Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:54:30 (708903): wrapper (7.7.26015): starting
11:54:30 (708903): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 11:54:30] Arguments: --nthreads 3
[2026-01-10 11:54:30] Threads: 3
[2026-01-10 11:54:30] Checking for CVMFS
[2026-01-10 11:54:30] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:54:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:54:30] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:54:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:54:30] 2.9.2.0 4092385 3652 73644 154976 3 57 22888319 36864000 0 130560 0 2116273 99.986 135914 3274 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 11:54:30] CVMFS is ok
[2026-01-10 11:54:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 11:54:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 11:54:30] Further information can be found at the LHC@home message board.
[2026-01-10 11:54:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:54:30] Checking for apptainer binary...
[2026-01-10 11:54:30] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:54:30] Running /usr/bin/apptainer --version
[2026-01-10 11:54:30] apptainer version 1.4.1-1.1
[2026-01-10 11:54:30] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:54:30] atlasA223a
[2026-01-10 11:54:30] apptainer works
[2026-01-10 11:54:30] Set ATHENA_PROC_NUMBER=3
[2026-01-10 11:54:30] Set ATHENA_CORE_NUMBER=3
[2026-01-10 11:54:30] Starting ATLAS job with PandaID=6963156707
[2026-01-10 11:54:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 14:00:58]  *** The last 200 lines of the pilot log: ***
[2026-01-10 14:00:58] 2026-01-10 13:00:38,618 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 14:00:58] 2026-01-10 13:00:38,618 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 14:00:58] 2026-01-10 13:00:38,618 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 14:00:58] 2026-01-10 13:00:38,618 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 14:00:58] 2026-01-10 13:00:38,618 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 14:00:58] 2026-01-10 13:00:38,618 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 14:00:58] 2026-01-10 13:00:38,618 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 14:00:58] 2026-01-10 13:00:38,618 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 14:00:58] 2026-01-10 13:00:38,618 | INFO     | job 6963156707 has completed (purged errors)
[2026-01-10 14:00:58] 2026-01-10 13:00:38,618 | INFO     | overall cleanup function is called
[2026-01-10 14:00:58] 2026-01-10 13:00:39,624 | INFO     | --- collectZombieJob: --- 10, [719098]
[2026-01-10 14:00:58] 2026-01-10 13:00:39,625 | INFO     | zombie collector waiting for pid 719098
[2026-01-10 14:00:58] 2026-01-10 13:00:39,625 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 14:00:58] 2026-01-10 13:00:39,625 | INFO     | collected zombie processes
[2026-01-10 14:00:58] 2026-01-10 13:00:39,625 | INFO     | will attempt to kill all subprocesses of pid=719098
[2026-01-10 14:00:58] 2026-01-10 13:00:39,665 | INFO     | process IDs to be killed: [719098] (in reverse order)
[2026-01-10 14:00:58] 2026-01-10 13:00:39,691 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 14:00:58] 2026-01-10 13:00:39,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 14:00:58] 2026-01-10 13:00:39,692 | INFO     | did not find any defunct processes belonging to 719098
[2026-01-10 14:00:58] 2026-01-10 13:00:39,693 | INFO     | did not find any defunct processes belonging to 719098
[2026-01-10 14:00:58] 2026-01-10 13:00:39,693 | INFO     | ready for new job
[2026-01-10 14:00:58] 2026-01-10 13:00:39,693 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 14:00:58] 2026-01-10 13:00:39,694 | INFO     | ***************************************
[2026-01-10 14:00:58] 2026-01-10 13:00:39,694 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 14:00:58] 2026-01-10 13:00:39,694 | INFO     | ***************************************
[2026-01-10 14:00:58] 2026-01-10 13:00:39,694 | INFO     | 
[2026-01-10 14:00:58] 2026-01-10 13:00:39,694 | INFO     | architecture information:
[2026-01-10 14:00:58] 2026-01-10 13:00:39,695 | INFO     | executing command: cat /etc/os-release
[2026-01-10 14:00:58] 2026-01-10 13:00:39,704 | INFO     | cat /etc/os-release:
[2026-01-10 14:00:58] NAME="CentOS Linux"
[2026-01-10 14:00:58] VERSION="7 (Core)"
[2026-01-10 14:00:58] ID="centos"
[2026-01-10 14:00:58] ID_LIKE="rhel fedora"
[2026-01-10 14:00:58] VERSION_ID="7"
[2026-01-10 14:00:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 14:00:58] ANSI_COLOR="0;31"
[2026-01-10 14:00:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 14:00:58] HOME_URL="https://www.centos.org/"
[2026-01-10 14:00:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 14:00:58] 
[2026-01-10 14:00:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 14:00:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 14:00:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 14:00:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 14:00:58] 
[2026-01-10 14:00:58] 2026-01-10 13:00:39,704 | INFO     | ***************************************
[2026-01-10 14:00:58] 2026-01-10 13:00:40,208 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 14:00:58] 2026-01-10 13:00:40,221 | INFO     | sufficient remaining disk space (338330386432 B)
[2026-01-10 14:00:58] 2026-01-10 13:00:40,222 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 14:00:58] 2026-01-10 13:00:40,222 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 14:00:58] 2026-01-10 13:00:40,222 | INFO     | update_server=False
[2026-01-10 14:00:58] 2026-01-10 13:00:40,222 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 14:00:58] 2026-01-10 13:00:40,222 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:00:58] 2026-01-10 13:00:40,222 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-01-10 14:00:58] 2026-01-10 13:00:40,222 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 14:00:58] 2026-01-10 13:00:40,222 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 14:00:58] 2026-01-10 13:00:40,222 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 14:00:58] 2026-01-10 13:00:40,272 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 14:00:58] 2026-01-10 13:00:40,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 14:00:58] 2026-01-10 13:00:40,570 | INFO     | all job control threads have been joined
[2026-01-10 14:00:58] 2026-01-10 13:00:40,702 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 14:00:58] 2026-01-10 13:00:40,702 | INFO     | aborting loop
[2026-01-10 14:00:58] 2026-01-10 13:00:40,954 | INFO     | all payload control threads have been joined
[2026-01-10 14:00:58] 2026-01-10 13:00:41,173 | INFO     | all data control threads have been joined
[2026-01-10 14:00:58] 2026-01-10 13:00:41,228 | INFO     | [job] queue monitor thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:41,229 | INFO     | [job] retrieve thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:41,266 | INFO     | [payload] failed_post thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:41,576 | INFO     | [job] control thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:41,708 | INFO     | [job] job monitor thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:41,780 | INFO     | [data] copytool_in thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:41,960 | INFO     | [payload] control thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:42,046 | INFO     | [payload] validate_post thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:42,179 | INFO     | [data] control thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:42,205 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:42,278 | INFO     | [data] copytool_out thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:42,313 | INFO     | [job] validate thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:42,393 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:42,722 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:44,302 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:50,331 | INFO     | job.realtimelogging is not enabled
[2026-01-10 14:00:58] 2026-01-10 13:00:51,337 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 14:00:58] 2026-01-10 13:00:51,975 | INFO     | [monitor] cgroup control has ended
[2026-01-10 14:00:58] 2026-01-10 13:00:53,444 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140239001671488)>', '<ExcThread(monitor, started 140238357767936)>']
[2026-01-10 14:00:58] 2026-01-10 13:00:54,298 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 14:00:58] 2026-01-10 13:00:54,299 | INFO     | [monitor] control thread has ended
[2026-01-10 14:00:58] 2026-01-10 13:00:58,470 | INFO     | all workflow threads have been joined
[2026-01-10 14:00:58] 2026-01-10 13:00:58,470 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 14:00:58] 2026-01-10 13:00:58,471 | INFO     | traces error code: 0
[2026-01-10 14:00:58] 2026-01-10 13:00:58,471 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 14:00:58] 2026-01-10 13:00:58,551 [wrapper] ==== pilot stdout END ====
[2026-01-10 14:00:58] 2026-01-10 13:00:58,554 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 14:00:58] 2026-01-10 13:00:58,556 [wrapper] pilotpid: 712639
[2026-01-10 14:00:58] 2026-01-10 13:00:58,559 [wrapper] Pilot exit status: 0
[2026-01-10 14:00:58] 2026-01-10 13:00:58,567 [wrapper] pandaids: 6963156707
[2026-01-10 14:00:58] 2026-01-10 13:00:58,584 [wrapper] cleanup supervisor_pilot  734066 712640
[2026-01-10 14:00:58] 2026-01-10 13:00:58,587 [wrapper] Test setup, not cleaning
[2026-01-10 14:00:58] 2026-01-10 13:00:58,589 [wrapper] apfmon messages muted
[2026-01-10 14:00:58] 2026-01-10 13:00:58,592 [wrapper] ==== wrapper stdout END ====
[2026-01-10 14:00:58] 2026-01-10 13:00:58,594 [wrapper] ==== wrapper stderr END ====
[2026-01-10 14:00:58]  *** Error codes and diagnostics ***
[2026-01-10 14:00:58]     "exeErrorCode": 0,
[2026-01-10 14:00:58]     "exeErrorDiag": "",
[2026-01-10 14:00:58]     "pilotErrorCode": 0,
[2026-01-10 14:00:58]     "pilotErrorDiag": "",
[2026-01-10 14:00:58]  *** Listing of results directory ***
[2026-01-10 14:00:58] total 437632
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-10 14:00:58] -rwx------ 1 boinc boinc     36322 Jan  8 22:48 runpilot2-wrapper.sh
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc      5112 Jan  8 22:50 queuedata.json
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc       100 Jan 10 11:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 14:00:58] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 11:54 run_atlas
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc       105 Jan 10 11:54 job.xml
[2026-01-10 14:00:58] -rw-r--r-- 2 boinc boinc 226987995 Jan 10 11:54 EVNT.47898824._001210.pool.root.1
[2026-01-10 14:00:58] -rw-r--r-- 2 boinc boinc    592405 Jan 10 11:54 input.tar.gz
[2026-01-10 14:00:58] -rw-r--r-- 2 boinc boinc     15847 Jan 10 11:54 start_atlas.sh
[2026-01-10 14:00:58] drwxrwx--x 2 boinc boinc      4096 Jan 10 11:54 shared
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc         0 Jan 10 11:54 boinc_setup_complete
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc      6198 Jan 10 11:54 init_data.xml
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc         0 Jan 10 11:54 boinc_lockfile
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc      2520 Jan 10 11:54 pandaJob.out
[2026-01-10 14:00:58] -rw------- 1 boinc boinc    989548 Jan 10 11:54 agis_schedconf.cvmfs.json
[2026-01-10 14:00:58] -rw------- 1 boinc boinc   1516240 Jan 10 11:54 agis_ddmendpoints.agis.ALL.json
[2026-01-10 14:00:58] drwx------ 5 boinc boinc      4096 Jan 10 11:54 pilot3
[2026-01-10 14:00:58] -rw------- 1 boinc boinc 214497524 Jan 10 14:00 HITS.47898826._031856.pool.root.1
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc       530 Jan 10 14:00 boinc_task_state.xml
[2026-01-10 14:00:58] -rw------- 1 boinc boinc        95 Jan 10 14:00 pilot_heartbeat.json
[2026-01-10 14:00:58] -rw------- 1 boinc boinc      1019 Jan 10 14:00 memory_monitor_summary.json
[2026-01-10 14:00:58] -rw------- 1 boinc boinc    288091 Jan 10 14:00 log.47898826._031856.job.log.tgz.1
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc        27 Jan 10 14:00 wrapper_checkpoint.txt
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc      8192 Jan 10 14:00 boinc_mmap_file
[2026-01-10 14:00:58] -rw------- 1 boinc boinc      7759 Jan 10 14:00 heartbeat.json
[2026-01-10 14:00:58] -rw------- 1 boinc boinc      4628 Jan 10 14:00 pilotlog.txt
[2026-01-10 14:00:58] -rw------- 1 boinc boinc   1088501 Jan 10 14:00 log.47898826._031856.job.log.1
[2026-01-10 14:00:58] -rw------- 1 boinc boinc       357 Jan 10 14:00 output.list
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc       620 Jan 10 14:00 runtime_log
[2026-01-10 14:00:58] -rw------- 1 boinc boinc   1392640 Jan 10 14:00 result.tar.gz
[2026-01-10 14:00:58] -rw------- 1 boinc boinc       663 Jan 10 14:00 sLAODmL3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmFblKDmyH0KVo.diag
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc      8917 Jan 10 14:00 runtime_log.err
[2026-01-10 14:00:58] -rw-r--r-- 1 boinc boinc     11630 Jan 10 14:00 stderr.txt
[2026-01-10 14:00:58] HITS file was successfully produced:
[2026-01-10 14:00:58] -rw------- 1 boinc boinc 214497524 Jan 10 14:00 shared/HITS.pool.root.1
[2026-01-10 14:00:58]  *** Contents of shared directory: ***
[2026-01-10 14:00:58] total 433104
[2026-01-10 14:00:58] -rw-r--r-- 2 boinc boinc 226987995 Jan 10 11:54 ATLAS.root_0
[2026-01-10 14:00:58] -rw-r--r-- 2 boinc boinc    592405 Jan 10 11:54 input.tar.gz
[2026-01-10 14:00:58] -rw-r--r-- 2 boinc boinc     15847 Jan 10 11:54 start_atlas.sh
[2026-01-10 14:00:58] -rw------- 1 boinc boinc 214497524 Jan 10 14:00 HITS.pool.root.1
[2026-01-10 14:00:58] -rw------- 1 boinc boinc   1392640 Jan 10 14:00 result.tar.gz
14:01:00 (708903): run_atlas exited; CPU time 21886.482234
14:01:00 (708903): called boinc_finish(0)

</stderr_txt>
]]>

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