Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:01:29 (22293): wrapper (7.7.26015): starting
00:01:29 (22293): wrapper: running run_atlas (--nthreads 8)
[2026-01-10 00:01:29] Arguments: --nthreads 8
[2026-01-10 00:01:29] Threads: 8
[2026-01-10 00:01:29] Checking for CVMFS
[2026-01-10 00:01:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 00:01:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 00:01:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 00:01:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 00:01:40] 2.11.0.0 8301 129650 96160 154959 0 31 3106290 4095967 301 130560 2 4488843 99.413 6499927 432 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-10 00:01:40] CVMFS is ok
[2026-01-10 00:01:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 00:01:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 00:01:40] Further information can be found at the LHC@home message board.
[2026-01-10 00:01:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 00:01:40] Checking for apptainer binary...
[2026-01-10 00:01:40] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-10 00:01:40] apptainer is not installed, using version from CVMFS
[2026-01-10 00:01:40] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 00:01:49] WARNING: Environment variable TMPDIR already has value [/tmp/job_11009642/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node228
[2026-01-10 00:01:49] apptainer works
[2026-01-10 00:01:49] Set ATHENA_PROC_NUMBER=8
[2026-01-10 00:01:49] Set ATHENA_CORE_NUMBER=8
[2026-01-10 00:01:49] Starting ATLAS job with PandaID=6963156666
[2026-01-10 00:01:49] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11009642/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 01:14:25]  *** The last 200 lines of the pilot log: ***
[2026-01-10 01:14:25]  replicas=None
[2026-01-10 01:14:25]  scope=mc23_13p6TeV
[2026-01-10 01:14:25]  status=None
[2026-01-10 01:14:25]  status_code=0
[2026-01-10 01:14:25]  storage_token=
[2026-01-10 01:14:25]  surl=/tmp/job_11009642/atlas/pilot/slots/0/PanDA_Pilot-6963156666/log.47898826._031815.job.log.tgz.1
[2026-01-10 01:14:25]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/68/log.47898826._031815.job.log.tgz.1
[2026-01-10 01:14:25]  workdir=None
[2026-01-10 01:14:25] ]
[2026-01-10 01:14:25] 2026-01-10 00:13:47,431 | INFO     | transferring file log.47898826._031815.job.log.tgz.1 from /tmp/job_11009642/atlas/pilot/slots/0/PanDA_Pilot-6963156666/log.47898826._031815.job.log.tgz.1 to /tmp/j
[2026-01-10 01:14:25] 2026-01-10 00:13:47,431 | INFO     | executing command: /usr/bin/env mv /tmp/job_11009642/atlas/pilot/slots/0/PanDA_Pilot-6963156666/log.47898826._031815.job.log.tgz.1 /tmp/job_11009642/atlas/pilot/sl
[2026-01-10 01:14:25] 2026-01-10 00:13:47,439 | INFO     | adding to output.list: log.47898826._031815.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/ae/68/log.47898826._031815.job.log.tg
[2026-01-10 01:14:25] 2026-01-10 00:13:47,439 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 01:14:25] 2026-01-10 00:13:47,439 | INFO     | summary of transferred files:
[2026-01-10 01:14:25] 2026-01-10 00:13:47,439 | INFO     |  -- lfn=log.47898826._031815.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 01:14:25] 2026-01-10 00:13:47,439 | INFO     | stage-out finished correctly
[2026-01-10 01:14:25] 2026-01-10 00:13:48,383 | INFO     | time since job start (4309s) is within the limit (349056.0s)
[2026-01-10 01:14:25] 2026-01-10 00:13:49,017 | WARNING  | process 1610 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 01:14:25] 2026-01-10 00:13:49,017 | INFO     | using path: /tmp/job_11009642/atlas/pilot/slots/0/PanDA_Pilot-6963156666/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 01:14:25] 2026-01-10 00:13:49,114 | INFO     | number of running child processes to parent process 1610: 1
[2026-01-10 01:14:25] 2026-01-10 00:13:49,114 | INFO     | maximum number of monitored processes: 6
[2026-01-10 01:14:25] 2026-01-10 00:13:50,388 | INFO     | time since job start (4311s) is within the limit (349056.0s)
[2026-01-10 01:14:25] 2026-01-10 00:13:50,711 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 01:14:25] 2026-01-10 00:13:51,616 | INFO     | monitor loop #320: job 0:6963156666 is in state 'finished'
[2026-01-10 01:14:25] 2026-01-10 00:13:51,616 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 01:14:25] 2026-01-10 00:13:51,885 | INFO     | job 6963156666 has state=finished
[2026-01-10 01:14:25] 2026-01-10 00:13:51,885 | INFO     | preparing for final server update for job 6963156666 in state='finished'
[2026-01-10 01:14:25] 2026-01-10 00:13:52,393 | INFO     | time since job start (4313s) is within the limit (349056.0s)
[2026-01-10 01:14:25] 2026-01-10 00:13:52,460 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-01-10 01:14:25] 2026-01-10 00:13:52,460 | INFO     | this job has now completed (state=finished)
[2026-01-10 01:14:25] 2026-01-10 00:13:52,460 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 01:14:25] 2026-01-10 00:13:52,460 | INFO     | log transfer has been attempted: DONE
[2026-01-10 01:14:25] 2026-01-10 00:13:52,460 | INFO     | job 6963156666 has finished - writing final server update
[2026-01-10 01:14:25] 2026-01-10 00:13:52,460 | INFO     | total number of processed events: 400 (read)
[2026-01-10 01:14:25] 2026-01-10 00:13:52,460 | INFO     | executing command: lscpu
[2026-01-10 01:14:25] 2026-01-10 00:13:52,491 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 01:14:25] 2026-01-10 00:13:54,119 | INFO     | monitor loop #321: job 0:6963156666 is in state 'finished'
[2026-01-10 01:14:25] 2026-01-10 00:13:54,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 01:14:25] 2026-01-10 00:13:54,202 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 01:14:25] 2026-01-10 00:13:54,219 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2418.507390625
[2026-01-10 01:14:25] 2026-01-10 00:13:54,237 | INFO     | using path: /tmp/job_11009642/atlas/pilot/slots/0/PanDA_Pilot-6963156666/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 01:14:25] 2026-01-10 00:13:54,237 | INFO     | extracted standard info from prmon json
[2026-01-10 01:14:25] 2026-01-10 00:13:54,237 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 01:14:25] 2026-01-10 00:13:54,237 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 01:14:25] 2026-01-10 00:13:54,238 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 01:14:25] 2026-01-10 00:13:54,238 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | fitting pss+swap vs Time
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | sum of square deviations: 81266640.0
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | sum of deviations: 11058027235.0
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | mean x: 1768001964.5
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | mean y: 2424469.0
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | intersect: -240571246042.96536
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | chi2: 0.9311583797113739
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | current memory leak: 136.07 B/s (using 64 data points, chi2=0.93)
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | could have reported an average CPU frequency of 2584 MHz (6 samples)
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | ..............................
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | . Timing measurements:
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | . get job = 0 s
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | . initial setup = 1 s
[2026-01-10 01:14:25] 2026-01-10 00:13:54,239 | INFO     | . payload setup = 2 s
[2026-01-10 01:14:25] 2026-01-10 00:13:54,240 | INFO     | . stage-in = 0 s
[2026-01-10 01:14:25] 2026-01-10 00:13:54,240 | INFO     | . payload execution = 4288 s
[2026-01-10 01:14:25] 2026-01-10 00:13:54,240 | INFO     | . stage-out = 0 s
[2026-01-10 01:14:25] 2026-01-10 00:13:54,240 | INFO     | . log creation = 0 s
[2026-01-10 01:14:25] 2026-01-10 00:13:54,240 | INFO     | ..............................
[2026-01-10 01:14:25] 2026-01-10 00:13:54,289 | INFO     | 
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | job summary report
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | --------------------------------------------------
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | PanDA job id: 6963156666
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | task id: 47898826
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | errors: (none)
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | pilot state: finished 
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | transexitcode: 0
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | exeerrorcode: 0
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | exeerrordiag: 
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | exitcode: 0
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | exitmsg: OK
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | cpuconsumptiontime: 28112 s
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | nevents: 400
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | neventsw: 0
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | pid: 1610
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | pgrp: 1610
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | corecount: 8
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | event service: False
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | sizes: {0: 2284097, 4: 2284359, 10: 2284387, 4294: 2310454, 4295: 2319482, 4298: 2319538, 4302: 2319860}
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | --------------------------------------------------
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | 
[2026-01-10 01:14:25] 2026-01-10 00:13:54,290 | INFO     | executing command: ls -lF /tmp/job_11009642/atlas/pilot/slots/0
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,300 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,301 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,301 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,301 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,301 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,301 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 01:14:25] 2026-01-10 00:13:54,301 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,301 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 01:14:25] 2026-01-10 00:13:54,301 | INFO     | job 6963156666 has completed (purged errors)
[2026-01-10 01:14:25] 2026-01-10 00:13:54,301 | INFO     | overall cleanup function is called
[2026-01-10 01:14:25] 2026-01-10 00:13:55,307 | INFO     | --- collectZombieJob: --- 10, [1610]
[2026-01-10 01:14:25] 2026-01-10 00:13:55,307 | INFO     | zombie collector waiting for pid 1610
[2026-01-10 01:14:25] 2026-01-10 00:13:55,307 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 01:14:25] 2026-01-10 00:13:55,307 | INFO     | collected zombie processes
[2026-01-10 01:14:25] 2026-01-10 00:13:55,307 | INFO     | will attempt to kill all subprocesses of pid=1610
[2026-01-10 01:14:25] 2026-01-10 00:13:55,409 | INFO     | process IDs to be killed: [1610] (in reverse order)
[2026-01-10 01:14:25] 2026-01-10 00:13:55,446 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 01:14:25] 2026-01-10 00:13:55,446 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 01:14:25] 2026-01-10 00:13:55,449 | INFO     | did not find any defunct processes belonging to 1610
[2026-01-10 01:14:25] 2026-01-10 00:13:55,452 | INFO     | did not find any defunct processes belonging to 1610
[2026-01-10 01:14:25] 2026-01-10 00:13:55,452 | INFO     | ready for new job
[2026-01-10 01:14:25] 2026-01-10 00:13:55,452 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 01:14:25] 2026-01-10 00:13:55,453 | INFO     | ***************************************
[2026-01-10 01:14:25] 2026-01-10 00:13:55,453 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 01:14:25] 2026-01-10 00:13:55,453 | INFO     | ***************************************
[2026-01-10 01:14:25] 2026-01-10 00:13:55,453 | INFO     | 
[2026-01-10 01:14:25] 2026-01-10 00:13:55,467 | INFO     | architecture information:
[2026-01-10 01:14:25] 2026-01-10 00:13:55,468 | INFO     | executing command: cat /etc/os-release
[2026-01-10 01:14:25] 2026-01-10 00:13:55,474 | INFO     | cat /etc/os-release:
[2026-01-10 01:14:25] NAME="CentOS Linux"
[2026-01-10 01:14:25] VERSION="7 (Core)"
[2026-01-10 01:14:25] ID="centos"
[2026-01-10 01:14:25] ID_LIKE="rhel fedora"
[2026-01-10 01:14:25] VERSION_ID="7"
[2026-01-10 01:14:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 01:14:25] ANSI_COLOR="0;31"
[2026-01-10 01:14:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 01:14:25] HOME_URL="https://www.centos.org/"
[2026-01-10 01:14:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 01:14:25] 
[2026-01-10 01:14:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 01:14:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 01:14:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 01:14:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 01:14:25] 
[2026-01-10 01:14:25] 2026-01-10 00:13:55,474 | INFO     | ***************************************
[2026-01-10 01:14:25] 2026-01-10 00:13:55,976 | INFO     | executing command: df -mP /tmp/job_11009642/atlas/pilot/slots/0
[2026-01-10 01:14:25] 2026-01-10 00:13:55,982 | INFO     | sufficient remaining disk space (224034553856 B)
[2026-01-10 01:14:25] 2026-01-10 00:13:55,982 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 01:14:25] 2026-01-10 00:13:55,983 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 01:14:25] 2026-01-10 00:13:55,983 | INFO     | update_server=False
[2026-01-10 01:14:25] 2026-01-10 00:13:55,983 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 01:14:25] 2026-01-10 00:13:55,983 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:14:25] 2026-01-10 00:13:55,983 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 01:14:25] 2026-01-10 00:13:55,983 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 01:14:25] 2026-01-10 00:13:55,983 | INFO     | aborting loop
[2026-01-10 01:14:25] 2026-01-10 00:13:56,644 | INFO     | all data control threads have been joined
[2026-01-10 01:14:25] 2026-01-10 00:13:56,768 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 01:14:25] 2026-01-10 00:13:56,988 | INFO     | [job] retrieve thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:56,988 | INFO     | [job] queue monitor thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:56,988 | INFO     | [job] job monitor thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:57,065 | INFO     | [payload] failed_post thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:57,188 | INFO     | all job control threads have been joined
[2026-01-10 01:14:25] 2026-01-10 00:13:57,287 | INFO     | all payload control threads have been joined
[2026-01-10 01:14:25] 2026-01-10 00:13:57,328 | INFO     | [payload] validate_post thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:57,391 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:57,438 | INFO     | [data] copytool_in thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:57,649 | INFO     | [data] control thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:57,766 | INFO     | [job] validate thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:57,840 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:57,864 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:57,947 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:57,988 | INFO     | [data] copytool_out thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:58,193 | INFO     | [job] control thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:13:58,292 | INFO     | [payload] control thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:14:00,774 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 01:14:25] 2026-01-10 00:14:06,139 | INFO     | [monitor] cgroup control has ended
[2026-01-10 01:14:25] 2026-01-10 00:14:08,133 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456060819200)>']
[2026-01-10 01:14:25] 2026-01-10 00:14:13,158 | INFO     | all workflow threads have been joined
[2026-01-10 01:14:25] 2026-01-10 00:14:13,158 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 01:14:25] 2026-01-10 00:14:13,158 | INFO     | traces error code: 0
[2026-01-10 01:14:25] 2026-01-10 00:14:13,158 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 01:14:25] 2026-01-10 00:14:25,582 | INFO     | PID=15670 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 01:14:25] 2026-01-10 00:14:25,582 | INFO     | .. there are 4 such processes running
[2026-01-10 01:14:25] 2026-01-10 00:14:25,582 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 01:14:25] 2026-01-10 00:14:25,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 01:14:25] 2026-01-10 00:14:25,583 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 01:14:25] 2026-01-10 00:14:25,583 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 01:14:25] 2026-01-10 00:14:25,583 | INFO     | [monitor] control thread has ended
[2026-01-10 01:14:25] 2026-01-10 00:14:25,642 [wrapper] ==== pilot stdout END ====
[2026-01-10 01:14:25] 2026-01-10 00:14:25,644 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 01:14:25] 2026-01-10 00:14:25,645 [wrapper] pilotpid: 15670
[2026-01-10 01:14:25] 2026-01-10 00:14:25,646 [wrapper] Pilot exit status: 0
[2026-01-10 01:14:25] 2026-01-10 00:14:25,650 [wrapper] pandaids: 6963156666
[2026-01-10 01:14:25] 2026-01-10 00:14:25,672 [wrapper] cleanup supervisor_pilot  9345 15671
[2026-01-10 01:14:25] 2026-01-10 00:14:25,674 [wrapper] Test setup, not cleaning
[2026-01-10 01:14:25] 2026-01-10 00:14:25,675 [wrapper] apfmon messages muted
[2026-01-10 01:14:25] 2026-01-10 00:14:25,676 [wrapper] ==== wrapper stdout END ====
[2026-01-10 01:14:25] 2026-01-10 00:14:25,677 [wrapper] ==== wrapper stderr END ====
[2026-01-10 01:14:25]  *** Error codes and diagnostics ***
[2026-01-10 01:14:25]     "exeErrorCode": 0,
[2026-01-10 01:14:25]     "exeErrorDiag": "",
[2026-01-10 01:14:25]     "pilotErrorCode": 0,
[2026-01-10 01:14:25]     "pilotErrorDiag": "",
[2026-01-10 01:14:25]  *** Listing of results directory ***
[2026-01-10 01:14:25] total 439604
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user    579449 Jan  8 22:44 pilot3.tar.gz
[2026-01-10 01:14:25] -rwx------ 1 mf493845 unix-user     36322 Jan  8 22:48 runpilot2-wrapper.sh
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user      5112 Jan  8 22:50 queuedata.json
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user       100 Jan  9 23:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 01:14:25] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan  9 23:04 run_atlas
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user       105 Jan  9 23:04 job.xml
[2026-01-10 01:14:25] -rw-r--r-- 2 mf493845 unix-user 225645848 Jan 10 00:01 EVNT.47898824._001208.pool.root.1
[2026-01-10 01:14:25] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 00:01 start_atlas.sh
[2026-01-10 01:14:25] drwxrwx--x 2 mf493845 unix-user       100 Jan 10 00:01 shared
[2026-01-10 01:14:25] -rw-r--r-- 2 mf493845 unix-user    592399 Jan 10 00:01 input.tar.gz
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user      6391 Jan 10 00:01 init_data.xml
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user         0 Jan 10 00:01 boinc_setup_complete
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user      8192 Jan 10 00:01 boinc_mmap_file
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user         0 Jan 10 00:01 boinc_lockfile
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user      2520 Jan 10 00:01 pandaJob.out
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user    989375 Jan 10 00:01 agis_schedconf.cvmfs.json
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user   1516240 Jan 10 00:01 agis_ddmendpoints.agis.ALL.json
[2026-01-10 01:14:25] drwx------ 5 mf493845 unix-user       440 Jan 10 00:02 pilot3
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user 218660713 Jan 10 01:13 HITS.47898826._031815.pool.root.1
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user      1016 Jan 10 01:13 memory_monitor_summary.json
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user    324672 Jan 10 01:13 log.47898826._031815.job.log.tgz.1
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user      7772 Jan 10 01:13 heartbeat.json
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user       820 Jan 10 01:14 pilotlog.txt
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user        95 Jan 10 01:14 pilot_heartbeat.json
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user    656522 Jan 10 01:14 log.47898826._031815.job.log.1
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user       357 Jan 10 01:14 output.list
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user       620 Jan 10 01:14 runtime_log
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user   1003520 Jan 10 01:14 result.tar.gz
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user      9220 Jan 10 01:14 runtime_log.err
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user       643 Jan 10 01:14 hL0MDmL3Cy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmcalKDmiZvmKo.diag
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user     22388 Jan 10 01:14 stderr.txt
[2026-01-10 01:14:25] HITS file was successfully produced:
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user 218660713 Jan 10 01:13 shared/HITS.pool.root.1
[2026-01-10 01:14:25]  *** Contents of shared directory: ***
[2026-01-10 01:14:25] total 435472
[2026-01-10 01:14:25] -rw-r--r-- 2 mf493845 unix-user 225645848 Jan 10 00:01 ATLAS.root_0
[2026-01-10 01:14:25] -rw-r--r-- 2 mf493845 unix-user     15847 Jan 10 00:01 start_atlas.sh
[2026-01-10 01:14:25] -rw-r--r-- 2 mf493845 unix-user    592399 Jan 10 00:01 input.tar.gz
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user 218660713 Jan 10 01:13 HITS.pool.root.1
[2026-01-10 01:14:25] -rw------- 1 mf493845 unix-user   1003520 Jan 10 01:14 result.tar.gz
01:14:27 (22293): run_atlas exited; CPU time 28169.751982
01:14:27 (22293): called boinc_finish(0)

</stderr_txt>
]]>

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