,388 [wrapper] apfmon messages muted
[2026-01-11 00:36:15] 2026-01-11 05:36:15,390 [wrapper] ==== wrapper stdout END ====
[2026-01-11 00:36:15] 2026-01-11 05:36:15,392 [wrapper] ==== wrapper stderr END ====
[2026-01-11 00:36:15]  *** Error codes and diagnostics ***
[2026-01-11 00:36:15]     "exeErrorCode": 0,
[2026-01-11 00:36:15]     "exeErrorDiag": "",
[2026-01-11 00:36:15]     "pilotErrorCode": 0,
[2026-01-11 00:36:15]     "pilotErrorDiag": "",
[2026-01-11 00:36:15]  *** Listing of results directory ***
[2026-01-11 00:36:15] total 1559152
[2026-01-11 00:36:15] drwx------ 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas    579449 Jan  9 02:13 pilot3.tar.gz
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas      5112 Jan  9 02:13 queuedata.json
[2026-01-11 00:36:15] -rwx------ 1 boincer umatlas     36322 Jan  9 02:14 runpilot2-wrapper.sh
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas       100 Jan  9 16:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 00:36:15] -rwxr-xr-x 1 boincer umatlas      7986 Jan  9 16:10 run_atlas
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas       105 Jan  9 16:10 job.xml
[2026-01-11 00:36:15] -rw-r--r-- 3 boincer umatlas 391949667 Jan  9 16:10 EVNT.47962006._000105.pool.root.1
[2026-01-11 00:36:15] -rw-r--r-- 3 boincer umatlas 391949667 Jan  9 16:10 ATLAS.root_0
[2026-01-11 00:36:15] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 16:10 start_atlas.sh
[2026-01-11 00:36:15] drwxrwx--x 2 boincer umatlas      4096 Jan  9 16:10 shared
[2026-01-11 00:36:15] -rw-r--r-- 2 boincer umatlas    592616 Jan  9 16:10 input.tar.gz
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas         0 Jan  9 16:10 boinc_lockfile
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas      2892 Jan 10 09:11 pandaJob.out
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas        57 Jan 10 09:11 setup.sh.local
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas    989556 Jan 10 09:11 agis_schedconf.cvmfs.json
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas       534 Jan 11 00:22 boinc_task_state.xml
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas      5953 Jan 11 00:28 init_data.xml
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas 788842905 Jan 11 00:35 HITS.47962010._001296.pool.root.1
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas      1064 Jan 11 00:35 memory_monitor_summary.json
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas   1516240 Jan 11 00:35 agis_ddmendpoints.agis.ALL.json
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas   2114059 Jan 11 00:35 log.47962010._001296.job.log.tgz.1
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas      8655 Jan 11 00:35 heartbeat.json
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas        96 Jan 11 00:35 pilot_heartbeat.json
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas        30 Jan 11 00:36 wrapper_checkpoint.txt
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas      8192 Jan 11 00:36 boinc_mmap_file
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas      5079 Jan 11 00:36 pilotlog.txt
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas   7840777 Jan 11 00:36 log.47962010._001296.job.log.1
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas       353 Jan 11 00:36 output.list
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas       620 Jan 11 00:36 runtime_log
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas   9973760 Jan 11 00:36 result.tar.gz
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas      9423 Jan 11 00:36 runtime_log.err
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas       791 Jan 11 00:36 iocMDmSsLy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjHhKDmKuItPo.diag
[2026-01-11 00:36:15] -rw-r--r-- 1 boincer umatlas     23316 Jan 11 00:36 stderr.txt
[2026-01-11 00:36:15] HITS file was successfully produced:
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas 788842905 Jan 11 00:35 shared/HITS.pool.root.1
[2026-01-11 00:36:15]  *** Contents of shared directory: ***
[2026-01-11 00:36:15] total 1163460
[2026-01-11 00:36:15] -rw-r--r-- 3 boincer umatlas 391949667 Jan  9 16:10 ATLAS.root_0
[2026-01-11 00:36:15] -rw-r--r-- 2 boincer umatlas     15847 Jan  9 16:10 start_atlas.sh
[2026-01-11 00:36:15] -rw-r--r-- 2 boincer umatlas    592616 Jan  9 16:10 input.tar.gz
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas 788842905 Jan 11 00:35 HITS.pool.root.1
[2026-01-11 00:36:15] -rw------- 1 boincer umatlas   9973760 Jan 11 00:36 result.tar.gz
00:36:17 (20257): run_atlas exited; CPU time 437358.391134
00:36:17 (20257): called boinc_finish(0)

</stderr_txt>
]]>

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