Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
18:20:35 (3165357): wrapper (7.7.26015): starting
18:20:35 (3165357): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 18:20:35] Arguments: --nthreads 8
[2026-01-09 18:20:35] Threads: 8
[2026-01-09 18:20:35] Checking for CVMFS
[2026-01-09 18:20:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 18:20:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 18:20:36] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 18:20:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 18:20:36] 2.13.3.0 6968 23530 223460 154961 0 339 23234356 40960000 23817 16776704 0 82668954 99.597 88749757 34837 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 18:20:36] CVMFS is ok
[2026-01-09 18:20:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 18:20:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 18:20:36] Further information can be found at the LHC@home message board.
[2026-01-09 18:20:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 18:20:36] Checking for apptainer binary...
[2026-01-09 18:20:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 18:20:36] Running /usr/bin/apptainer --version
[2026-01-09 18:20:36] apptainer version 1.4.5-2.el9
[2026-01-09 18:20:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 18:20:36] c-212-5.aglt2.org
[2026-01-09 18:20:36] apptainer works
[2026-01-09 18:20:36] Set ATHENA_PROC_NUMBER=8
[2026-01-09 18:20:36] Set ATHENA_CORE_NUMBER=8
[2026-01-09 18:20:36] Starting ATLAS job with PandaID=6962931111
[2026-01-09 18:20:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
20:40:10 (3165357): BOINC client no longer exists - exiting
20:40:10 (3165357): timer handler: client dead, exiting
20:47:14 (3724086): wrapper (7.7.26015): starting
20:47:14 (3724086): wrapper: running run_atlas (--nthreads 9)
[2026-01-09 20:47:14] Arguments: --nthreads 9
[2026-01-09 20:47:14] Threads: 9
[2026-01-09 20:47:14] This job has been restarted, cleaning up previous attempt
[2026-01-09 20:47:14] Checking for CVMFS
[2026-01-09 20:47:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 20:47:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 20:47:14] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 20:47:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 20:47:14] 2.13.3.0 6968 23676 215760 154963 1 177 24914821 40960001 17033 16776704 0 83055921 99.598 88815779 34833 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 20:47:14] CVMFS is ok
[2026-01-09 20:47:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 20:47:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 20:47:14] Further information can be found at the LHC@home message board.
[2026-01-09 20:47:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 20:47:14] Checking for apptainer binary...
[2026-01-09 20:47:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 20:47:14] Running /usr/bin/apptainer --version
[2026-01-09 20:47:14] apptainer version 1.4.5-2.el9
[2026-01-09 20:47:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 20:47:15] c-212-5.aglt2.org
[2026-01-09 20:47:15] apptainer works
[2026-01-09 20:47:15] Set ATHENA_PROC_NUMBER=9
[2026-01-09 20:47:15] Set ATHENA_CORE_NUMBER=9
[2026-01-09 20:47:15] Starting ATLAS job with PandaID=6962931111
[2026-01-09 20:47:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 02:09:25]  *** The last 200 lines of the pilot log: ***
[2026-01-10 02:09:25] 2026-01-10 07:08:52,267 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 02:09:25] 2026-01-10 07:08:52,273 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3215.5971041666667
[2026-01-10 02:09:25] 2026-01-10 07:08:52,285 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6962931111/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 02:09:25] 2026-01-10 07:08:52,286 | INFO     | extracted standard info from prmon json
[2026-01-10 02:09:25] 2026-01-10 07:08:52,286 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 02:09:25] 2026-01-10 07:08:52,286 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 02:09:25] 2026-01-10 07:08:52,289 | INFO     | fitting pss+swap vs Time
[2026-01-10 02:09:25] 2026-01-10 07:08:52,290 | INFO     | sum of square deviations: 9783940791.958841
[2026-01-10 02:09:25] 2026-01-10 07:08:52,291 | INFO     | sum of deviations: 191960897795.93344
[2026-01-10 02:09:25] 2026-01-10 07:08:52,291 | INFO     | mean x: 1768019293.0981014
[2026-01-10 02:09:25] 2026-01-10 07:08:52,291 | INFO     | mean y: 2720386.389240506
[2026-01-10 02:09:25] 2026-01-10 07:08:52,291 | INFO     | intersect: -34685814432.07359
[2026-01-10 02:09:25] 2026-01-10 07:08:52,292 | INFO     | chi2: 3.9704093036461443
[2026-01-10 02:09:25] 2026-01-10 07:08:52,292 | INFO     | sum of square deviations: 9326854980.14146
[2026-01-10 02:09:25] 2026-01-10 07:08:52,293 | INFO     | sum of deviations: 255689519886.74606
[2026-01-10 02:09:25] 2026-01-10 07:08:52,293 | INFO     | mean x: 1768019140.607717
[2026-01-10 02:09:25] 2026-01-10 07:08:52,293 | INFO     | mean y: 2741583.0225080387
[2026-01-10 02:09:25] 2026-01-10 07:08:52,293 | INFO     | intersect: -48466326090.388245
[2026-01-10 02:09:25] 2026-01-10 07:08:52,294 | INFO     | chi2: 2.4109598712081834
[2026-01-10 02:09:25] 2026-01-10 07:08:52,294 | INFO     | current chi2=2.4109598712081834 (change=39.27679272275209 %)
[2026-01-10 02:09:25] 2026-01-10 07:08:52,294 | INFO     | sum of square deviations: 8884234555.76466
[2026-01-10 02:09:25] 2026-01-10 07:08:52,295 | INFO     | sum of deviations: 268201473369.47055
[2026-01-10 02:09:25] 2026-01-10 07:08:52,295 | INFO     | mean x: 1768018988.1176472
[2026-01-10 02:09:25] 2026-01-10 07:08:52,295 | INFO     | mean y: 2745848.820261438
[2026-01-10 02:09:25] 2026-01-10 07:08:52,295 | INFO     | intersect: -53371047310.50957
[2026-01-10 02:09:25] 2026-01-10 07:08:52,295 | INFO     | chi2: 2.215895477395306
[2026-01-10 02:09:25] 2026-01-10 07:08:52,296 | INFO     | current chi2=2.215895477395306 (change=8.090735816151366 %)
[2026-01-10 02:09:25] 2026-01-10 07:08:52,296 | INFO     | right removable region: 305
[2026-01-10 02:09:25] 2026-01-10 07:08:52,296 | INFO     | sum of square deviations: 9326739690.14146
[2026-01-10 02:09:25] 2026-01-10 07:08:52,297 | INFO     | sum of deviations: 113044783083.87465
[2026-01-10 02:09:25] 2026-01-10 07:08:52,297 | INFO     | mean x: 1768019445.607717
[2026-01-10 02:09:25] 2026-01-10 07:08:52,297 | INFO     | mean y: 2746599.302250804
[2026-01-10 02:09:25] 2026-01-10 07:08:52,297 | INFO     | intersect: -21426539663.297977
[2026-01-10 02:09:25] 2026-01-10 07:08:52,297 | INFO     | chi2: 1.8130682769834425
[2026-01-10 02:09:25] 2026-01-10 07:08:52,298 | INFO     | current chi2=1.8130682769834425 (change=54.335481852753865 %)
[2026-01-10 02:09:25] 2026-01-10 07:08:52,298 | INFO     | sum of square deviations: 8884022702.996754
[2026-01-10 02:09:25] 2026-01-10 07:08:52,299 | INFO     | sum of deviations: 99064891213.41846
[2026-01-10 02:09:25] 2026-01-10 07:08:52,299 | INFO     | mean x: 1768019598.1143792
[2026-01-10 02:09:25] 2026-01-10 07:08:52,299 | INFO     | mean y: 2751413.359477124
[2026-01-10 02:09:25] 2026-01-10 07:08:52,300 | INFO     | intersect: -19712266772.187454
[2026-01-10 02:09:25] 2026-01-10 07:08:52,300 | INFO     | chi2: 1.7956124553906694
[2026-01-10 02:09:25] 2026-01-10 07:08:52,300 | INFO     | current chi2=1.7956124553906694 (change=0.9627779501947878 %)
[2026-01-10 02:09:25] 2026-01-10 07:08:52,300 | INFO     | left removable region: 20
[2026-01-10 02:09:25] 2026-01-10 07:08:52,300 | INFO     | sum of square deviations: 7177517652.301736
[2026-01-10 02:09:25] 2026-01-10 07:08:52,301 | INFO     | sum of deviations: 150199389643.50174
[2026-01-10 02:09:25] 2026-01-10 07:08:52,301 | INFO     | mean x: 1768019567.6561403
[2026-01-10 02:09:25] 2026-01-10 07:08:52,301 | INFO     | mean y: 2787490.056140351
[2026-01-10 02:09:25] 2026-01-10 07:08:52,302 | INFO     | intersect: -36995444044.0119
[2026-01-10 02:09:25] 2026-01-10 07:08:52,302 | INFO     | chi2: 0.014815927327362059
[2026-01-10 02:09:25] 2026-01-10 07:08:52,302 | INFO     | current memory leak: 20.93 B/s (using 285 data points, chi2=0.01)
[2026-01-10 02:09:25] 2026-01-10 07:08:52,302 | INFO     | could have reported an average CPU frequency of 3235 MHz (14 samples)
[2026-01-10 02:09:25] 2026-01-10 07:08:52,302 | INFO     | ..............................
[2026-01-10 02:09:25] 2026-01-10 07:08:52,302 | INFO     | . Timing measurements:
[2026-01-10 02:09:25] 2026-01-10 07:08:52,303 | INFO     | . get job = 0 s
[2026-01-10 02:09:25] 2026-01-10 07:08:52,303 | INFO     | . initial setup = 1 s
[2026-01-10 02:09:25] 2026-01-10 07:08:52,303 | INFO     | . payload setup = 8 s
[2026-01-10 02:09:25] 2026-01-10 07:08:52,303 | INFO     | . stage-in = 0 s
[2026-01-10 02:09:25] 2026-01-10 07:08:52,303 | INFO     | . payload execution = 19245 s
[2026-01-10 02:09:25] 2026-01-10 07:08:52,303 | INFO     | . stage-out = 1 s
[2026-01-10 02:09:25] 2026-01-10 07:08:52,303 | INFO     | . log creation = 0 s
[2026-01-10 02:09:25] 2026-01-10 07:08:52,303 | INFO     | ..............................
[2026-01-10 02:09:25] 2026-01-10 07:08:52,359 | INFO     | 
[2026-01-10 02:09:25] 2026-01-10 07:08:52,359 | INFO     | job summary report
[2026-01-10 02:09:25] 2026-01-10 07:08:52,359 | INFO     | --------------------------------------------------
[2026-01-10 02:09:25] 2026-01-10 07:08:52,360 | INFO     | PanDA job id: 6962931111
[2026-01-10 02:09:25] 2026-01-10 07:08:52,360 | INFO     | task id: 47961959
[2026-01-10 02:09:25] 2026-01-10 07:08:52,360 | INFO     | errors: (none)
[2026-01-10 02:09:25] 2026-01-10 07:08:52,360 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 02:09:25] 2026-01-10 07:08:52,360 | INFO     | pilot state: finished 
[2026-01-10 02:09:25] 2026-01-10 07:08:52,360 | INFO     | transexitcode: 0
[2026-01-10 02:09:25] 2026-01-10 07:08:52,360 | INFO     | exeerrorcode: 0
[2026-01-10 02:09:25] 2026-01-10 07:08:52,360 | INFO     | exeerrordiag: 
[2026-01-10 02:09:25] 2026-01-10 07:08:52,360 | INFO     | exitcode: 0
[2026-01-10 02:09:25] 2026-01-10 07:08:52,360 | INFO     | exitmsg: OK
[2026-01-10 02:09:25] 2026-01-10 07:08:52,361 | INFO     | cpuconsumptiontime: 38069 s
[2026-01-10 02:09:25] 2026-01-10 07:08:52,361 | INFO     | nevents: 150
[2026-01-10 02:09:25] 2026-01-10 07:08:52,361 | INFO     | neventsw: 0
[2026-01-10 02:09:25] 2026-01-10 07:08:52,361 | INFO     | pid: 3766490
[2026-01-10 02:09:25] 2026-01-10 07:08:52,361 | INFO     | pgrp: 3766490
[2026-01-10 02:09:25] 2026-01-10 07:08:52,361 | INFO     | corecount: 9
[2026-01-10 02:09:25] 2026-01-10 07:08:52,361 | INFO     | event service: False
[2026-01-10 02:09:25] 2026-01-10 07:08:52,361 | INFO     | sizes: {0: 2284271, 1: 2284526, 7: 2284788, 12: 2284816, 19257: 2318960, 19260: 2328138, 19266: 2328328}
[2026-01-10 02:09:25] 2026-01-10 07:08:52,361 | INFO     | --------------------------------------------------
[2026-01-10 02:09:25] 2026-01-10 07:08:52,361 | INFO     | 
[2026-01-10 02:09:25] 2026-01-10 07:08:52,362 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-10 02:09:25] 2026-01-10 07:08:52,381 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,381 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,381 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,381 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,381 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,382 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,382 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,382 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,382 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,382 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,382 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,382 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,383 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,383 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,383 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,383 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,383 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,383 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 02:09:25] 2026-01-10 07:08:52,384 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,384 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 02:09:25] 2026-01-10 07:08:52,384 | INFO     | job 6962931111 has completed (purged errors)
[2026-01-10 02:09:25] 2026-01-10 07:08:52,384 | INFO     | overall cleanup function is called
[2026-01-10 02:09:25] 2026-01-10 07:08:52,825 | INFO     | PID=3739481 has CPU usage=10.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-01-10 02:09:25] 2026-01-10 07:08:52,826 | INFO     | .. there are 19 such processes running
[2026-01-10 02:09:25] 2026-01-10 07:08:53,410 | INFO     | --- collectZombieJob: --- 10, [3766490]
[2026-01-10 02:09:25] 2026-01-10 07:08:53,410 | INFO     | zombie collector waiting for pid 3766490
[2026-01-10 02:09:25] 2026-01-10 07:08:53,411 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 02:09:25] 2026-01-10 07:08:53,411 | INFO     | collected zombie processes
[2026-01-10 02:09:25] 2026-01-10 07:08:53,411 | INFO     | will attempt to kill all subprocesses of pid=3766490
[2026-01-10 02:09:25] 2026-01-10 07:08:53,851 | INFO     | process IDs to be killed: [3766490] (in reverse order)
[2026-01-10 02:09:25] 2026-01-10 07:08:53,975 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 02:09:25] 2026-01-10 07:08:53,976 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 02:09:25] 2026-01-10 07:08:53,988 | INFO     | did not find any defunct processes belonging to 3766490
[2026-01-10 02:09:25] 2026-01-10 07:08:54,005 | INFO     | did not find any defunct processes belonging to 3766490
[2026-01-10 02:09:25] 2026-01-10 07:08:54,006 | INFO     | ready for new job
[2026-01-10 02:09:25] 2026-01-10 07:08:54,006 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 02:09:25] 2026-01-10 07:08:54,008 | INFO     | ***************************************
[2026-01-10 02:09:25] 2026-01-10 07:08:54,008 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 02:09:25] 2026-01-10 07:08:54,008 | INFO     | ***************************************
[2026-01-10 02:09:25] 2026-01-10 07:08:54,008 | INFO     | 
[2026-01-10 02:09:25] 2026-01-10 07:08:54,012 | INFO     | architecture information:
[2026-01-10 02:09:25] 2026-01-10 07:08:54,013 | INFO     | executing command: cat /etc/os-release
[2026-01-10 02:09:25] 2026-01-10 07:08:54,029 | INFO     | cat /etc/os-release:
[2026-01-10 02:09:25] NAME="CentOS Linux"
[2026-01-10 02:09:25] VERSION="7 (Core)"
[2026-01-10 02:09:25] ID="centos"
[2026-01-10 02:09:25] ID_LIKE="rhel fedora"
[2026-01-10 02:09:25] VERSION_ID="7"
[2026-01-10 02:09:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 02:09:25] ANSI_COLOR="0;31"
[2026-01-10 02:09:25] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 02:09:25] HOME_URL="https://www.centos.org/"
[2026-01-10 02:09:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 02:09:25] 
[2026-01-10 02:09:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 02:09:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 02:09:25] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 02:09:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 02:09:25] 
[2026-01-10 02:09:25] 2026-01-10 07:08:54,029 | INFO     | ***************************************
[2026-01-10 02:09:25] 2026-01-10 07:08:54,531 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-10 02:09:25] 2026-01-10 07:08:54,549 | INFO     | sufficient remaining disk space (127844483072 B)
[2026-01-10 02:09:25] 2026-01-10 07:08:54,550 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 02:09:25] 2026-01-10 07:08:54,550 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 02:09:25] 2026-01-10 07:08:54,550 | INFO     | update_server=False
[2026-01-10 02:09:25] 2026-01-10 07:08:54,550 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 02:09:25] 2026-01-10 07:08:54,550 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 02:09:25] 2026-01-10 07:08:54,669 | INFO     | all data control threads have been joined
[2026-01-10 02:09:25] 2026-01-10 07:08:55,029 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 02:09:25] 2026-01-10 07:08:55,029 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 02:09:25] 2026-01-10 07:08:55,030 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:09:25] 2026-01-10 07:08:55,030 | INFO     | will abort loop
[2026-01-10 02:09:25] 2026-01-10 07:08:55,093 | INFO     | all job control threads have been joined
[2026-01-10 02:09:25] 2026-01-10 07:08:55,555 | INFO     | [job] retrieve thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:55,674 | INFO     | [data] control thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:55,752 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:55,919 | INFO     | [payload] failed_post thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:55,927 | INFO     | [job] validate thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:56,022 | INFO     | all payload control threads have been joined
[2026-01-10 02:09:25] 2026-01-10 07:08:56,034 | INFO     | [job] job monitor thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:56,081 | INFO     | [payload] validate_post thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:56,100 | INFO     | [job] control thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:56,160 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:56,283 | INFO     | [data] copytool_in thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:56,504 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:56,556 | INFO     | [data] copytool_out thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:56,806 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:57,028 | INFO     | [payload] control thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:08:57,370 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 02:09:25] 2026-01-10 07:08:57,396 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 02:09:25] 2026-01-10 07:08:58,376 | INFO     | [job] queue monitor thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:09:01,293 | INFO     | [monitor] cgroup control has ended
[2026-01-10 02:09:25] 2026-01-10 07:09:01,401 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 02:09:25] 2026-01-10 07:09:02,067 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139677521172288)>', '<ExcThread(monitor, started 139677159909120)>']
[2026-01-10 02:09:25] 2026-01-10 07:09:07,097 | INFO     | all workflow threads have been joined
[2026-01-10 02:09:25] 2026-01-10 07:09:07,100 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 02:09:25] 2026-01-10 07:09:07,101 | INFO     | traces error code: 0
[2026-01-10 02:09:25] 2026-01-10 07:09:07,101 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 02:09:25] 2026-01-10 07:09:25,401 | INFO     | PID=3739481 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 02:09:25] 2026-01-10 07:09:25,401 | INFO     | .. there are 19 such processes running
[2026-01-10 02:09:25] 2026-01-10 07:09:25,401 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 02:09:25] 2026-01-10 07:09:25,402 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 02:09:25] 2026-01-10 07:09:25,402 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 02:09:25] 2026-01-10 07:09:25,402 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 02:09:25] 2026-01-10 07:09:25,402 | INFO     | [monitor] control thread has ended
[2026-01-10 02:09:25] 2026-01-10 07:09:25,513 [wrapper] ==== pilot stdout END ====
[2026-01-10 02:09:25] 2026-01-10 07:09:25,530 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 02:09:25] 2026-01-10 07:09:25,536 [wrapper] pilotpid: 3739481
[2026-01-10 02:09:25] 2026-01-10 07:09:25,541 [wrapper] Pilot exit status: 0
[2026-01-10 02:09:25] 2026-01-10 07:09:25,556 [wrapper] pandaids: 6962931111 6962931111
[2026-01-10 02:09:25] 2026-01-10 07:09:25,665 [wrapper] cleanup supervisor_pilot  723149 3739482
[2026-01-10 02:09:25] 2026-01-10 07:09:25,668 [wrapper] Test setup, not cleaning
[2026-01-10 02:09:25] 2026-01-10 07:09:25,671 [wrapper] apfmon messages muted
[2026-01-10 02:09:25] 2026-01-10 07:09:25,674 [wrapper] ==== wrapper stdout END ====
[2026-01-10 02:09:25] 2026-01-10 07:09:25,678 [wrapper] ==== wrapper stderr END ====
[2026-01-10 02:09:25]  *** Error codes and diagnostics ***
[2026-01-10 02:09:25]     "exeErrorCode": 0,
[2026-01-10 02:09:25]     "exeErrorDiag": "",
[2026-01-10 02:09:25]     "pilotErrorCode": 0,
[2026-01-10 02:09:25]     "pilotErrorDiag": "",
[2026-01-10 02:09:25]  *** Listing of results directory ***
[2026-01-10 02:09:25] total 964668
[2026-01-10 02:09:25] drwx------. 5 boincer umatlas      4096 Dec  3 09:30 pilot3
[2026-01-10 02:09:25] -rwx------. 1 boincer umatlas     36322 Jan  8 03:17 runpilot2-wrapper.sh
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 03:23 queuedata.json
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 03:23 pilot3.tar.gz
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas       100 Jan  9 18:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 02:09:25] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 18:20 run_atlas
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas       105 Jan  9 18:20 job.xml
[2026-01-10 02:09:25] -rw-r--r--. 3 boincer umatlas 413818997 Jan  9 18:20 EVNT.47961955._000018.pool.root.1
[2026-01-10 02:09:25] -rw-r--r--. 3 boincer umatlas 413818997 Jan  9 18:20 ATLAS.root_0
[2026-01-10 02:09:25] -rw-r--r--. 2 boincer umatlas    592610 Jan  9 18:20 input.tar.gz
[2026-01-10 02:09:25] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 18:20 start_atlas.sh
[2026-01-10 02:09:25] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 18:20 shared
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas         0 Jan  9 18:20 boinc_lockfile
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas      2875 Jan  9 20:47 pandaJob.out
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas        57 Jan  9 20:47 setup.sh.local
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas    989382 Jan  9 20:47 agis_schedconf.cvmfs.json
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas       532 Jan 10 01:58 boinc_task_state.xml
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas      6957 Jan 10 02:04 init_data.xml
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas 147934982 Jan 10 02:08 HITS.47961959._000306.pool.root.1
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas      1052 Jan 10 02:08 memory_monitor_summary.json
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas   1516240 Jan 10 02:08 agis_ddmendpoints.agis.ALL.json
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas   1517398 Jan 10 02:08 log.47961959._000306.job.log.tgz.1
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas      8573 Jan 10 02:08 heartbeat.json
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 02:09 boinc_mmap_file
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas        28 Jan 10 02:09 wrapper_checkpoint.txt
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas       823 Jan 10 02:09 pilotlog.txt
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas        96 Jan 10 02:09 pilot_heartbeat.json
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas   2643721 Jan 10 02:09 log.47961959._000306.job.log.1
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas       353 Jan 10 02:09 output.list
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas       620 Jan 10 02:09 runtime_log
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas   4177920 Jan 10 02:09 result.tar.gz
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas       785 Jan 10 02:09 U2iLDmPO0x8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmioeKDmaXhANo.diag
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas      9423 Jan 10 02:09 runtime_log.err
[2026-01-10 02:09:25] -rw-r--r--. 1 boincer umatlas     23550 Jan 10 02:09 stderr.txt
[2026-01-10 02:09:25] HITS file was successfully produced:
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas 147934982 Jan 10 02:08 shared/HITS.pool.root.1
[2026-01-10 02:09:25]  *** Contents of shared directory: ***
[2026-01-10 02:09:25] total 553276
[2026-01-10 02:09:25] -rw-r--r--. 3 boincer umatlas 413818997 Jan  9 18:20 ATLAS.root_0
[2026-01-10 02:09:25] -rw-r--r--. 2 boincer umatlas    592610 Jan  9 18:20 input.tar.gz
[2026-01-10 02:09:25] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 18:20 start_atlas.sh
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas 147934982 Jan 10 02:08 HITS.pool.root.1
[2026-01-10 02:09:25] -rw-------. 1 boincer umatlas   4177920 Jan 10 02:09 result.tar.gz
02:09:27 (3724086): run_atlas exited; CPU time 38307.944959
02:09:27 (3724086): called boinc_finish(0)

</stderr_txt>
]]>

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