Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:18:41 (3005262): wrapper (7.7.26015): starting
20:18:41 (3005262): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 20:18:41] Arguments: --nthreads 4
[2026-01-10 20:18:41] Threads: 4
[2026-01-10 20:18:41] Checking for CVMFS
[2026-01-10 20:18:41] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 20:18:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 20:18:41] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 20:18:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 20:18:42] 2.9.2.0 2125273 3460 98632 154990 0 56 21044907 36864001 0 130560 0 2317797 99.988 132998 3129 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 20:18:42] CVMFS is ok
[2026-01-10 20:18:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 20:18:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 20:18:42] Further information can be found at the LHC@home message board.
[2026-01-10 20:18:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 20:18:42] Checking for apptainer binary...
[2026-01-10 20:18:42] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 20:18:42] Running /usr/bin/apptainer --version
[2026-01-10 20:18:42] apptainer version 1.4.1-1.1
[2026-01-10 20:18:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 20:18:42] thA332a
[2026-01-10 20:18:42] apptainer works
[2026-01-10 20:18:42] Set ATHENA_PROC_NUMBER=4
[2026-01-10 20:18:42] Set ATHENA_CORE_NUMBER=4
[2026-01-10 20:18:42] Starting ATLAS job with PandaID=6963151518
[2026-01-10 20:18:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 21:58:12]  *** The last 200 lines of the pilot log: ***
[2026-01-10 21:58:12] 2026-01-10 20:57:41,230 | INFO     | process IDs to be killed: [3015655] (in reverse order)
[2026-01-10 21:58:12] 2026-01-10 20:57:41,264 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 21:58:12] 2026-01-10 20:57:41,264 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 21:58:12] 2026-01-10 20:57:41,266 | INFO     | did not find any defunct processes belonging to 3015655
[2026-01-10 21:58:12] 2026-01-10 20:57:41,267 | INFO     | did not find any defunct processes belonging to 3015655
[2026-01-10 21:58:12] 2026-01-10 20:57:41,267 | INFO     | ready for new job
[2026-01-10 21:58:12] 2026-01-10 20:57:41,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 21:58:12] 2026-01-10 20:57:41,268 | INFO     | ***************************************
[2026-01-10 21:58:12] 2026-01-10 20:57:41,268 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 21:58:12] 2026-01-10 20:57:41,268 | INFO     | ***************************************
[2026-01-10 21:58:12] 2026-01-10 20:57:41,268 | INFO     | 
[2026-01-10 21:58:12] 2026-01-10 20:57:41,269 | INFO     | architecture information:
[2026-01-10 21:58:12] 2026-01-10 20:57:41,269 | INFO     | executing command: cat /etc/os-release
[2026-01-10 21:58:12] 2026-01-10 20:57:41,284 | INFO     | cat /etc/os-release:
[2026-01-10 21:58:12] NAME="CentOS Linux"
[2026-01-10 21:58:12] VERSION="7 (Core)"
[2026-01-10 21:58:12] ID="centos"
[2026-01-10 21:58:12] ID_LIKE="rhel fedora"
[2026-01-10 21:58:12] VERSION_ID="7"
[2026-01-10 21:58:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 21:58:12] ANSI_COLOR="0;31"
[2026-01-10 21:58:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 21:58:12] HOME_URL="https://www.centos.org/"
[2026-01-10 21:58:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 21:58:12] 
[2026-01-10 21:58:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 21:58:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 21:58:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 21:58:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 21:58:12] 
[2026-01-10 21:58:12] 2026-01-10 20:57:41,284 | INFO     | ***************************************
[2026-01-10 21:58:12] 2026-01-10 20:57:41,787 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 21:58:12] 2026-01-10 20:57:41,805 | INFO     | sufficient remaining disk space (340248231936 B)
[2026-01-10 21:58:12] 2026-01-10 20:57:41,806 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 21:58:12] 2026-01-10 20:57:41,806 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 21:58:12] 2026-01-10 20:57:41,806 | INFO     | update_server=False
[2026-01-10 21:58:12] 2026-01-10 20:57:41,806 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 21:58:12] 2026-01-10 20:57:41,806 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 21:58:12] 2026-01-10 20:57:41,806 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 21:58:12] 2026-01-10 20:57:41,806 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 21:58:12] 2026-01-10 20:57:41,807 | INFO     | aborting loop
[2026-01-10 21:58:12] 2026-01-10 20:57:42,109 | INFO     | all data control threads have been joined
[2026-01-10 21:58:12] 2026-01-10 20:57:42,788 | INFO     | all payload control threads have been joined
[2026-01-10 21:58:12] 2026-01-10 20:57:42,810 | INFO     | [job] queue monitor thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:42,812 | INFO     | [job] retrieve thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:42,812 | INFO     | [job] job monitor thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:43,001 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:43,045 | INFO     | all job control threads have been joined
[2026-01-10 21:58:12] 2026-01-10 20:57:43,113 | INFO     | [data] control thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:43,229 | INFO     | [data] copytool_in thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:43,639 | INFO     | [payload] validate_post thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:43,794 | INFO     | [payload] control thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:43,813 | INFO     | [data] copytool_out thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:44,051 | INFO     | [job] validate thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:44,051 | INFO     | [job] control thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:44,139 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:44,216 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:44,353 | INFO     | [payload] failed_post thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:44,397 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 21:58:12] 2026-01-10 20:57:48,404 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:52,090 | INFO     | job.realtimelogging is not enabled
[2026-01-10 21:58:12] 2026-01-10 20:57:53,095 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 21:58:12] 2026-01-10 20:57:56,994 | INFO     | [monitor] cgroup control has ended
[2026-01-10 21:58:12] 2026-01-10 20:57:57,443 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140521553430336)>', '<ExcThread(monitor, started 140520877692672)>']
[2026-01-10 21:58:12] 2026-01-10 20:58:02,468 | INFO     | all workflow threads have been joined
[2026-01-10 21:58:12] 2026-01-10 20:58:02,469 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 21:58:12] 2026-01-10 20:58:02,469 | INFO     | traces error code: 0
[2026-01-10 21:58:12] 2026-01-10 20:58:02,470 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 21:58:12] 2026-01-10 20:58:12,125 | INFO     | PID=3009072 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 21:58:12] 2026-01-10 20:58:12,126 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 21:58:12] 2026-01-10 20:58:12,126 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 21:58:12] 2026-01-10 20:58:12,126 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 21:58:12] 2026-01-10 20:58:12,126 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 21:58:12] 2026-01-10 20:58:12,126 | INFO     | [monitor] control thread has ended
[2026-01-10 21:58:12] 2026-01-10 20:58:12,201 [wrapper] ==== pilot stdout END ====
[2026-01-10 21:58:12] 2026-01-10 20:58:12,206 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 21:58:12] 2026-01-10 20:58:12,210 [wrapper] pilotpid: 3009072
[2026-01-10 21:58:12] 2026-01-10 20:58:12,213 [wrapper] Pilot exit status: 0
[2026-01-10 21:58:12] 2026-01-10 20:58:12,225 [wrapper] pandaids: 6963151518
[2026-01-10 21:58:12] 2026-01-10 20:58:12,248 [wrapper] cleanup supervisor_pilot 3027882 3009073
[2026-01-10 21:58:12] 2026-01-10 20:58:12,251 [wrapper] Test setup, not cleaning
[2026-01-10 21:58:12] 2026-01-10 20:58:12,255 [wrapper] apfmon messages muted
[2026-01-10 21:58:12] 2026-01-10 20:58:12,260 [wrapper] ==== wrapper stdout END ====
[2026-01-10 21:58:12] 2026-01-10 20:58:12,263 [wrapper] ==== wrapper stderr END ====
[2026-01-10 21:58:12]  *** Error codes and diagnostics ***
[2026-01-10 21:58:12]     "exeErrorCode": 0,
[2026-01-10 21:58:12]     "exeErrorDiag": "",
[2026-01-10 21:58:12]     "pilotErrorCode": 0,
[2026-01-10 21:58:12]     "pilotErrorDiag": "",
[2026-01-10 21:58:12]  *** Listing of results directory ***
[2026-01-10 21:58:12] total 444400
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc    579449 Jan  8 17:02 pilot3.tar.gz
[2026-01-10 21:58:12] -rwx------ 1 boinc boinc     36322 Jan  8 17:05 runpilot2-wrapper.sh
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc      5112 Jan  8 17:07 queuedata.json
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc       100 Jan 10 20:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 21:58:12] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 20:18 run_atlas
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc       105 Jan 10 20:18 job.xml
[2026-01-10 21:58:12] -rw-r--r-- 2 boinc boinc 226032391 Jan 10 20:18 EVNT.47898824._001094.pool.root.1
[2026-01-10 21:58:12] -rw-r--r-- 2 boinc boinc    592397 Jan 10 20:18 input.tar.gz
[2026-01-10 21:58:12] -rw-r--r-- 2 boinc boinc     15847 Jan 10 20:18 start_atlas.sh
[2026-01-10 21:58:12] drwxrwx--x 2 boinc boinc      4096 Jan 10 20:18 shared
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc         0 Jan 10 20:18 boinc_setup_complete
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc      6370 Jan 10 20:18 init_data.xml
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc         0 Jan 10 20:18 boinc_lockfile
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc      2520 Jan 10 20:18 pandaJob.out
[2026-01-10 21:58:12] -rw------- 1 boinc boinc    989540 Jan 10 20:18 agis_schedconf.cvmfs.json
[2026-01-10 21:58:12] -rw------- 1 boinc boinc   1516240 Jan 10 20:18 agis_ddmendpoints.agis.ALL.json
[2026-01-10 21:58:12] drwx------ 5 boinc boinc      4096 Jan 10 20:18 pilot3
[2026-01-10 21:58:12] -rw------- 1 boinc boinc 222854594 Jan 10 21:57 HITS.47898826._028556.pool.root.1
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc       529 Jan 10 21:57 boinc_task_state.xml
[2026-01-10 21:58:12] -rw------- 1 boinc boinc        95 Jan 10 21:57 pilot_heartbeat.json
[2026-01-10 21:58:12] -rw------- 1 boinc boinc      1018 Jan 10 21:57 memory_monitor_summary.json
[2026-01-10 21:58:12] -rw------- 1 boinc boinc    282400 Jan 10 21:57 log.47898826._028556.job.log.tgz.1
[2026-01-10 21:58:12] -rw------- 1 boinc boinc      7777 Jan 10 21:57 heartbeat.json
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc        27 Jan 10 21:57 wrapper_checkpoint.txt
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc      8192 Jan 10 21:57 boinc_mmap_file
[2026-01-10 21:58:12] -rw------- 1 boinc boinc       747 Jan 10 21:58 pilotlog.txt
[2026-01-10 21:58:12] -rw------- 1 boinc boinc    860358 Jan 10 21:58 log.47898826._028556.job.log.1
[2026-01-10 21:58:12] -rw------- 1 boinc boinc       357 Jan 10 21:58 output.list
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc       620 Jan 10 21:58 runtime_log
[2026-01-10 21:58:12] -rw------- 1 boinc boinc   1157120 Jan 10 21:58 result.tar.gz
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc      8902 Jan 10 21:58 runtime_log.err
[2026-01-10 21:58:12] -rw------- 1 boinc boinc       660 Jan 10 21:58 SXILDmEh7x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmqofKDm19ZcWn.diag
[2026-01-10 21:58:12] -rw-r--r-- 1 boinc boinc     10179 Jan 10 21:58 stderr.txt
[2026-01-10 21:58:12] HITS file was successfully produced:
[2026-01-10 21:58:12] -rw------- 1 boinc boinc 222854594 Jan 10 21:57 shared/HITS.pool.root.1
[2026-01-10 21:58:12]  *** Contents of shared directory: ***
[2026-01-10 21:58:12] total 440104
[2026-01-10 21:58:12] -rw-r--r-- 2 boinc boinc 226032391 Jan 10 20:18 ATLAS.root_0
[2026-01-10 21:58:12] -rw-r--r-- 2 boinc boinc    592397 Jan 10 20:18 input.tar.gz
[2026-01-10 21:58:12] -rw-r--r-- 2 boinc boinc     15847 Jan 10 20:18 start_atlas.sh
[2026-01-10 21:58:12] -rw------- 1 boinc boinc 222854594 Jan 10 21:57 HITS.pool.root.1
[2026-01-10 21:58:12] -rw------- 1 boinc boinc   1157120 Jan 10 21:58 result.tar.gz
21:58:13 (3005262): run_atlas exited; CPU time 22613.196285
21:58:13 (3005262): called boinc_finish(0)

</stderr_txt>
]]>

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