Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:03:24 (3137106): wrapper (7.7.26015): starting
19:03:24 (3137106): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 19:03:24] Arguments: --nthreads 4
[2026-01-10 19:03:24] Threads: 4
[2026-01-10 19:03:24] Checking for CVMFS
[2026-01-10 19:03:24] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 19:03:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 19:03:24] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 19:03:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 19:03:24] 2.9.2.0 2024436 4417 100836 154987 3 81 26094634 36864000 0 130560 0 2909833 99.989 160622 3531 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 19:03:24] CVMFS is ok
[2026-01-10 19:03:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 19:03:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 19:03:24] Further information can be found at the LHC@home message board.
[2026-01-10 19:03:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 19:03:24] Checking for apptainer binary...
[2026-01-10 19:03:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 19:03:24] Running /usr/bin/apptainer --version
[2026-01-10 19:03:24] apptainer version 1.4.1-1.1
[2026-01-10 19:03:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 19:03:24] magicA250
[2026-01-10 19:03:24] apptainer works
[2026-01-10 19:03:24] Set ATHENA_PROC_NUMBER=4
[2026-01-10 19:03:24] Set ATHENA_CORE_NUMBER=4
[2026-01-10 19:03:24] Starting ATLAS job with PandaID=6963167897
[2026-01-10 19:03:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 20:43:45]  *** The last 200 lines of the pilot log: ***
[2026-01-10 20:43:45] 2026-01-10 19:43:09,644 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 20:43:45] 2026-01-10 19:43:09,644 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 20:43:45] 2026-01-10 19:43:09,644 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 20:43:45] 2026-01-10 19:43:09,644 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 20:43:45] 2026-01-10 19:43:09,645 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 20:43:45] 2026-01-10 19:43:09,645 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 20:43:45] 2026-01-10 19:43:09,645 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 20:43:45] 2026-01-10 19:43:09,645 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 20:43:45] 2026-01-10 19:43:09,645 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 20:43:45] 2026-01-10 19:43:09,645 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 20:43:45] 2026-01-10 19:43:09,645 | INFO     | job 6963167897 has completed (purged errors)
[2026-01-10 20:43:45] 2026-01-10 19:43:09,645 | INFO     | overall cleanup function is called
[2026-01-10 20:43:45] 2026-01-10 19:43:10,651 | INFO     | --- collectZombieJob: --- 10, [3147470]
[2026-01-10 20:43:45] 2026-01-10 19:43:10,651 | INFO     | zombie collector waiting for pid 3147470
[2026-01-10 20:43:45] 2026-01-10 19:43:10,651 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 20:43:45] 2026-01-10 19:43:10,651 | INFO     | collected zombie processes
[2026-01-10 20:43:45] 2026-01-10 19:43:10,652 | INFO     | will attempt to kill all subprocesses of pid=3147470
[2026-01-10 20:43:45] 2026-01-10 19:43:10,695 | INFO     | process IDs to be killed: [3147470] (in reverse order)
[2026-01-10 20:43:45] 2026-01-10 19:43:10,729 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 20:43:45] 2026-01-10 19:43:10,729 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 20:43:45] 2026-01-10 19:43:10,730 | INFO     | did not find any defunct processes belonging to 3147470
[2026-01-10 20:43:45] 2026-01-10 19:43:10,732 | INFO     | did not find any defunct processes belonging to 3147470
[2026-01-10 20:43:45] 2026-01-10 19:43:10,732 | INFO     | ready for new job
[2026-01-10 20:43:45] 2026-01-10 19:43:10,732 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 20:43:45] 2026-01-10 19:43:10,733 | INFO     | ***************************************
[2026-01-10 20:43:45] 2026-01-10 19:43:10,733 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 20:43:45] 2026-01-10 19:43:10,733 | INFO     | ***************************************
[2026-01-10 20:43:45] 2026-01-10 19:43:10,733 | INFO     | 
[2026-01-10 20:43:45] 2026-01-10 19:43:10,733 | INFO     | architecture information:
[2026-01-10 20:43:45] 2026-01-10 19:43:10,733 | INFO     | executing command: cat /etc/os-release
[2026-01-10 20:43:45] 2026-01-10 19:43:10,748 | INFO     | cat /etc/os-release:
[2026-01-10 20:43:45] NAME="CentOS Linux"
[2026-01-10 20:43:45] VERSION="7 (Core)"
[2026-01-10 20:43:45] ID="centos"
[2026-01-10 20:43:45] ID_LIKE="rhel fedora"
[2026-01-10 20:43:45] VERSION_ID="7"
[2026-01-10 20:43:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 20:43:45] ANSI_COLOR="0;31"
[2026-01-10 20:43:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 20:43:45] HOME_URL="https://www.centos.org/"
[2026-01-10 20:43:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 20:43:45] 
[2026-01-10 20:43:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 20:43:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 20:43:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 20:43:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 20:43:45] 
[2026-01-10 20:43:45] 2026-01-10 19:43:10,748 | INFO     | ***************************************
[2026-01-10 20:43:45] 2026-01-10 19:43:11,251 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 20:43:45] 2026-01-10 19:43:11,267 | INFO     | sufficient remaining disk space (335520202752 B)
[2026-01-10 20:43:45] 2026-01-10 19:43:11,268 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 20:43:45] 2026-01-10 19:43:11,268 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 20:43:45] 2026-01-10 19:43:11,268 | INFO     | update_server=False
[2026-01-10 20:43:45] 2026-01-10 19:43:11,268 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 20:43:45] 2026-01-10 19:43:11,268 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 20:43:45] 2026-01-10 19:43:11,268 | INFO     | aborting loop
[2026-01-10 20:43:45] 2026-01-10 19:43:11,268 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 20:43:45] 2026-01-10 19:43:11,302 | INFO     | all data control threads have been joined
[2026-01-10 20:43:45] 2026-01-10 19:43:11,377 | INFO     | all payload control threads have been joined
[2026-01-10 20:43:45] 2026-01-10 19:43:11,380 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 20:43:45] 2026-01-10 19:43:11,914 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 20:43:45] 2026-01-10 19:43:12,274 | INFO     | [job] retrieve thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:12,274 | INFO     | [job] job monitor thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:12,274 | INFO     | [job] queue monitor thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:12,304 | INFO     | [data] control thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:12,383 | INFO     | [payload] control thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:12,458 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:12,723 | INFO     | all job control threads have been joined
[2026-01-10 20:43:45] 2026-01-10 19:43:12,746 | INFO     | [job] validate thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:12,827 | INFO     | [data] copytool_in thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:12,894 | INFO     | [payload] validate_post thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:12,998 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:13,129 | INFO     | [payload] failed_post thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:13,386 | INFO     | [data] copytool_out thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:13,669 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:13,728 | INFO     | [job] control thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:15,921 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:21,664 | INFO     | job.realtimelogging is not enabled
[2026-01-10 20:43:45] 2026-01-10 19:43:22,669 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 20:43:45] 2026-01-10 19:43:40,490 | INFO     | [monitor] cgroup control has ended
[2026-01-10 20:43:45] 2026-01-10 19:43:40,530 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140618677204800)>', '<ExcThread(monitor, started 140618319763200)>']
[2026-01-10 20:43:45] 2026-01-10 19:43:41,226 | INFO     | PID=3140891 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 20:43:45] 2026-01-10 19:43:41,226 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 20:43:45] 2026-01-10 19:43:41,226 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 20:43:45] 2026-01-10 19:43:41,226 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 20:43:45] 2026-01-10 19:43:41,226 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 20:43:45] 2026-01-10 19:43:41,226 | INFO     | [monitor] control thread has ended
[2026-01-10 20:43:45] 2026-01-10 19:43:45,555 | INFO     | all workflow threads have been joined
[2026-01-10 20:43:45] 2026-01-10 19:43:45,556 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 20:43:45] 2026-01-10 19:43:45,556 | INFO     | traces error code: 0
[2026-01-10 20:43:45] 2026-01-10 19:43:45,556 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 20:43:45] 2026-01-10 19:43:45,636 [wrapper] ==== pilot stdout END ====
[2026-01-10 20:43:45] 2026-01-10 19:43:45,640 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 20:43:45] 2026-01-10 19:43:45,644 [wrapper] pilotpid: 3140891
[2026-01-10 20:43:45] 2026-01-10 19:43:45,648 [wrapper] Pilot exit status: 0
[2026-01-10 20:43:45] 2026-01-10 19:43:45,661 [wrapper] pandaids: 6963167897
[2026-01-10 20:43:45] 2026-01-10 19:43:45,683 [wrapper] cleanup supervisor_pilot 3159666 3140892
[2026-01-10 20:43:45] 2026-01-10 19:43:45,687 [wrapper] Test setup, not cleaning
[2026-01-10 20:43:45] 2026-01-10 19:43:45,691 [wrapper] apfmon messages muted
[2026-01-10 20:43:45] 2026-01-10 19:43:45,695 [wrapper] ==== wrapper stdout END ====
[2026-01-10 20:43:45] 2026-01-10 19:43:45,699 [wrapper] ==== wrapper stderr END ====
[2026-01-10 20:43:45]  *** Error codes and diagnostics ***
[2026-01-10 20:43:45]     "exeErrorCode": 0,
[2026-01-10 20:43:45]     "exeErrorDiag": "",
[2026-01-10 20:43:45]     "pilotErrorCode": 0,
[2026-01-10 20:43:45]     "pilotErrorDiag": "",
[2026-01-10 20:43:45]  *** Listing of results directory ***
[2026-01-10 20:43:45] total 444112
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 20:43:45] -rwx------ 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc      5112 Jan  9 01:59 queuedata.json
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc       100 Jan 10 19:03 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 20:43:45] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 19:03 run_atlas
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc       105 Jan 10 19:03 job.xml
[2026-01-10 20:43:45] -rw-r--r-- 2 boinc boinc 225248561 Jan 10 19:03 EVNT.47898824._001343.pool.root.1
[2026-01-10 20:43:45] -rw-r--r-- 2 boinc boinc    592394 Jan 10 19:03 input.tar.gz
[2026-01-10 20:43:45] -rw-r--r-- 2 boinc boinc     15847 Jan 10 19:03 start_atlas.sh
[2026-01-10 20:43:45] drwxrwx--x 2 boinc boinc      4096 Jan 10 19:03 shared
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc         0 Jan 10 19:03 boinc_setup_complete
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc      6378 Jan 10 19:03 init_data.xml
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc         0 Jan 10 19:03 boinc_lockfile
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc      2516 Jan 10 19:03 pandaJob.out
[2026-01-10 20:43:45] -rw------- 1 boinc boinc    989548 Jan 10 19:03 agis_schedconf.cvmfs.json
[2026-01-10 20:43:45] -rw------- 1 boinc boinc   1516240 Jan 10 19:03 agis_ddmendpoints.agis.ALL.json
[2026-01-10 20:43:45] drwx------ 5 boinc boinc      4096 Jan 10 19:03 pilot3
[2026-01-10 20:43:45] -rw------- 1 boinc boinc 223342417 Jan 10 20:42 HITS.47898826._036099.pool.root.1
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc       530 Jan 10 20:42 boinc_task_state.xml
[2026-01-10 20:43:45] -rw------- 1 boinc boinc      1025 Jan 10 20:43 memory_monitor_summary.json
[2026-01-10 20:43:45] -rw------- 1 boinc boinc        95 Jan 10 20:43 pilot_heartbeat.json
[2026-01-10 20:43:45] -rw------- 1 boinc boinc    270973 Jan 10 20:43 log.47898826._036099.job.log.tgz.1
[2026-01-10 20:43:45] -rw------- 1 boinc boinc      7766 Jan 10 20:43 heartbeat.json
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc      8192 Jan 10 20:43 boinc_mmap_file
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc        27 Jan 10 20:43 wrapper_checkpoint.txt
[2026-01-10 20:43:45] -rw------- 1 boinc boinc      4824 Jan 10 20:43 pilotlog.txt
[2026-01-10 20:43:45] -rw------- 1 boinc boinc    867351 Jan 10 20:43 log.47898826._036099.job.log.1
[2026-01-10 20:43:45] -rw------- 1 boinc boinc       357 Jan 10 20:43 output.list
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc       620 Jan 10 20:43 runtime_log
[2026-01-10 20:43:45] -rw------- 1 boinc boinc   1157120 Jan 10 20:43 result.tar.gz
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc      8912 Jan 10 20:43 runtime_log.err
[2026-01-10 20:43:45] -rw------- 1 boinc boinc       662 Jan 10 20:43 73vKDm1zFy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmWdgKDm4E0odm.diag
[2026-01-10 20:43:45] -rw-r--r-- 1 boinc boinc     11927 Jan 10 20:43 stderr.txt
[2026-01-10 20:43:45] HITS file was successfully produced:
[2026-01-10 20:43:45] -rw------- 1 boinc boinc 223342417 Jan 10 20:42 shared/HITS.pool.root.1
[2026-01-10 20:43:45]  *** Contents of shared directory: ***
[2026-01-10 20:43:45] total 439816
[2026-01-10 20:43:45] -rw-r--r-- 2 boinc boinc 225248561 Jan 10 19:03 ATLAS.root_0
[2026-01-10 20:43:45] -rw-r--r-- 2 boinc boinc    592394 Jan 10 19:03 input.tar.gz
[2026-01-10 20:43:45] -rw-r--r-- 2 boinc boinc     15847 Jan 10 19:03 start_atlas.sh
[2026-01-10 20:43:45] -rw------- 1 boinc boinc 223342417 Jan 10 20:42 HITS.pool.root.1
[2026-01-10 20:43:45] -rw------- 1 boinc boinc   1157120 Jan 10 20:43 result.tar.gz
20:43:46 (3137106): run_atlas exited; CPU time 22817.608837
20:43:46 (3137106): called boinc_finish(0)

</stderr_txt>
]]>

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