Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
01:10:29 (30222): wrapper (7.7.26015): starting
01:10:29 (30222): wrapper: running run_atlas (--nthreads 8)
[2026-01-11 01:10:29] Arguments: --nthreads 8
[2026-01-11 01:10:29] Threads: 8
[2026-01-11 01:10:29] Checking for CVMFS
[2026-01-11 01:10:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 01:10:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 01:10:31] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 01:10:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 01:10:33] 2.11.2.0 14084 37556 129588 154997 2 63 20017102 25165824 899 130560 0 16090945 99.774 11617733 3486 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-11 01:10:33] CVMFS is ok
[2026-01-11 01:10:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 01:10:33] Checking for apptainer binary...
[2026-01-11 01:10:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 01:10:33] Running /usr/bin/apptainer --version
[2026-01-11 01:10:33] apptainer version 1.3.2-1.el7
[2026-01-11 01:10:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 01:11:16] cg-vwn482.simple-grid.lan
[2026-01-11 01:11:16] apptainer works
[2026-01-11 01:11:16] Set ATHENA_PROC_NUMBER=8
[2026-01-11 01:11:16] Set ATHENA_CORE_NUMBER=8
[2026-01-11 01:11:16] Starting ATLAS job with PandaID=6963161294
[2026-01-11 01:11:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 06:48:58]  *** The last 200 lines of the pilot log: ***
[2026-01-11 06:48:58] 2026-01-11 05:47:47,622 | INFO     | sum of square deviations: 9877610318.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,625 | INFO     | sum of deviations: 154850428088.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,625 | INFO     | mean x: 1768100687.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,625 | INFO     | mean y: 2444965.1324921134
[2026-01-11 06:48:58] 2026-01-11 05:47:47,625 | INFO     | intersect: -27715913976.979897
[2026-01-11 06:48:58] 2026-01-11 05:47:47,626 | INFO     | chi2: 9.961782425144563
[2026-01-11 06:48:58] 2026-01-11 05:47:47,626 | INFO     | sum of square deviations: 9417545878.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,629 | INFO     | sum of deviations: 173269569872.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,629 | INFO     | mean x: 1768100534.5
[2026-01-11 06:48:58] 2026-01-11 05:47:47,629 | INFO     | mean y: 2450981.871794872
[2026-01-11 06:48:58] 2026-01-11 05:47:47,629 | INFO     | intersect: -32528106667.859497
[2026-01-11 06:48:58] 2026-01-11 05:47:47,630 | INFO     | chi2: 9.271072976273725
[2026-01-11 06:48:58] 2026-01-11 05:47:47,630 | INFO     | current chi2=9.271072976273725 (change=6.9335929996565255 %)
[2026-01-11 06:48:58] 2026-01-11 05:47:47,630 | INFO     | right removable region: 311
[2026-01-11 06:48:58] 2026-01-11 05:47:47,633 | INFO     | sum of square deviations: 9417545878.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,636 | INFO     | sum of deviations: 41745540899.49999
[2026-01-11 06:48:58] 2026-01-11 05:47:47,636 | INFO     | mean x: 1768100839.5
[2026-01-11 06:48:58] 2026-01-11 05:47:47,636 | INFO     | mean y: 2482443.144230769
[2026-01-11 06:48:58] 2026-01-11 05:47:47,636 | INFO     | intersect: -7835050483.79518
[2026-01-11 06:48:58] 2026-01-11 05:47:47,637 | INFO     | chi2: 4.708431721070802
[2026-01-11 06:48:58] 2026-01-11 05:47:47,637 | INFO     | current chi2=4.708431721070802 (change=52.735047603667425 %)
[2026-01-11 06:48:58] 2026-01-11 05:47:47,638 | INFO     | sum of square deviations: 8971993338.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,641 | INFO     | sum of deviations: -49471228933.00001
[2026-01-11 06:48:58] 2026-01-11 05:47:47,641 | INFO     | mean x: 1768100992.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,641 | INFO     | mean y: 2513641.648208469
[2026-01-11 06:48:58] 2026-01-11 05:47:47,641 | INFO     | intersect: 9751755048.396166
[2026-01-11 06:48:58] 2026-01-11 05:47:47,641 | INFO     | chi2: 1.5055843999282117
[2026-01-11 06:48:58] 2026-01-11 05:47:47,642 | INFO     | current chi2=1.5055843999282117 (change=68.02365439026036 %)
[2026-01-11 06:48:58] 2026-01-11 05:47:47,642 | INFO     | sum of square deviations: 8540720135.5
[2026-01-11 06:48:58] 2026-01-11 05:47:47,652 | INFO     | sum of deviations: -75854621485.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,652 | INFO     | mean x: 1768101144.5
[2026-01-11 06:48:58] 2026-01-11 05:47:47,653 | INFO     | mean y: 2522900.5165562914
[2026-01-11 06:48:58] 2026-01-11 05:47:47,653 | INFO     | intersect: 15705957849.259445
[2026-01-11 06:48:58] 2026-01-11 05:47:47,653 | INFO     | chi2: 0.9997919516371592
[2026-01-11 06:48:58] 2026-01-11 05:47:47,653 | INFO     | current chi2=0.9997919516371592 (change=33.59442674320811 %)
[2026-01-11 06:48:58] 2026-01-11 05:47:47,654 | INFO     | sum of square deviations: 8123493708.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,657 | INFO     | sum of deviations: -73822297905.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,657 | INFO     | mean x: 1768101297.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,657 | INFO     | mean y: 2522138.377104377
[2026-01-11 06:48:58] 2026-01-11 05:47:47,657 | INFO     | intersect: 16070153303.624372
[2026-01-11 06:48:58] 2026-01-11 05:47:47,657 | INFO     | chi2: 0.9869608168810731
[2026-01-11 06:48:58] 2026-01-11 05:47:47,658 | INFO     | current chi2=0.9869608168810731 (change=1.2833804808165463 %)
[2026-01-11 06:48:58] 2026-01-11 05:47:47,658 | INFO     | left removable region: 40
[2026-01-11 06:48:58] 2026-01-11 05:47:47,658 | INFO     | sum of square deviations: 6171352920.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,661 | INFO     | sum of deviations: -12818970843.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,661 | INFO     | mean x: 1768101724.0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,661 | INFO     | mean y: 2513259.3985239854
[2026-01-11 06:48:58] 2026-01-11 05:47:47,661 | INFO     | intersect: 3675167333.995514
[2026-01-11 06:48:58] 2026-01-11 05:47:47,661 | INFO     | chi2: 0.09332510140759566
[2026-01-11 06:48:58] 2026-01-11 05:47:47,662 | INFO     | current memory leak: -2.08 B/s (using 271 data points, chi2=0.09)
[2026-01-11 06:48:58] 2026-01-11 05:47:47,662 | INFO     | could have reported an average CPU frequency of 2249 MHz (14 samples)
[2026-01-11 06:48:58] 2026-01-11 05:47:47,662 | INFO     | ..............................
[2026-01-11 06:48:58] 2026-01-11 05:47:47,663 | INFO     | . Timing measurements:
[2026-01-11 06:48:58] 2026-01-11 05:47:47,669 | INFO     | . get job = 0 s
[2026-01-11 06:48:58] 2026-01-11 05:47:47,669 | INFO     | . initial setup = 4 s
[2026-01-11 06:48:58] 2026-01-11 05:47:47,669 | INFO     | . payload setup = 154 s
[2026-01-11 06:48:58] 2026-01-11 05:47:47,669 | INFO     | . stage-in = 0 s
[2026-01-11 06:48:58] 2026-01-11 05:47:47,669 | INFO     | . payload execution = 19469 s
[2026-01-11 06:48:58] 2026-01-11 05:47:47,669 | INFO     | . stage-out = 4 s
[2026-01-11 06:48:58] 2026-01-11 05:47:47,669 | INFO     | . log creation = 2 s
[2026-01-11 06:48:58] 2026-01-11 05:47:47,670 | INFO     | ..............................
[2026-01-11 06:48:58] 2026-01-11 05:47:47,834 | INFO     | 
[2026-01-11 06:48:58] 2026-01-11 05:47:47,834 | INFO     | job summary report
[2026-01-11 06:48:58] 2026-01-11 05:47:47,834 | INFO     | --------------------------------------------------
[2026-01-11 06:48:58] 2026-01-11 05:47:47,834 | INFO     | PanDA job id: 6963161294
[2026-01-11 06:48:58] 2026-01-11 05:47:47,834 | INFO     | task id: 47898826
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | errors: (none)
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | pilot state: finished 
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | transexitcode: 0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | exeerrorcode: 0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | exeerrordiag: 
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | exitcode: 0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | exitmsg: OK
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | cpuconsumptiontime: 72652 s
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | nevents: 400
[2026-01-11 06:48:58] 2026-01-11 05:47:47,835 | INFO     | neventsw: 0
[2026-01-11 06:48:58] 2026-01-11 05:47:47,836 | INFO     | pid: 8046
[2026-01-11 06:48:58] 2026-01-11 05:47:47,836 | INFO     | pgrp: 8046
[2026-01-11 06:48:58] 2026-01-11 05:47:47,836 | INFO     | corecount: 8
[2026-01-11 06:48:58] 2026-01-11 05:47:47,836 | INFO     | event service: False
[2026-01-11 06:48:58] 2026-01-11 05:47:47,836 | INFO     | sizes: {0: 2283143, 1: 2283828, 2: 2284027, 13: 2284027, 23: 2284083, 34: 2284111, 45: 2284267, 55: 2284295, 66: 2284323, 77: 2284351, 87: 2284407, 98: 2284715, 10
[2026-01-11 06:48:58] 2026-01-11 05:47:47,836 | INFO     | --------------------------------------------------
[2026-01-11 06:48:58] 2026-01-11 05:47:47,836 | INFO     | 
[2026-01-11 06:48:58] 2026-01-11 05:47:47,836 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-01-11 06:48:58] 2026-01-11 05:47:47,902 | INFO     | time since job start (19955s) is within the limit (349056.0s)
[2026-01-11 06:48:58] 2026-01-11 05:47:48,406 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,406 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,407 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,407 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,407 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,407 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,407 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,407 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,407 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,407 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,407 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,408 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,408 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,408 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,408 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,408 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,408 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,408 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 06:48:58] 2026-01-11 05:47:48,408 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,408 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 06:48:58] 2026-01-11 05:47:48,408 | INFO     | job 6963161294 has completed (purged errors)
[2026-01-11 06:48:58] 2026-01-11 05:47:48,409 | INFO     | overall cleanup function is called
[2026-01-11 06:48:58] 2026-01-11 05:47:49,418 | INFO     | --- collectZombieJob: --- 10, [8046]
[2026-01-11 06:48:58] 2026-01-11 05:47:49,418 | INFO     | zombie collector waiting for pid 8046
[2026-01-11 06:48:58] 2026-01-11 05:47:49,418 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 06:48:58] 2026-01-11 05:47:49,418 | INFO     | collected zombie processes
[2026-01-11 06:48:58] 2026-01-11 05:47:49,418 | INFO     | will attempt to kill all subprocesses of pid=8046
[2026-01-11 06:48:58] 2026-01-11 05:47:49,490 | INFO     | process IDs to be killed: [8046] (in reverse order)
[2026-01-11 06:48:58] 2026-01-11 05:47:50,412 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 06:48:58] 2026-01-11 05:47:50,413 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 06:48:58] 2026-01-11 05:47:50,415 | INFO     | did not find any defunct processes belonging to 8046
[2026-01-11 06:48:58] 2026-01-11 05:47:50,417 | INFO     | did not find any defunct processes belonging to 8046
[2026-01-11 06:48:58] 2026-01-11 05:47:50,417 | INFO     | ready for new job
[2026-01-11 06:48:58] 2026-01-11 05:47:50,417 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 06:48:58] 2026-01-11 05:47:50,419 | INFO     | ***************************************
[2026-01-11 06:48:58] 2026-01-11 05:47:50,420 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 06:48:58] 2026-01-11 05:47:50,420 | INFO     | ***************************************
[2026-01-11 06:48:58] 2026-01-11 05:47:50,420 | INFO     | 
[2026-01-11 06:48:58] 2026-01-11 05:47:50,421 | INFO     | pilot is running in a VM
[2026-01-11 06:48:58] 2026-01-11 05:47:50,421 | INFO     | architecture information:
[2026-01-11 06:48:58] 2026-01-11 05:47:50,428 | INFO     | executing command: cat /etc/os-release
[2026-01-11 06:48:58] 2026-01-11 05:47:50,692 | INFO     | cat /etc/os-release:
[2026-01-11 06:48:58] NAME="CentOS Linux"
[2026-01-11 06:48:58] VERSION="7 (Core)"
[2026-01-11 06:48:58] ID="centos"
[2026-01-11 06:48:58] ID_LIKE="rhel fedora"
[2026-01-11 06:48:58] VERSION_ID="7"
[2026-01-11 06:48:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 06:48:58] ANSI_COLOR="0;31"
[2026-01-11 06:48:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 06:48:58] HOME_URL="https://www.centos.org/"
[2026-01-11 06:48:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 06:48:58] 
[2026-01-11 06:48:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 06:48:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 06:48:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 06:48:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 06:48:58] 
[2026-01-11 06:48:58] 2026-01-11 05:47:50,692 | INFO     | ***************************************
[2026-01-11 06:48:58] 2026-01-11 05:47:51,196 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-01-11 06:48:58] 2026-01-11 05:47:51,430 | INFO     | sufficient remaining disk space (497179164672 B)
[2026-01-11 06:48:58] 2026-01-11 05:47:51,430 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 06:48:58] 2026-01-11 05:47:51,430 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 06:48:58] 2026-01-11 05:47:51,430 | INFO     | update_server=False
[2026-01-11 06:48:58] 2026-01-11 05:47:51,431 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 06:48:58] 2026-01-11 05:47:51,738 | INFO     | all job control threads have been joined
[2026-01-11 06:48:58] 2026-01-11 05:47:51,862 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-11 06:48:58] 2026-01-11 05:47:51,862 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-11 06:48:58] 2026-01-11 05:47:51,862 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:48:58] 2026-01-11 05:47:51,862 | INFO     | will abort loop
[2026-01-11 06:48:58] 2026-01-11 05:47:52,149 | INFO     | all data control threads have been joined
[2026-01-11 06:48:58] 2026-01-11 05:47:52,437 | INFO     | [job] retrieve thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:52,548 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 06:48:58] 2026-01-11 05:47:52,555 | INFO     | [job] validate thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:52,744 | INFO     | [job] control thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:52,799 | INFO     | [payload] validate_post thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:52,843 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:48:58] 2026-01-11 05:47:52,868 | INFO     | [job] job monitor thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:52,942 | INFO     | all payload control threads have been joined
[2026-01-11 06:48:58] 2026-01-11 05:47:53,040 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:53,158 | INFO     | [data] control thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:53,367 | INFO     | [data] copytool_in thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:53,419 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:53,619 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 06:48:58] 2026-01-11 05:47:53,673 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:53,852 | INFO     | [job] queue monitor thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:53,876 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:53,922 | INFO     | [payload] failed_post thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:53,948 | INFO     | [payload] control thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:54,555 | INFO     | [data] copytool_out thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:47:57,628 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 06:48:58] 2026-01-11 05:48:21,018 | INFO     | PID=1565 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-11 06:48:58] 2026-01-11 05:48:21,018 | INFO     | .. there are 2 such processes running
[2026-01-11 06:48:58] 2026-01-11 05:48:21,018 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 06:48:58] 2026-01-11 05:48:21,018 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 06:48:58] 2026-01-11 05:48:21,018 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 06:48:58] 2026-01-11 05:48:46,488 | INFO     | [monitor] cgroup control has ended
[2026-01-11 06:48:58] 2026-01-11 05:48:47,291 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931601737536)>', '<ExcThread(monitor, started 139931150173952)>']
[2026-01-11 06:48:58] 2026-01-11 05:48:48,180 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 06:48:58] 2026-01-11 05:48:48,180 | INFO     | [monitor] control thread has ended
[2026-01-11 06:48:58] 2026-01-11 05:48:52,317 | INFO     | all workflow threads have been joined
[2026-01-11 06:48:58] 2026-01-11 05:48:52,317 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 06:48:58] 2026-01-11 05:48:52,317 | INFO     | traces error code: 0
[2026-01-11 06:48:58] 2026-01-11 05:48:52,318 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 06:48:58] 2026-01-11 05:48:52,686 [wrapper] ==== pilot stdout END ====
[2026-01-11 06:48:58] 2026-01-11 05:48:52,793 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 06:48:58] 2026-01-11 05:48:52,884 [wrapper] pilotpid: 1565
[2026-01-11 06:48:58] 2026-01-11 05:48:52,994 [wrapper] Pilot exit status: 0
[2026-01-11 06:48:58] 2026-01-11 05:48:53,503 [wrapper] pandaids: 6963161294
[2026-01-11 06:48:58] 2026-01-11 05:48:54,702 [wrapper] cleanup supervisor_pilot  6016 1566
[2026-01-11 06:48:58] 2026-01-11 05:48:54,805 [wrapper] Test setup, not cleaning
[2026-01-11 06:48:58] 2026-01-11 05:48:54,895 [wrapper] apfmon messages muted
[2026-01-11 06:48:58] 2026-01-11 05:48:54,995 [wrapper] ==== wrapper stdout END ====
[2026-01-11 06:48:58] 2026-01-11 05:48:55,100 [wrapper] ==== wrapper stderr END ====
[2026-01-11 06:48:58]  *** Error codes and diagnostics ***
[2026-01-11 06:48:58]     "exeErrorCode": 0,
[2026-01-11 06:48:58]     "exeErrorDiag": "",
[2026-01-11 06:48:58]     "pilotErrorCode": 0,
[2026-01-11 06:48:58]     "pilotErrorDiag": "",
[2026-01-11 06:48:58]  *** Listing of results directory ***
[2026-01-11 06:48:58] total 445876
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc    597923 Jan  7 14:01 pilot3.tar.gz
[2026-01-11 06:48:58] -rwx------. 1 boinc boinc     36322 Jan  8 22:49 runpilot2-wrapper.sh
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc      5112 Jan  8 22:51 queuedata.json
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc       100 Jan 11 01:10 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 06:48:58] -rwxr-xr-x. 1 boinc boinc      7986 Jan 11 01:10 run_atlas
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc       105 Jan 11 01:10 job.xml
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc      6391 Jan 11 01:10 init_data.xml
[2026-01-11 06:48:58] -rw-r--r--. 2 boinc boinc 225013881 Jan 11 01:10 EVNT.47898824._001276.pool.root.1
[2026-01-11 06:48:58] -rw-r--r--. 2 boinc boinc     15847 Jan 11 01:10 start_atlas.sh
[2026-01-11 06:48:58] drwxrwx--x. 2 boinc boinc        68 Jan 11 01:10 shared
[2026-01-11 06:48:58] -rw-r--r--. 2 boinc boinc    610541 Jan 11 01:10 input.tar.gz
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc         0 Jan 11 01:10 boinc_lockfile
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc      2520 Jan 11 01:11 pandaJob.out
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc    989548 Jan 11 01:15 agis_schedconf.cvmfs.json
[2026-01-11 06:48:58] drwx------. 7 boinc boinc      4096 Jan 11 01:15 pilot3
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc 221274321 Jan 11 06:44 HITS.47898826._033003.pool.root.1
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc       531 Jan 11 06:44 boinc_task_state.xml
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc      1013 Jan 11 06:45 memory_monitor_summary.json
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc   1516240 Jan 11 06:45 agis_ddmendpoints.agis.ALL.json
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc    518098 Jan 11 06:45 log.47898826._033003.job.log.tgz.1
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc        95 Jan 11 06:47 pilot_heartbeat.json
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc      7780 Jan 11 06:47 heartbeat.json
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc      5069 Jan 11 06:48 pilotlog.txt
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc      8192 Jan 11 06:48 boinc_mmap_file
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc        28 Jan 11 06:48 wrapper_checkpoint.txt
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc   2655060 Jan 11 06:48 log.47898826._033003.job.log.1
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc       357 Jan 11 06:48 output.list
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc       620 Jan 11 06:48 runtime_log
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc   3194880 Jan 11 06:48 result.tar.gz
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc      8817 Jan 11 06:48 runtime_log.err
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc       657 Jan 11 06:48 oqzNDmX3Cy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJOgKDmzRpWAo.diag
[2026-01-11 06:48:58] -rw-r--r--. 1 boinc boinc     20662 Jan 11 06:48 stderr.txt
[2026-01-11 06:48:58] HITS file was successfully produced:
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc 221274321 Jan 11 06:44 shared/HITS.pool.root.1
[2026-01-11 06:48:58]  *** Contents of shared directory: ***
[2026-01-11 06:48:58] total 439572
[2026-01-11 06:48:58] -rw-r--r--. 2 boinc boinc 225013881 Jan 11 01:10 ATLAS.root_0
[2026-01-11 06:48:58] -rw-r--r--. 2 boinc boinc     15847 Jan 11 01:10 start_atlas.sh
[2026-01-11 06:48:58] -rw-r--r--. 2 boinc boinc    610541 Jan 11 01:10 input.tar.gz
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc 221274321 Jan 11 06:44 HITS.pool.root.1
[2026-01-11 06:48:58] -rw-------. 1 boinc boinc   3194880 Jan 11 06:48 result.tar.gz
06:49:00 (30222): run_atlas exited; CPU time 72828.304933
06:49:00 (30222): called boinc_finish(0)

</stderr_txt>
]]>

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