Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:28:43 (3730661): wrapper (7.7.26015): starting
16:28:43 (3730661): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:28:43] Arguments: --nthreads 8
[2026-01-09 16:28:43] Threads: 8
[2026-01-09 16:28:43] Checking for CVMFS
[2026-01-09 16:28:43] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:28:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:28:43] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:28:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:28:44] 2.13.3.0 3884235 17479 165788 154957 1 108 39842772 40960001 13280 16776704 0 19617399 99.547 23857971 43956 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 16:28:44] CVMFS is ok
[2026-01-09 16:28:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:28:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:28:44] Further information can be found at the LHC@home message board.
[2026-01-09 16:28:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:28:44] Checking for apptainer binary...
[2026-01-09 16:28:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:28:44] Running /usr/bin/apptainer --version
[2026-01-09 16:28:44] apptainer version 1.4.5-2.el9
[2026-01-09 16:28:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:28:44] c-206-35.aglt2.org
[2026-01-09 16:28:44] apptainer works
[2026-01-09 16:28:44] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:28:44] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:28:44] Starting ATLAS job with PandaID=6963157603
[2026-01-09 16:28:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:39:00]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:39:00] 2026-01-10 00:38:22,599 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:39:00] 2026-01-10 00:38:22,989 | INFO     | time since job start (11349s) is within the limit (349056.0s)
[2026-01-09 19:39:00] 2026-01-10 00:38:24,995 | INFO     | time since job start (11351s) is within the limit (349056.0s)
[2026-01-09 19:39:00] 2026-01-10 00:38:25,102 | INFO     | monitor loop #789: job 0:6963157603 is in state 'finished'
[2026-01-09 19:39:00] 2026-01-10 00:38:25,102 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:39:00] 2026-01-10 00:38:27,001 | INFO     | time since job start (11354s) is within the limit (349056.0s)
[2026-01-09 19:39:00] 2026-01-10 00:38:27,607 | INFO     | monitor loop #790: job 0:6963157603 is in state 'finished'
[2026-01-09 19:39:00] 2026-01-10 00:38:27,607 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:39:00] 2026-01-10 00:38:28,783 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-09 19:39:00] 2026-01-10 00:38:28,787 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3276.2892343749995
[2026-01-09 19:39:00] 2026-01-10 00:38:28,797 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963157603/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:39:00] 2026-01-10 00:38:28,797 | INFO     | extracted standard info from prmon json
[2026-01-09 19:39:00] 2026-01-10 00:38:28,797 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 19:39:00] 2026-01-10 00:38:28,797 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 19:39:00] 2026-01-10 00:38:28,798 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 19:39:00] 2026-01-10 00:38:28,798 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 19:39:00] 2026-01-10 00:38:28,801 | INFO     | fitting pss+swap vs Time
[2026-01-09 19:39:00] 2026-01-10 00:38:28,801 | INFO     | sum of square deviations: 1963158137.4378397
[2026-01-09 19:39:00] 2026-01-10 00:38:28,802 | INFO     | sum of deviations: -34636715722.58918
[2026-01-09 19:39:00] 2026-01-10 00:38:28,802 | INFO     | mean x: 1767999832.091892
[2026-01-09 19:39:00] 2026-01-10 00:38:28,802 | INFO     | mean y: 2608481.7405405403
[2026-01-09 19:39:00] 2026-01-10 00:38:28,802 | INFO     | intersect: 31196074975.313454
[2026-01-09 19:39:00] 2026-01-10 00:38:28,802 | INFO     | chi2: 1.6334730768438426
[2026-01-09 19:39:00] 2026-01-10 00:38:28,803 | INFO     | sum of square deviations: 1808239487.3944368
[2026-01-09 19:39:00] 2026-01-10 00:38:28,804 | INFO     | sum of deviations: -33482654171.1611
[2026-01-09 19:39:00] 2026-01-10 00:38:28,804 | INFO     | mean x: 1767999679.5944445
[2026-01-09 19:39:00] 2026-01-10 00:38:28,804 | INFO     | mean y: 2609618.038888889
[2026-01-09 19:39:00] 2026-01-10 00:38:28,804 | INFO     | intersect: 32740154760.29444
[2026-01-09 19:39:00] 2026-01-10 00:38:28,804 | INFO     | chi2: 1.6275989393122858
[2026-01-09 19:39:00] 2026-01-10 00:38:28,804 | INFO     | current chi2=1.6275989393122858 (change=0.3596103060912771 %)
[2026-01-09 19:39:00] 2026-01-10 00:38:28,804 | INFO     | right removable region: 179
[2026-01-09 19:39:00] 2026-01-10 00:38:28,804 | INFO     | sum of square deviations: 1808229117.3944368
[2026-01-09 19:39:00] 2026-01-10 00:38:28,805 | INFO     | sum of deviations: -57850633959.74448
[2026-01-09 19:39:00] 2026-01-10 00:38:28,806 | INFO     | mean x: 1767999984.5944445
[2026-01-09 19:39:00] 2026-01-10 00:38:28,806 | INFO     | mean y: 2630964.4555555554
[2026-01-09 19:39:00] 2026-01-10 00:38:28,806 | INFO     | intersect: 56566215172.737236
[2026-01-09 19:39:00] 2026-01-10 00:38:28,806 | INFO     | chi2: 0.3455352124059571
[2026-01-09 19:39:00] 2026-01-10 00:38:28,806 | INFO     | current chi2=0.3455352124059571 (change=78.84659274130237 %)
[2026-01-09 19:39:00] 2026-01-10 00:38:28,806 | INFO     | sum of square deviations: 1661705526.8800015
[2026-01-09 19:39:00] 2026-01-10 00:38:28,807 | INFO     | sum of deviations: -51200527742.83994
[2026-01-09 19:39:00] 2026-01-10 00:38:28,807 | INFO     | mean x: 1768000137.08
[2026-01-09 19:39:00] 2026-01-10 00:38:28,807 | INFO     | mean y: 2624036.1314285714
[2026-01-09 19:39:00] 2026-01-10 00:38:28,807 | INFO     | intersect: 54478304957.69243
[2026-01-09 19:39:00] 2026-01-10 00:38:28,808 | INFO     | chi2: 0.34175527705695474
[2026-01-09 19:39:00] 2026-01-10 00:38:28,808 | INFO     | current chi2=0.34175527705695474 (change=1.0939363669140114 %)
[2026-01-09 19:39:00] 2026-01-10 00:38:28,808 | INFO     | left removable region: 20
[2026-01-09 19:39:00] 2026-01-10 00:38:28,808 | INFO     | sum of square deviations: 1246320900.2389994
[2026-01-09 19:39:00] 2026-01-10 00:38:28,809 | INFO     | sum of deviations: -34891700360.723236
[2026-01-09 19:39:00] 2026-01-10 00:38:28,809 | INFO     | mean x: 1768000259.0691824
[2026-01-09 19:39:00] 2026-01-10 00:38:28,811 | INFO     | mean y: 2608328.974842767
[2026-01-09 19:39:00] 2026-01-10 00:38:28,811 | INFO     | intersect: 49499118630.048454
[2026-01-09 19:39:00] 2026-01-10 00:38:28,811 | INFO     | chi2: 0.30784997179904733
[2026-01-09 19:39:00] 2026-01-10 00:38:28,811 | INFO     | current memory leak: -28.00 B/s (using 159 data points, chi2=0.31)
[2026-01-09 19:39:00] 2026-01-10 00:38:28,812 | INFO     | could have reported an average CPU frequency of 3260 MHz (10 samples)
[2026-01-09 19:39:00] 2026-01-10 00:38:28,812 | INFO     | ..............................
[2026-01-09 19:39:00] 2026-01-10 00:38:28,812 | INFO     | . Timing measurements:
[2026-01-09 19:39:00] 2026-01-10 00:38:28,812 | INFO     | . get job = 0 s
[2026-01-09 19:39:00] 2026-01-10 00:38:28,812 | INFO     | . initial setup = 2 s
[2026-01-09 19:39:00] 2026-01-10 00:38:28,812 | INFO     | . payload setup = 18 s
[2026-01-09 19:39:00] 2026-01-10 00:38:28,812 | INFO     | . stage-in = 0 s
[2026-01-09 19:39:00] 2026-01-10 00:38:28,812 | INFO     | . payload execution = 11281 s
[2026-01-09 19:39:00] 2026-01-10 00:38:28,812 | INFO     | . stage-out = 2 s
[2026-01-09 19:39:00] 2026-01-10 00:38:28,813 | INFO     | . log creation = 0 s
[2026-01-09 19:39:00] 2026-01-10 00:38:28,813 | INFO     | ..............................
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | 
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | job summary report
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | --------------------------------------------------
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | PanDA job id: 6963157603
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | task id: 47898826
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | errors: (none)
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | pilot state: finished 
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | transexitcode: 0
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | exeerrorcode: 0
[2026-01-09 19:39:00] 2026-01-10 00:38:28,887 | INFO     | exeerrordiag: 
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | exitcode: 0
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | exitmsg: OK
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | cpuconsumptiontime: 47506 s
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | nevents: 400
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | neventsw: 0
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | pid: 3742543
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | pgrp: 3742543
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | corecount: 8
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | event service: False
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | sizes: {0: 2283857, 1: 2283999, 12: 2283999, 14: 2284289, 22: 2284317, 11304: 2313923, 11307: 2322921, 11309: 2322977, 11318: 2323171}
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | --------------------------------------------------
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | 
[2026-01-09 19:39:00] 2026-01-10 00:38:28,888 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 19:39:00] 2026-01-10 00:38:28,908 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,908 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,908 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,908 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,908 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,908 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,908 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,908 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,909 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:39:00] 2026-01-10 00:38:28,910 | INFO     | job 6963157603 has completed (purged errors)
[2026-01-09 19:39:00] 2026-01-10 00:38:28,910 | INFO     | overall cleanup function is called
[2026-01-09 19:39:00] 2026-01-10 00:38:29,919 | INFO     | --- collectZombieJob: --- 10, [3742543]
[2026-01-09 19:39:00] 2026-01-10 00:38:29,919 | INFO     | zombie collector waiting for pid 3742543
[2026-01-09 19:39:00] 2026-01-10 00:38:29,919 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:39:00] 2026-01-10 00:38:29,919 | INFO     | collected zombie processes
[2026-01-09 19:39:00] 2026-01-10 00:38:29,919 | INFO     | will attempt to kill all subprocesses of pid=3742543
[2026-01-09 19:39:00] 2026-01-10 00:38:30,166 | INFO     | process IDs to be killed: [3742543] (in reverse order)
[2026-01-09 19:39:00] 2026-01-10 00:38:30,256 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:39:00] 2026-01-10 00:38:30,256 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:39:00] 2026-01-10 00:38:30,267 | INFO     | did not find any defunct processes belonging to 3742543
[2026-01-09 19:39:00] 2026-01-10 00:38:30,277 | INFO     | did not find any defunct processes belonging to 3742543
[2026-01-09 19:39:00] 2026-01-10 00:38:30,277 | INFO     | ready for new job
[2026-01-09 19:39:00] 2026-01-10 00:38:30,277 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:39:00] 2026-01-10 00:38:30,279 | INFO     | ***************************************
[2026-01-09 19:39:00] 2026-01-10 00:38:30,279 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:39:00] 2026-01-10 00:38:30,280 | INFO     | ***************************************
[2026-01-09 19:39:00] 2026-01-10 00:38:30,280 | INFO     | 
[2026-01-09 19:39:00] 2026-01-10 00:38:30,283 | INFO     | architecture information:
[2026-01-09 19:39:00] 2026-01-10 00:38:30,283 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:39:00] 2026-01-10 00:38:30,326 | INFO     | cat /etc/os-release:
[2026-01-09 19:39:00] NAME="CentOS Linux"
[2026-01-09 19:39:00] VERSION="7 (Core)"
[2026-01-09 19:39:00] ID="centos"
[2026-01-09 19:39:00] ID_LIKE="rhel fedora"
[2026-01-09 19:39:00] VERSION_ID="7"
[2026-01-09 19:39:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:39:00] ANSI_COLOR="0;31"
[2026-01-09 19:39:00] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:39:00] HOME_URL="https://www.centos.org/"
[2026-01-09 19:39:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:39:00] 
[2026-01-09 19:39:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:39:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:39:00] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:39:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:39:00] 
[2026-01-09 19:39:00] 2026-01-10 00:38:30,327 | INFO     | ***************************************
[2026-01-09 19:39:00] 2026-01-10 00:38:30,831 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 19:39:00] 2026-01-10 00:38:30,849 | INFO     | sufficient remaining disk space (84293976064 B)
[2026-01-09 19:39:00] 2026-01-10 00:38:30,849 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:39:00] 2026-01-10 00:38:30,849 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:39:00] 2026-01-10 00:38:30,849 | INFO     | update_server=False
[2026-01-09 19:39:00] 2026-01-10 00:38:30,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:39:00] 2026-01-10 00:38:30,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:39:00] 2026-01-10 00:38:30,850 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:39:00] 2026-01-10 00:38:30,957 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:39:00] 2026-01-10 00:38:31,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:39:00] 2026-01-10 00:38:31,120 | INFO     | aborting loop
[2026-01-09 19:39:00] 2026-01-10 00:38:31,509 | INFO     | all payload control threads have been joined
[2026-01-09 19:39:00] 2026-01-10 00:38:31,532 | INFO     | all data control threads have been joined
[2026-01-09 19:39:00] 2026-01-10 00:38:31,855 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:31,859 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:32,126 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:32,189 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:39:00] 2026-01-10 00:38:32,196 | INFO     | all job control threads have been joined
[2026-01-09 19:39:00] 2026-01-10 00:38:32,244 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:32,469 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:32,517 | INFO     | [payload] control thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:32,537 | INFO     | [data] control thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:32,706 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:32,834 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:32,872 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:32,963 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:33,074 | INFO     | [job] validate thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:33,201 | INFO     | [job] control thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:33,204 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:34,858 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:41,375 | INFO     | job.realtimelogging is not enabled
[2026-01-09 19:39:00] 2026-01-10 00:38:42,384 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:39:00] 2026-01-10 00:38:44,207 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140447530972992)>', '<ExcThread(monitor, started 140447175407360)>']
[2026-01-09 19:39:00] 2026-01-10 00:38:49,233 | INFO     | all workflow threads have been joined
[2026-01-09 19:39:00] 2026-01-10 00:38:49,233 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:39:00] 2026-01-10 00:38:49,233 | INFO     | traces error code: 0
[2026-01-09 19:39:00] 2026-01-10 00:38:49,234 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:39:00] 2026-01-10 00:39:00,533 | INFO     | PID=3734504 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 19:39:00] 2026-01-10 00:39:00,533 | INFO     | .. there are 11 such processes running
[2026-01-09 19:39:00] 2026-01-10 00:39:00,533 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:39:00] 2026-01-10 00:39:00,534 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:39:00] 2026-01-10 00:39:00,534 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:39:00] 2026-01-10 00:39:00,534 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:39:00] 2026-01-10 00:39:00,534 | INFO     | [monitor] control thread has ended
[2026-01-09 19:39:00] 2026-01-10 00:39:00,642 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:39:00] 2026-01-10 00:39:00,644 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:39:00] 2026-01-10 00:39:00,647 [wrapper] pilotpid: 3734504
[2026-01-09 19:39:00] 2026-01-10 00:39:00,649 [wrapper] Pilot exit status: 0
[2026-01-09 19:39:00] 2026-01-10 00:39:00,666 [wrapper] pandaids: 6963157603
[2026-01-09 19:39:00] 2026-01-10 00:39:00,730 [wrapper] cleanup supervisor_pilot 4063444 3734505
[2026-01-09 19:39:00] 2026-01-10 00:39:00,732 [wrapper] Test setup, not cleaning
[2026-01-09 19:39:00] 2026-01-10 00:39:00,735 [wrapper] apfmon messages muted
[2026-01-09 19:39:00] 2026-01-10 00:39:00,737 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:39:00] 2026-01-10 00:39:00,739 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:39:00]  *** Error codes and diagnostics ***
[2026-01-09 19:39:00]     "exeErrorCode": 0,
[2026-01-09 19:39:00]     "exeErrorDiag": "",
[2026-01-09 19:39:00]     "pilotErrorCode": 0,
[2026-01-09 19:39:00]     "pilotErrorDiag": "",
[2026-01-09 19:39:00]  *** Listing of results directory ***
[2026-01-09 19:39:00] total 443068
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 16:44 pilot3.tar.gz
[2026-01-09 19:39:00] -rwx------. 1 boincer umatlas     36322 Jan  8 16:47 runpilot2-wrapper.sh
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 16:50 queuedata.json
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas       100 Jan  9 16:28 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:39:00] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 16:28 run_atlas
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas       105 Jan  9 16:28 job.xml
[2026-01-09 19:39:00] -rw-r--r--. 2 boincer umatlas 222692438 Jan  9 16:28 EVNT.47898824._001254.pool.root.1
[2026-01-09 19:39:00] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:28 start_atlas.sh
[2026-01-09 19:39:00] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 16:28 shared
[2026-01-09 19:39:00] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 16:28 input.tar.gz
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas         0 Jan  9 16:28 boinc_lockfile
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 16:28 pandaJob.out
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas        57 Jan  9 16:28 setup.sh.local
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas    989398 Jan  9 16:29 agis_schedconf.cvmfs.json
[2026-01-09 19:39:00] drwx------. 5 boincer umatlas      4096 Jan  9 16:29 pilot3
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas 223114974 Jan  9 19:37 HITS.47898826._032464.pool.root.1
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas       530 Jan  9 19:37 boinc_task_state.xml
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas      6907 Jan  9 19:38 init_data.xml
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas      1028 Jan  9 19:38 memory_monitor_summary.json
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas        95 Jan  9 19:38 pilot_heartbeat.json
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas   1516240 Jan  9 19:38 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas    424222 Jan  9 19:38 log.47898826._032464.job.log.tgz.1
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas      7790 Jan  9 19:38 heartbeat.json
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 19:38 boinc_mmap_file
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas        28 Jan  9 19:38 wrapper_checkpoint.txt
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas       823 Jan  9 19:39 pilotlog.txt
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas   1568214 Jan  9 19:39 log.47898826._032464.job.log.1
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas       357 Jan  9 19:39 output.list
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas       620 Jan  9 19:39 runtime_log
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas   2007040 Jan  9 19:39 result.tar.gz
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas      9343 Jan  9 19:39 runtime_log.err
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas       655 Jan  9 19:39 QlcLDmO2Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyYlKDmOmNv9n.diag
[2026-01-09 19:39:00] -rw-r--r--. 1 boincer umatlas     21409 Jan  9 19:39 stderr.txt
[2026-01-09 19:39:00] HITS file was successfully produced:
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas 223114974 Jan  9 19:37 shared/HITS.pool.root.1
[2026-01-09 19:39:00]  *** Contents of shared directory: ***
[2026-01-09 19:39:00] total 437928
[2026-01-09 19:39:00] -rw-r--r--. 2 boincer umatlas 222692438 Jan  9 16:28 ATLAS.root_0
[2026-01-09 19:39:00] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:28 start_atlas.sh
[2026-01-09 19:39:00] -rw-r--r--. 2 boincer umatlas    592398 Jan  9 16:28 input.tar.gz
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas 223114974 Jan  9 19:37 HITS.pool.root.1
[2026-01-09 19:39:00] -rw-------. 1 boincer umatlas   2007040 Jan  9 19:39 result.tar.gz
19:39:02 (3730661): run_atlas exited; CPU time 47613.935274
19:39:02 (3730661): called boinc_finish(0)

</stderr_txt>
]]>

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