Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:15:37 (10040): wrapper (7.7.26015): starting
03:15:37 (10040): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 03:15:37] Arguments: --nthreads 8
[2026-01-10 03:15:37] Threads: 8
[2026-01-10 03:15:37] Checking for CVMFS
[2026-01-10 03:15:38] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 03:15:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 03:15:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 03:15:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 03:15:40] 2.11.2.0 8264 36225 130316 154964 2 15 19753720 25165824 899 130560 0 16414257 99.824 10120330 4284 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-10 03:15:40] CVMFS is ok
[2026-01-10 03:15:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 03:15:40] Checking for apptainer binary...
[2026-01-10 03:15:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 03:15:41] Running /usr/bin/apptainer --version
[2026-01-10 03:15:41] apptainer version 1.3.2-1.el7
[2026-01-10 03:15:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 03:16:02] cg-vwn379.simple-grid.lan
[2026-01-10 03:16:02] apptainer works
[2026-01-10 03:16:02] Set ATHENA_PROC_NUMBER=8
[2026-01-10 03:16:02] Set ATHENA_CORE_NUMBER=8
[2026-01-10 03:16:02] Starting ATLAS job with PandaID=6963167275
[2026-01-10 03:16:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 09:22:32]  *** The last 200 lines of the pilot log: ***
[2026-01-10 09:22:32] 2026-01-10 08:21:29,463 | INFO     | time since job start (21645s) is within the limit (349056.0s)
[2026-01-10 09:22:32] 2026-01-10 08:21:29,950 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 09:22:32] 2026-01-10 08:21:29,952 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 1999.999
[2026-01-10 09:22:32] 2026-01-10 08:21:29,953 | INFO     | using path: /var/lib/boinc/slots/3/PanDA_Pilot-6963167275/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 09:22:32] 2026-01-10 08:21:29,954 | INFO     | extracted standard info from prmon json
[2026-01-10 09:22:32] 2026-01-10 08:21:29,954 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 09:22:32] 2026-01-10 08:21:29,954 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 09:22:32] 2026-01-10 08:21:29,955 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 09:22:32] 2026-01-10 08:21:29,955 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 09:22:32] 2026-01-10 08:21:29,968 | INFO     | fitting pss+swap vs Time
[2026-01-10 09:22:32] 2026-01-10 08:21:29,969 | INFO     | sum of square deviations: 12733038740.0
[2026-01-10 09:22:32] 2026-01-10 08:21:29,973 | INFO     | sum of deviations: 132547038165.00006
[2026-01-10 09:22:32] 2026-01-10 08:21:29,973 | INFO     | mean x: 1768022663.0
[2026-01-10 09:22:32] 2026-01-10 08:21:29,973 | INFO     | mean y: 2449952.5304347826
[2026-01-10 09:22:32] 2026-01-10 08:21:29,973 | INFO     | intersect: -18402125119.80191
[2026-01-10 09:22:32] 2026-01-10 08:21:29,974 | INFO     | chi2: 9.460997382493254
[2026-01-10 09:22:32] 2026-01-10 08:21:29,975 | INFO     | sum of square deviations: 12187409905.0
[2026-01-10 09:22:32] 2026-01-10 08:21:29,978 | INFO     | sum of deviations: 176915018718.49994
[2026-01-10 09:22:32] 2026-01-10 08:21:29,979 | INFO     | mean x: 1768022510.5
[2026-01-10 09:22:32] 2026-01-10 08:21:29,979 | INFO     | mean y: 2462239.379411765
[2026-01-10 09:22:32] 2026-01-10 08:21:29,979 | INFO     | intersect: -25662526300.270164
[2026-01-10 09:22:32] 2026-01-10 08:21:29,979 | INFO     | chi2: 7.968595535995589
[2026-01-10 09:22:32] 2026-01-10 08:21:29,980 | INFO     | current chi2=7.968595535995589 (change=15.77425493488904 %)
[2026-01-10 09:22:32] 2026-01-10 08:21:29,980 | INFO     | right removable region: 339
[2026-01-10 09:22:32] 2026-01-10 08:21:29,980 | INFO     | sum of square deviations: 12187409905.0
[2026-01-10 09:22:32] 2026-01-10 08:21:29,991 | INFO     | sum of deviations: 10154229336.000076
[2026-01-10 09:22:32] 2026-01-10 08:21:29,992 | INFO     | mean x: 1768022815.5
[2026-01-10 09:22:32] 2026-01-10 08:21:29,992 | INFO     | mean y: 2484147.4588235295
[2026-01-10 09:22:32] 2026-01-10 08:21:29,992 | INFO     | intersect: -1470585953.5560117
[2026-01-10 09:22:32] 2026-01-10 08:21:29,992 | INFO     | chi2: 4.481756922128646
[2026-01-10 09:22:32] 2026-01-10 08:21:29,993 | INFO     | current chi2=4.481756922128646 (change=52.629128400122546 %)
[2026-01-10 09:22:32] 2026-01-10 08:21:29,993 | INFO     | sum of square deviations: 11657595320.0
[2026-01-10 09:22:32] 2026-01-10 08:21:29,997 | INFO     | sum of deviations: -79027014996.0
[2026-01-10 09:22:32] 2026-01-10 08:21:29,997 | INFO     | mean x: 1768022968.0
[2026-01-10 09:22:32] 2026-01-10 08:21:29,997 | INFO     | mean y: 2509779.295522388
[2026-01-10 09:22:32] 2026-01-10 08:21:29,997 | INFO     | intersect: 11987964220.804514
[2026-01-10 09:22:32] 2026-01-10 08:21:29,998 | INFO     | chi2: 1.9085130402860222
[2026-01-10 09:22:32] 2026-01-10 08:21:29,998 | INFO     | current chi2=1.9085130402860222 (change=57.41596268055612 %)
[2026-01-10 09:22:32] 2026-01-10 08:21:29,999 | INFO     | sum of square deviations: 11143362422.5
[2026-01-10 09:22:32] 2026-01-10 08:21:30,002 | INFO     | sum of deviations: -90802563087.99998
[2026-01-10 09:22:32] 2026-01-10 08:21:30,003 | INFO     | mean x: 1768023120.5
[2026-01-10 09:22:32] 2026-01-10 08:21:30,003 | INFO     | mean y: 2513251.345454545
[2026-01-10 09:22:32] 2026-01-10 08:21:30,003 | INFO     | intersect: 14409388380.533497
[2026-01-10 09:22:32] 2026-01-10 08:21:30,003 | INFO     | chi2: 1.8239851100862445
[2026-01-10 09:22:32] 2026-01-10 08:21:30,004 | INFO     | current chi2=1.8239851100862445 (change=4.428994112982836 %)
[2026-01-10 09:22:32] 2026-01-10 08:21:30,004 | INFO     | left removable region: 30
[2026-01-10 09:22:32] 2026-01-10 08:21:30,004 | INFO     | sum of square deviations: 9148487810.0
[2026-01-10 09:22:32] 2026-01-10 08:21:30,007 | INFO     | sum of deviations: -14098117358.000002
[2026-01-10 09:22:32] 2026-01-10 08:21:30,008 | INFO     | mean x: 1768023395.0
[2026-01-10 09:22:32] 2026-01-10 08:21:30,008 | INFO     | mean y: 2516938.996763754
[2026-01-10 09:22:32] 2026-01-10 08:21:30,008 | INFO     | intersect: 2727098512.702724
[2026-01-10 09:22:32] 2026-01-10 08:21:30,008 | INFO     | chi2: 0.11671868164445373
[2026-01-10 09:22:32] 2026-01-10 08:21:30,009 | INFO     | current memory leak: -1.54 B/s (using 309 data points, chi2=0.12)
[2026-01-10 09:22:32] 2026-01-10 08:21:30,009 | INFO     | could have reported an average CPU frequency of 1999 MHz (14 samples)
[2026-01-10 09:22:32] 2026-01-10 08:21:30,009 | INFO     | ..............................
[2026-01-10 09:22:32] 2026-01-10 08:21:30,010 | INFO     | . Timing measurements:
[2026-01-10 09:22:32] 2026-01-10 08:21:30,010 | INFO     | . get job = 0 s
[2026-01-10 09:22:32] 2026-01-10 08:21:30,010 | INFO     | . initial setup = 10 s
[2026-01-10 09:22:32] 2026-01-10 08:21:30,010 | INFO     | . payload setup = 150 s
[2026-01-10 09:22:32] 2026-01-10 08:21:30,010 | INFO     | . stage-in = 0 s
[2026-01-10 09:22:32] 2026-01-10 08:21:30,010 | INFO     | . payload execution = 21170 s
[2026-01-10 09:22:32] 2026-01-10 08:21:30,010 | INFO     | . stage-out = 4 s
[2026-01-10 09:22:32] 2026-01-10 08:21:30,010 | INFO     | . log creation = 1 s
[2026-01-10 09:22:32] 2026-01-10 08:21:30,010 | INFO     | ..............................
[2026-01-10 09:22:32] 2026-01-10 08:21:30,254 | INFO     | 
[2026-01-10 09:22:32] 2026-01-10 08:21:30,255 | INFO     | job summary report
[2026-01-10 09:22:32] 2026-01-10 08:21:30,255 | INFO     | --------------------------------------------------
[2026-01-10 09:22:32] 2026-01-10 08:21:30,255 | INFO     | PanDA job id: 6963167275
[2026-01-10 09:22:32] 2026-01-10 08:21:30,255 | INFO     | task id: 47898826
[2026-01-10 09:22:32] 2026-01-10 08:21:30,255 | INFO     | errors: (none)
[2026-01-10 09:22:32] 2026-01-10 08:21:30,255 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 09:22:32] 2026-01-10 08:21:30,255 | INFO     | pilot state: finished 
[2026-01-10 09:22:32] 2026-01-10 08:21:30,255 | INFO     | transexitcode: 0
[2026-01-10 09:22:32] 2026-01-10 08:21:30,256 | INFO     | exeerrorcode: 0
[2026-01-10 09:22:32] 2026-01-10 08:21:30,256 | INFO     | exeerrordiag: 
[2026-01-10 09:22:32] 2026-01-10 08:21:30,256 | INFO     | exitcode: 0
[2026-01-10 09:22:32] 2026-01-10 08:21:30,256 | INFO     | exitmsg: OK
[2026-01-10 09:22:32] 2026-01-10 08:21:30,256 | INFO     | cpuconsumptiontime: 79754 s
[2026-01-10 09:22:32] 2026-01-10 08:21:30,256 | INFO     | nevents: 400
[2026-01-10 09:22:32] 2026-01-10 08:21:30,256 | INFO     | neventsw: 0
[2026-01-10 09:22:32] 2026-01-10 08:21:30,256 | INFO     | pid: 20280
[2026-01-10 09:22:32] 2026-01-10 08:21:30,256 | INFO     | pgrp: 20280
[2026-01-10 09:22:32] 2026-01-10 08:21:30,257 | INFO     | corecount: 8
[2026-01-10 09:22:32] 2026-01-10 08:21:30,257 | INFO     | event service: False
[2026-01-10 09:22:32] 2026-01-10 08:21:30,257 | INFO     | sizes: {0: 2283140, 1: 2283996, 2: 2283996, 13: 2284024, 23: 2284080, 34: 2284108, 45: 2284264, 56: 2284292, 66: 2284320, 77: 2284348, 88: 2284404, 97: 2284974, 98
[2026-01-10 09:22:32] 2026-01-10 08:21:30,257 | INFO     | --------------------------------------------------
[2026-01-10 09:22:32] 2026-01-10 08:21:30,257 | INFO     | 
[2026-01-10 09:22:32] 2026-01-10 08:21:30,257 | INFO     | executing command: ls -lF /var/lib/boinc/slots/3
[2026-01-10 09:22:32] 2026-01-10 08:21:30,834 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,834 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,835 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,835 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,835 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,835 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,835 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,835 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,835 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,835 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,835 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,836 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,836 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,836 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,836 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,836 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,836 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,836 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 09:22:32] 2026-01-10 08:21:30,836 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,837 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 09:22:32] 2026-01-10 08:21:30,837 | INFO     | job 6963167275 has completed (purged errors)
[2026-01-10 09:22:32] 2026-01-10 08:21:30,837 | INFO     | overall cleanup function is called
[2026-01-10 09:22:32] 2026-01-10 08:21:31,845 | INFO     | --- collectZombieJob: --- 10, [20280]
[2026-01-10 09:22:32] 2026-01-10 08:21:31,845 | INFO     | zombie collector waiting for pid 20280
[2026-01-10 09:22:32] 2026-01-10 08:21:31,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 09:22:32] 2026-01-10 08:21:31,846 | INFO     | collected zombie processes
[2026-01-10 09:22:32] 2026-01-10 08:21:31,846 | INFO     | will attempt to kill all subprocesses of pid=20280
[2026-01-10 09:22:32] 2026-01-10 08:21:31,958 | INFO     | process IDs to be killed: [20280] (in reverse order)
[2026-01-10 09:22:32] 2026-01-10 08:21:33,013 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 09:22:32] 2026-01-10 08:21:33,013 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 09:22:32] 2026-01-10 08:21:33,016 | INFO     | did not find any defunct processes belonging to 20280
[2026-01-10 09:22:32] 2026-01-10 08:21:33,017 | INFO     | did not find any defunct processes belonging to 20280
[2026-01-10 09:22:32] 2026-01-10 08:21:33,018 | INFO     | ready for new job
[2026-01-10 09:22:32] 2026-01-10 08:21:33,018 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 09:22:32] 2026-01-10 08:21:33,020 | INFO     | ***************************************
[2026-01-10 09:22:32] 2026-01-10 08:21:33,021 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 09:22:32] 2026-01-10 08:21:33,021 | INFO     | ***************************************
[2026-01-10 09:22:32] 2026-01-10 08:21:33,021 | INFO     | 
[2026-01-10 09:22:32] 2026-01-10 08:21:33,021 | INFO     | pilot is running in a VM
[2026-01-10 09:22:32] 2026-01-10 08:21:33,022 | INFO     | architecture information:
[2026-01-10 09:22:32] 2026-01-10 08:21:33,024 | INFO     | executing command: cat /etc/os-release
[2026-01-10 09:22:32] 2026-01-10 08:21:33,241 | INFO     | cat /etc/os-release:
[2026-01-10 09:22:32] NAME="CentOS Linux"
[2026-01-10 09:22:32] VERSION="7 (Core)"
[2026-01-10 09:22:32] ID="centos"
[2026-01-10 09:22:32] ID_LIKE="rhel fedora"
[2026-01-10 09:22:32] VERSION_ID="7"
[2026-01-10 09:22:32] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 09:22:32] ANSI_COLOR="0;31"
[2026-01-10 09:22:32] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 09:22:32] HOME_URL="https://www.centos.org/"
[2026-01-10 09:22:32] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 09:22:32] 
[2026-01-10 09:22:32] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 09:22:32] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 09:22:32] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 09:22:32] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 09:22:32] 
[2026-01-10 09:22:32] 2026-01-10 08:21:33,241 | INFO     | ***************************************
[2026-01-10 09:22:32] 2026-01-10 08:21:33,744 | INFO     | executing command: df -mP /var/lib/boinc/slots/3
[2026-01-10 09:22:32] 2026-01-10 08:21:34,001 | INFO     | sufficient remaining disk space (497211670528 B)
[2026-01-10 09:22:32] 2026-01-10 08:21:34,001 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 09:22:32] 2026-01-10 08:21:34,001 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 09:22:32] 2026-01-10 08:21:34,001 | INFO     | update_server=False
[2026-01-10 09:22:32] 2026-01-10 08:21:34,002 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 09:22:32] 2026-01-10 08:21:34,069 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:22:32] 2026-01-10 08:21:34,070 | INFO     | aborting loop
[2026-01-10 09:22:32] 2026-01-10 08:21:34,138 | INFO     | all job control threads have been joined
[2026-01-10 09:22:32] 2026-01-10 08:21:34,772 | INFO     | all payload control threads have been joined
[2026-01-10 09:22:32] 2026-01-10 08:21:34,852 | INFO     | all data control threads have been joined
[2026-01-10 09:22:32] 2026-01-10 08:21:34,949 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 09:22:32] 2026-01-10 08:21:35,008 | INFO     | [job] retrieve thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:35,075 | INFO     | [job] job monitor thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:35,144 | INFO     | [job] control thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:35,200 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 09:22:32] 2026-01-10 08:21:35,351 | INFO     | [payload] failed_post thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:35,628 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:35,693 | INFO     | [job] validate thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:35,778 | INFO     | [payload] control thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:35,848 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:35,858 | INFO     | [data] control thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:36,054 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 09:22:32] 2026-01-10 08:21:36,160 | INFO     | [payload] validate_post thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:36,206 | INFO     | [job] queue monitor thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:36,287 | INFO     | [data] copytool_in thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:36,298 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:36,440 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:36,956 | INFO     | [data] copytool_out thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:21:40,063 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 09:22:32] 2026-01-10 08:22:02,649 | INFO     | PID=13789 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 09:22:32] 2026-01-10 08:22:02,649 | INFO     | .. there are 2 such processes running
[2026-01-10 09:22:32] 2026-01-10 08:22:02,649 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 09:22:32] 2026-01-10 08:22:02,649 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 09:22:32] 2026-01-10 08:22:02,649 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 09:22:32] 2026-01-10 08:22:20,806 | INFO     | [monitor] cgroup control has ended
[2026-01-10 09:22:32] 2026-01-10 08:22:21,985 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139634637690688)>', '<ExcThread(monitor, started 139633748866816)>']
[2026-01-10 09:22:32] 2026-01-10 08:22:22,768 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 09:22:32] 2026-01-10 08:22:22,768 | INFO     | [monitor] control thread has ended
[2026-01-10 09:22:32] 2026-01-10 08:22:27,011 | INFO     | all workflow threads have been joined
[2026-01-10 09:22:32] 2026-01-10 08:22:27,012 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 09:22:32] 2026-01-10 08:22:27,012 | INFO     | traces error code: 0
[2026-01-10 09:22:32] 2026-01-10 08:22:27,012 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 09:22:32] 2026-01-10 08:22:27,467 [wrapper] ==== pilot stdout END ====
[2026-01-10 09:22:32] 2026-01-10 08:22:27,531 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 09:22:32] 2026-01-10 08:22:27,620 [wrapper] pilotpid: 13789
[2026-01-10 09:22:32] 2026-01-10 08:22:27,735 [wrapper] Pilot exit status: 0
[2026-01-10 09:22:32] 2026-01-10 08:22:28,342 [wrapper] pandaids: 6963167275
[2026-01-10 09:22:32] 2026-01-10 08:22:29,486 [wrapper] cleanup supervisor_pilot 20941 13790
[2026-01-10 09:22:32] 2026-01-10 08:22:29,546 [wrapper] Test setup, not cleaning
[2026-01-10 09:22:32] 2026-01-10 08:22:29,649 [wrapper] apfmon messages muted
[2026-01-10 09:22:32] 2026-01-10 08:22:29,758 [wrapper] ==== wrapper stdout END ====
[2026-01-10 09:22:32] 2026-01-10 08:22:29,854 [wrapper] ==== wrapper stderr END ====
[2026-01-10 09:22:32]  *** Error codes and diagnostics ***
[2026-01-10 09:22:32]     "exeErrorCode": 0,
[2026-01-10 09:22:32]     "exeErrorDiag": "",
[2026-01-10 09:22:32]     "pilotErrorCode": 0,
[2026-01-10 09:22:32]     "pilotErrorDiag": "",
[2026-01-10 09:22:32]  *** Listing of results directory ***
[2026-01-10 09:22:32] total 443240
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc    579449 Jan  9 01:57 pilot3.tar.gz
[2026-01-10 09:22:32] -rwx------. 1 boinc boinc     36322 Jan  9 01:57 runpilot2-wrapper.sh
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc      5112 Jan  9 01:57 queuedata.json
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc       100 Jan 10 03:15 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 09:22:32] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 03:15 run_atlas
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc       105 Jan 10 03:15 job.xml
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc      6391 Jan 10 03:15 init_data.xml
[2026-01-10 09:22:32] -rw-r--r--. 2 boinc boinc 223328115 Jan 10 03:15 EVNT.47898824._001382.pool.root.1
[2026-01-10 09:22:32] -rw-r--r--. 2 boinc boinc     15847 Jan 10 03:15 start_atlas.sh
[2026-01-10 09:22:32] drwxrwx--x. 2 boinc boinc        68 Jan 10 03:15 shared
[2026-01-10 09:22:32] -rw-r--r--. 2 boinc boinc    592394 Jan 10 03:15 input.tar.gz
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc         0 Jan 10 03:15 boinc_lockfile
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc      2518 Jan 10 03:16 pandaJob.out
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc    989382 Jan 10 03:20 agis_schedconf.cvmfs.json
[2026-01-10 09:22:32] drwx------. 5 boinc boinc      4096 Jan 10 03:20 pilot3
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc 219824523 Jan 10 09:17 HITS.47898826._035650.pool.root.1
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc       531 Jan 10 09:18 boinc_task_state.xml
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc      1011 Jan 10 09:19 memory_monitor_summary.json
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc   1516240 Jan 10 09:19 agis_ddmendpoints.agis.ALL.json
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc    536028 Jan 10 09:19 log.47898826._035650.job.log.tgz.1
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc        95 Jan 10 09:21 pilot_heartbeat.json
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc      7777 Jan 10 09:21 heartbeat.json
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc      4884 Jan 10 09:22 pilotlog.txt
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc      8192 Jan 10 09:22 boinc_mmap_file
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc        28 Jan 10 09:22 wrapper_checkpoint.txt
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc   2875665 Jan 10 09:22 log.47898826._035650.job.log.1
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc       357 Jan 10 09:22 output.list
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc       620 Jan 10 09:22 runtime_log
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc   3430400 Jan 10 09:22 result.tar.gz
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc      8817 Jan 10 09:22 runtime_log.err
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc       657 Jan 10 09:22 i5GNDmnzFy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUplKDmBv9RMn.diag
[2026-01-10 09:22:32] -rw-r--r--. 1 boinc boinc     20784 Jan 10 09:22 stderr.txt
[2026-01-10 09:22:32] HITS file was successfully produced:
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc 219824523 Jan 10 09:17 shared/HITS.pool.root.1
[2026-01-10 09:22:32]  *** Contents of shared directory: ***
[2026-01-10 09:22:32] total 436720
[2026-01-10 09:22:32] -rw-r--r--. 2 boinc boinc 223328115 Jan 10 03:15 ATLAS.root_0
[2026-01-10 09:22:32] -rw-r--r--. 2 boinc boinc     15847 Jan 10 03:15 start_atlas.sh
[2026-01-10 09:22:32] -rw-r--r--. 2 boinc boinc    592394 Jan 10 03:15 input.tar.gz
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc 219824523 Jan 10 09:17 HITS.pool.root.1
[2026-01-10 09:22:32] -rw-------. 1 boinc boinc   3430400 Jan 10 09:22 result.tar.gz
09:22:34 (10040): run_atlas exited; CPU time 79965.155755
09:22:34 (10040): called boinc_finish(0)

</stderr_txt>
]]>

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