Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:57:12 (2857994): wrapper (7.7.26015): starting
17:57:12 (2857994): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 17:57:12] Arguments: --nthreads 8
[2026-01-09 17:57:12] Threads: 8
[2026-01-09 17:57:12] Checking for CVMFS
[2026-01-09 17:57:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 17:57:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 17:57:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 17:57:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 17:57:15] 2.13.3.0 22787 93988 175556 154959 2 537 31158337 40960001 36327 16776704 0 1121723837 99.714 829391585 49863 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 17:57:15] CVMFS is ok
[2026-01-09 17:57:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 17:57:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 17:57:15] Further information can be found at the LHC@home message board.
[2026-01-09 17:57:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 17:57:15] Checking for apptainer binary...
[2026-01-09 17:57:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 17:57:15] Running /usr/bin/apptainer --version
[2026-01-09 17:57:15] apptainer version 1.4.5-2.el9
[2026-01-09 17:57:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 17:57:16] c8-6-11.aglt2.org
[2026-01-09 17:57:16] apptainer works
[2026-01-09 17:57:16] Set ATHENA_PROC_NUMBER=8
[2026-01-09 17:57:16] Set ATHENA_CORE_NUMBER=8
[2026-01-09 17:57:16] Starting ATLAS job with PandaID=6963186552
[2026-01-09 17:57:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 20:42:05]  *** The last 200 lines of the pilot log: ***
[2026-01-09 20:42:05] 2026-01-10 01:40:54,774 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:42:05] 2026-01-10 01:40:57,295 | INFO     | monitor loop #613: job 0:6963186552 is in state 'finished'
[2026-01-09 20:42:05] 2026-01-10 01:40:57,296 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:42:05] 2026-01-10 01:40:58,174 | INFO     | PID=2870948 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:42:05] 2026-01-10 01:40:58,174 | INFO     | .. there are 38 such processes running
[2026-01-09 20:42:05] 2026-01-10 01:40:59,175 | INFO     | time since job start (9738s) is within the limit (349056.0s)
[2026-01-09 20:42:05] 2026-01-10 01:40:59,802 | INFO     | monitor loop #614: job 0:6963186552 is in state 'finished'
[2026-01-09 20:42:05] 2026-01-10 01:40:59,802 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,197 | INFO     | time since job start (9740s) is within the limit (349056.0s)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,296 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 20:42:05] 2026-01-10 01:41:01,316 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3800.1136484374983
[2026-01-09 20:42:05] 2026-01-10 01:41:01,385 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963186552/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,386 | INFO     | extracted standard info from prmon json
[2026-01-09 20:42:05] 2026-01-10 01:41:01,386 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 20:42:05] 2026-01-10 01:41:01,386 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 20:42:05] 2026-01-10 01:41:01,386 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 20:42:05] 2026-01-10 01:41:01,386 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 20:42:05] 2026-01-10 01:41:01,412 | INFO     | fitting pss+swap vs Time
[2026-01-09 20:42:05] 2026-01-10 01:41:01,412 | INFO     | sum of square deviations: 1199970186.3694322
[2026-01-09 20:42:05] 2026-01-10 01:41:01,413 | INFO     | sum of deviations: 45094936992.019135
[2026-01-09 20:42:05] 2026-01-10 01:41:01,413 | INFO     | mean x: 1768004427.1019108
[2026-01-09 20:42:05] 2026-01-10 01:41:01,413 | INFO     | mean y: 2417554.9363057325
[2026-01-09 20:42:05] 2026-01-10 01:41:01,413 | INFO     | intersect: -66439273369.89627
[2026-01-09 20:42:05] 2026-01-10 01:41:01,413 | INFO     | chi2: 4.524413917255799
[2026-01-09 20:42:05] 2026-01-10 01:41:01,413 | INFO     | sum of square deviations: 1088940426.3157918
[2026-01-09 20:42:05] 2026-01-10 01:41:01,414 | INFO     | sum of deviations: 52990651671.76317
[2026-01-09 20:42:05] 2026-01-10 01:41:01,414 | INFO     | mean x: 1768004274.6052632
[2026-01-09 20:42:05] 2026-01-10 01:41:01,414 | INFO     | mean y: 2428054.2960526315
[2026-01-09 20:42:05] 2026-01-10 01:41:01,414 | INFO     | intersect: -86033223121.56218
[2026-01-09 20:42:05] 2026-01-10 01:41:01,414 | INFO     | chi2: 3.8777588899287667
[2026-01-09 20:42:05] 2026-01-10 01:41:01,414 | INFO     | current chi2=3.8777588899287667 (change=14.292570024611043 %)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,414 | INFO     | right removable region: 151
[2026-01-09 20:42:05] 2026-01-10 01:41:01,414 | INFO     | sum of square deviations: 1088930666.3157918
[2026-01-09 20:42:05] 2026-01-10 01:41:01,414 | INFO     | sum of deviations: -2316484458.1052628
[2026-01-09 20:42:05] 2026-01-10 01:41:01,425 | INFO     | mean x: 1768004579.6052632
[2026-01-09 20:42:05] 2026-01-10 01:41:01,425 | INFO     | mean y: 2482467.3815789474
[2026-01-09 20:42:05] 2026-01-10 01:41:01,425 | INFO     | intersect: 3763562265.3921556
[2026-01-09 20:42:05] 2026-01-10 01:41:01,425 | INFO     | chi2: 0.8041924472005815
[2026-01-09 20:42:05] 2026-01-10 01:41:01,425 | INFO     | current chi2=0.8041924472005815 (change=82.22548904879265 %)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,425 | INFO     | sum of square deviations: 984970439.4693898
[2026-01-09 20:42:05] 2026-01-10 01:41:01,426 | INFO     | sum of deviations: -7185969084.530613
[2026-01-09 20:42:05] 2026-01-10 01:41:01,426 | INFO     | mean x: 1768004732.1020408
[2026-01-09 20:42:05] 2026-01-10 01:41:01,426 | INFO     | mean y: 2489462.102040816
[2026-01-09 20:42:05] 2026-01-10 01:41:01,426 | INFO     | intersect: 12901178434.974436
[2026-01-09 20:42:05] 2026-01-10 01:41:01,426 | INFO     | chi2: 0.7180157120624147
[2026-01-09 20:42:05] 2026-01-10 01:41:01,426 | INFO     | current chi2=0.7180157120624147 (change=10.715934405769497 %)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,426 | INFO     | left removable region: 20
[2026-01-09 20:42:05] 2026-01-10 01:41:01,426 | INFO     | sum of square deviations: 697080451.2824409
[2026-01-09 20:42:05] 2026-01-10 01:41:01,427 | INFO     | sum of deviations: 1753572869.5877862
[2026-01-09 20:42:05] 2026-01-10 01:41:01,427 | INFO     | mean x: 1768004854.1145039
[2026-01-09 20:42:05] 2026-01-10 01:41:01,427 | INFO     | mean y: 2503353.427480916
[2026-01-09 20:42:05] 2026-01-10 01:41:01,427 | INFO     | intersect: -4445082774.932509
[2026-01-09 20:42:05] 2026-01-10 01:41:01,427 | INFO     | chi2: 0.0002207365649224044
[2026-01-09 20:42:05] 2026-01-10 01:41:01,427 | INFO     | current memory leak: 2.52 B/s (using 131 data points, chi2=0.00)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | could have reported an average CPU frequency of 3800 MHz (9 samples)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | ..............................
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | . Timing measurements:
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | . get job = 0 s
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | . initial setup = 11 s
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | . payload setup = 52 s
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | . stage-in = 0 s
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | . payload execution = 9570 s
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | . stage-out = 3 s
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | . log creation = 0 s
[2026-01-09 20:42:05] 2026-01-10 01:41:01,449 | INFO     | ..............................
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | 
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | job summary report
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | --------------------------------------------------
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | PanDA job id: 6963186552
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | task id: 47898826
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | errors: (none)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | pilot state: finished 
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | transexitcode: 0
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | exeerrorcode: 0
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | exeerrordiag: 
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | exitcode: 0
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | exitmsg: OK
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | cpuconsumptiontime: 30821 s
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | nevents: 400
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | neventsw: 0
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | pid: 2886540
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | pgrp: 2886540
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | corecount: 8
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | event service: False
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | sizes: {0: 2283743, 1: 2283998, 2: 2284026, 12: 2284026, 23: 2284054, 31: 2284344, 34: 2284500, 9627: 2312889, 9631: 2321887, 9634: 2321943, 9673: 2322201}
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | --------------------------------------------------
[2026-01-09 20:42:05] 2026-01-10 01:41:01,720 | INFO     | 
[2026-01-09 20:42:05] 2026-01-10 01:41:01,721 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 20:42:05] 2026-01-10 01:41:01,764 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,764 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,764 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,764 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,764 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,764 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,764 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,764 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,764 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,764 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | job 6963186552 has completed (purged errors)
[2026-01-09 20:42:05] 2026-01-10 01:41:01,765 | INFO     | overall cleanup function is called
[2026-01-09 20:42:05] 2026-01-10 01:41:02,780 | INFO     | --- collectZombieJob: --- 10, [2886540]
[2026-01-09 20:42:05] 2026-01-10 01:41:02,780 | INFO     | zombie collector waiting for pid 2886540
[2026-01-09 20:42:05] 2026-01-10 01:41:02,780 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 20:42:05] 2026-01-10 01:41:02,780 | INFO     | collected zombie processes
[2026-01-09 20:42:05] 2026-01-10 01:41:02,780 | INFO     | will attempt to kill all subprocesses of pid=2886540
[2026-01-09 20:42:05] 2026-01-10 01:41:04,479 | INFO     | process IDs to be killed: [2886540] (in reverse order)
[2026-01-09 20:42:05] 2026-01-10 01:41:04,902 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 20:42:05] 2026-01-10 01:41:04,902 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 20:42:05] 2026-01-10 01:41:04,953 | INFO     | did not find any defunct processes belonging to 2886540
[2026-01-09 20:42:05] 2026-01-10 01:41:05,026 | INFO     | did not find any defunct processes belonging to 2886540
[2026-01-09 20:42:05] 2026-01-10 01:41:05,026 | INFO     | ready for new job
[2026-01-09 20:42:05] 2026-01-10 01:41:05,026 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 20:42:05] 2026-01-10 01:41:05,028 | INFO     | ***************************************
[2026-01-09 20:42:05] 2026-01-10 01:41:05,028 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 20:42:05] 2026-01-10 01:41:05,028 | INFO     | ***************************************
[2026-01-09 20:42:05] 2026-01-10 01:41:05,028 | INFO     | 
[2026-01-09 20:42:05] 2026-01-10 01:41:05,039 | INFO     | architecture information:
[2026-01-09 20:42:05] 2026-01-10 01:41:05,040 | INFO     | executing command: cat /etc/os-release
[2026-01-09 20:42:05] 2026-01-10 01:41:05,116 | INFO     | cat /etc/os-release:
[2026-01-09 20:42:05] NAME="CentOS Linux"
[2026-01-09 20:42:05] VERSION="7 (Core)"
[2026-01-09 20:42:05] ID="centos"
[2026-01-09 20:42:05] ID_LIKE="rhel fedora"
[2026-01-09 20:42:05] VERSION_ID="7"
[2026-01-09 20:42:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 20:42:05] ANSI_COLOR="0;31"
[2026-01-09 20:42:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 20:42:05] HOME_URL="https://www.centos.org/"
[2026-01-09 20:42:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 20:42:05] 
[2026-01-09 20:42:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 20:42:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 20:42:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 20:42:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 20:42:05] 
[2026-01-09 20:42:05] 2026-01-10 01:41:05,116 | INFO     | ***************************************
[2026-01-09 20:42:05] 2026-01-10 01:41:05,620 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 20:42:05] 2026-01-10 01:41:05,735 | INFO     | sufficient remaining disk space (169025208320 B)
[2026-01-09 20:42:05] 2026-01-10 01:41:05,735 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 20:42:05] 2026-01-10 01:41:05,736 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 20:42:05] 2026-01-10 01:41:05,736 | INFO     | update_server=False
[2026-01-09 20:42:05] 2026-01-10 01:41:05,736 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 20:42:05] 2026-01-10 01:41:05,736 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 20:42:05] 2026-01-10 01:41:05,831 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:42:05] 2026-01-10 01:41:05,831 | INFO     | aborting loop
[2026-01-09 20:42:05] 2026-01-10 01:41:06,130 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 20:42:05] 2026-01-10 01:41:06,223 | INFO     | all data control threads have been joined
[2026-01-09 20:42:05] 2026-01-10 01:41:06,282 | INFO     | all job control threads have been joined
[2026-01-09 20:42:05] 2026-01-10 01:41:06,282 | INFO     | all payload control threads have been joined
[2026-01-09 20:42:05] 2026-01-10 01:41:06,742 | INFO     | [job] retrieve thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:06,787 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 20:42:05] 2026-01-10 01:41:06,837 | INFO     | [job] job monitor thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:06,903 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,229 | INFO     | [data] control thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,288 | INFO     | [job] control thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,288 | INFO     | [payload] control thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,451 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,451 | INFO     | [job] validate thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,509 | INFO     | [payload] validate_post thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,509 | INFO     | [payload] failed_post thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,667 | INFO     | [data] copytool_in thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,687 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,691 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:07,793 | INFO     | [job] queue monitor thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:08,137 | INFO     | [data] copytool_out thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:09,767 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 20:42:05] 2026-01-10 01:41:35,275 | INFO     | PID=2870948 has CPU usage=3.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 20:42:05] 2026-01-10 01:41:35,281 | INFO     | .. there are 38 such processes running
[2026-01-09 20:42:05] 2026-01-10 01:41:35,281 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 20:42:05] 2026-01-10 01:41:35,281 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 20:42:05] 2026-01-10 01:41:35,281 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 20:42:05] 2026-01-10 01:41:57,401 | INFO     | [monitor] cgroup control has ended
[2026-01-09 20:42:05] 2026-01-10 01:41:58,091 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140035631695680)>', '<ExcThread(monitor, started 140034917263104)>']
[2026-01-09 20:42:05] 2026-01-10 01:41:58,455 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 20:42:05] 2026-01-10 01:41:58,455 | INFO     | [monitor] control thread has ended
[2026-01-09 20:42:05] 2026-01-10 01:42:03,117 | INFO     | all workflow threads have been joined
[2026-01-09 20:42:05] 2026-01-10 01:42:03,117 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 20:42:05] 2026-01-10 01:42:03,117 | INFO     | traces error code: 0
[2026-01-09 20:42:05] 2026-01-10 01:42:03,117 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 20:42:05] 2026-01-10 01:42:04,043 [wrapper] ==== pilot stdout END ====
[2026-01-09 20:42:05] 2026-01-10 01:42:04,062 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 20:42:05] 2026-01-10 01:42:04,094 [wrapper] pilotpid: 2870948
[2026-01-09 20:42:05] 2026-01-10 01:42:04,108 [wrapper] Pilot exit status: 0
[2026-01-09 20:42:05] 2026-01-10 01:42:04,296 [wrapper] pandaids: 6963186552
[2026-01-09 20:42:05] 2026-01-10 01:42:04,463 [wrapper] cleanup supervisor_pilot 4026575 2870949
[2026-01-09 20:42:05] 2026-01-10 01:42:04,477 [wrapper] Test setup, not cleaning
[2026-01-09 20:42:05] 2026-01-10 01:42:04,488 [wrapper] apfmon messages muted
[2026-01-09 20:42:05] 2026-01-10 01:42:04,500 [wrapper] ==== wrapper stdout END ====
[2026-01-09 20:42:05] 2026-01-10 01:42:04,511 [wrapper] ==== wrapper stderr END ====
[2026-01-09 20:42:05]  *** Error codes and diagnostics ***
[2026-01-09 20:42:05]     "exeErrorCode": 0,
[2026-01-09 20:42:05]     "exeErrorDiag": "",
[2026-01-09 20:42:05]     "pilotErrorCode": 0,
[2026-01-09 20:42:05]     "pilotErrorDiag": "",
[2026-01-09 20:42:05]  *** Listing of results directory ***
[2026-01-09 20:42:05] total 441052
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas    597923 Jan  7 08:01 pilot3.tar.gz
[2026-01-09 20:42:05] -rwx------. 1 boincer umatlas     36322 Jan  8 19:58 runpilot2-wrapper.sh
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 20:01 queuedata.json
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas       100 Jan  9 17:57 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 20:42:05] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 17:57 run_atlas
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas       105 Jan  9 17:57 job.xml
[2026-01-09 20:42:05] -rw-r--r--. 2 boincer umatlas 226805407 Jan  9 17:57 EVNT.47898824._001400.pool.root.1
[2026-01-09 20:42:05] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:57 start_atlas.sh
[2026-01-09 20:42:05] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 17:57 shared
[2026-01-09 20:42:05] -rw-r--r--. 2 boincer umatlas    610539 Jan  9 17:57 input.tar.gz
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas         0 Jan  9 17:57 boinc_lockfile
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas      2519 Jan  9 17:57 pandaJob.out
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas        57 Jan  9 17:57 setup.sh.local
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas    989375 Jan  9 17:58 agis_schedconf.cvmfs.json
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas   1516240 Jan  9 17:58 agis_ddmendpoints.agis.ALL.json
[2026-01-09 20:42:05] drwx------. 7 boincer umatlas      4096 Jan  9 17:58 pilot3
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas 217621178 Jan  9 20:38 HITS.47898826._036528.pool.root.1
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas       529 Jan  9 20:39 boinc_task_state.xml
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas      1033 Jan  9 20:40 memory_monitor_summary.json
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas    382230 Jan  9 20:40 log.47898826._036528.job.log.tgz.1
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas      7172 Jan  9 20:40 init_data.xml
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas      7773 Jan  9 20:41 heartbeat.json
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas        95 Jan  9 20:41 pilot_heartbeat.json
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas      4825 Jan  9 20:42 pilotlog.txt
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas        27 Jan  9 20:42 wrapper_checkpoint.txt
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 20:42 boinc_mmap_file
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas   1244807 Jan  9 20:42 log.47898826._036528.job.log.1
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas       357 Jan  9 20:42 output.list
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas       620 Jan  9 20:42 runtime_log
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas   1648640 Jan  9 20:42 result.tar.gz
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas      9337 Jan  9 20:42 runtime_log.err
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas       652 Jan  9 20:42 csaNDmN0Fy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWulKDmZXaPUo.diag
[2026-01-09 20:42:05] -rw-r--r--. 1 boincer umatlas     21537 Jan  9 20:42 stderr.txt
[2026-01-09 20:42:05] HITS file was successfully produced:
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas 217621178 Jan  9 20:38 shared/HITS.pool.root.1
[2026-01-09 20:42:05]  *** Contents of shared directory: ***
[2026-01-09 20:42:05] total 436248
[2026-01-09 20:42:05] -rw-r--r--. 2 boincer umatlas 226805407 Jan  9 17:57 ATLAS.root_0
[2026-01-09 20:42:05] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 17:57 start_atlas.sh
[2026-01-09 20:42:05] -rw-r--r--. 2 boincer umatlas    610539 Jan  9 17:57 input.tar.gz
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas 217621178 Jan  9 20:38 HITS.pool.root.1
[2026-01-09 20:42:05] -rw-------. 1 boincer umatlas   1648640 Jan  9 20:42 result.tar.gz
20:42:07 (2857994): run_atlas exited; CPU time 31110.896130
20:42:07 (2857994): called boinc_finish(0)

</stderr_txt>
]]>

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