Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:25:39 (3549531): wrapper (7.7.26015): starting
16:25:39 (3549531): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 16:25:39] Arguments: --nthreads 8
[2026-01-09 16:25:39] Threads: 8
[2026-01-09 16:25:39] Checking for CVMFS
[2026-01-09 16:25:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 16:25:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 16:25:39] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 16:25:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 16:25:41] 2.13.3.0 7314 93886 154816 154957 1 632 29596846 40960000 31686 16776704 0 1157101826 99.709 873241525 49774 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 16:25:41] CVMFS is ok
[2026-01-09 16:25:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 16:25:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 16:25:41] Further information can be found at the LHC@home message board.
[2026-01-09 16:25:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 16:25:41] Checking for apptainer binary...
[2026-01-09 16:25:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 16:25:41] Running /usr/bin/apptainer --version
[2026-01-09 16:25:41] apptainer version 1.4.5-2.el9
[2026-01-09 16:25:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 16:25:41] c8-16-1.aglt2.org
[2026-01-09 16:25:41] apptainer works
[2026-01-09 16:25:41] Set ATHENA_PROC_NUMBER=8
[2026-01-09 16:25:41] Set ATHENA_CORE_NUMBER=8
[2026-01-09 16:25:42] Starting ATLAS job with PandaID=6963194367
[2026-01-09 16:25:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 19:32:34]  *** The last 200 lines of the pilot log: ***
[2026-01-09 19:32:34] 2026-01-10 00:31:36,255 | INFO     | .. there are 28 such processes running
[2026-01-09 19:32:34] 2026-01-10 00:31:36,848 | INFO     | monitor loop #698: job 0:6963194367 is in state 'finished'
[2026-01-09 19:32:34] 2026-01-10 00:31:36,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:32:34] 2026-01-10 00:31:37,255 | INFO     | time since job start (11068s) is within the limit (349056.0s)
[2026-01-09 19:32:34] 2026-01-10 00:31:39,262 | INFO     | time since job start (11070s) is within the limit (349056.0s)
[2026-01-09 19:32:34] 2026-01-10 00:31:39,353 | INFO     | monitor loop #699: job 0:6963194367 is in state 'finished'
[2026-01-09 19:32:34] 2026-01-10 00:31:39,354 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 19:32:34] 2026-01-10 00:31:40,209 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 19:32:34] 2026-01-10 00:31:40,217 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3799.9947421875004
[2026-01-09 19:32:34] 2026-01-10 00:31:40,234 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6963194367/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 19:32:34] 2026-01-10 00:31:40,234 | INFO     | extracted standard info from prmon json
[2026-01-09 19:32:34] 2026-01-10 00:31:40,235 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 19:32:34] 2026-01-10 00:31:40,236 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 19:32:34] 2026-01-10 00:31:40,237 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 19:32:34] 2026-01-10 00:31:40,237 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 19:32:34] 2026-01-10 00:31:40,239 | INFO     | fitting pss+swap vs Time
[2026-01-09 19:32:34] 2026-01-10 00:31:40,239 | INFO     | sum of square deviations: 1778364725.7988853
[2026-01-09 19:32:34] 2026-01-10 00:31:40,240 | INFO     | sum of deviations: 25309799724.284897
[2026-01-09 19:32:34] 2026-01-10 00:31:40,240 | INFO     | mean x: 1767999619.0335195
[2026-01-09 19:32:34] 2026-01-10 00:31:40,240 | INFO     | mean y: 2450566.4525139667
[2026-01-09 19:32:34] 2026-01-10 00:31:40,240 | INFO     | intersect: -25159832300.04361
[2026-01-09 19:32:34] 2026-01-10 00:31:40,240 | INFO     | chi2: 6.044879761388597
[2026-01-09 19:32:34] 2026-01-10 00:31:40,240 | INFO     | sum of square deviations: 1633461513.2931082
[2026-01-09 19:32:34] 2026-01-10 00:31:40,241 | INFO     | sum of deviations: 47830201667.75861
[2026-01-09 19:32:34] 2026-01-10 00:31:40,241 | INFO     | mean x: 1767999466.5344827
[2026-01-09 19:32:34] 2026-01-10 00:31:40,241 | INFO     | mean y: 2473857.206896552
[2026-01-09 19:32:34] 2026-01-10 00:31:40,241 | INFO     | intersect: -51767200753.828674
[2026-01-09 19:32:34] 2026-01-10 00:31:40,241 | INFO     | chi2: 4.611058388990325
[2026-01-09 19:32:34] 2026-01-10 00:31:40,241 | INFO     | current chi2=4.611058388990325 (change=23.719601199625888 %)
[2026-01-09 19:32:34] 2026-01-10 00:31:40,241 | INFO     | right removable region: 173
[2026-01-09 19:32:34] 2026-01-10 00:31:40,241 | INFO     | sum of square deviations: 1633457853.2931082
[2026-01-09 19:32:34] 2026-01-10 00:31:40,242 | INFO     | sum of deviations: -31322657982.43103
[2026-01-09 19:32:34] 2026-01-10 00:31:40,242 | INFO     | mean x: 1767999771.5344827
[2026-01-09 19:32:34] 2026-01-10 00:31:40,242 | INFO     | mean y: 2510036.488505747
[2026-01-09 19:32:34] 2026-01-10 00:31:40,242 | INFO     | intersect: 33905100204.423298
[2026-01-09 19:32:34] 2026-01-10 00:31:40,242 | INFO     | chi2: 2.067326290721997
[2026-01-09 19:32:34] 2026-01-10 00:31:40,242 | INFO     | current chi2=2.067326290721997 (change=65.8003736662067 %)
[2026-01-09 19:32:34] 2026-01-10 00:31:40,242 | INFO     | sum of square deviations: 1496644155.7869768
[2026-01-09 19:32:34] 2026-01-10 00:31:40,243 | INFO     | sum of deviations: -46051171350.77513
[2026-01-09 19:32:34] 2026-01-10 00:31:40,243 | INFO     | mean x: 1767999924.035503
[2026-01-09 19:32:34] 2026-01-10 00:31:40,243 | INFO     | mean y: 2526296.2958579883
[2026-01-09 19:32:34] 2026-01-10 00:31:40,243 | INFO     | intersect: 54403211412.46116
[2026-01-09 19:32:34] 2026-01-10 00:31:40,243 | INFO     | chi2: 1.6655926251178643
[2026-01-09 19:32:34] 2026-01-10 00:31:40,243 | INFO     | current chi2=1.6655926251178643 (change=19.432523419601583 %)
[2026-01-09 19:32:34] 2026-01-10 00:31:40,243 | INFO     | left removable region: 20
[2026-01-09 19:32:34] 2026-01-10 00:31:40,243 | INFO     | sum of square deviations: 1110531722.8366048
[2026-01-09 19:32:34] 2026-01-10 00:31:40,244 | INFO     | sum of deviations: -18497523792.53594
[2026-01-09 19:32:34] 2026-01-10 00:31:40,244 | INFO     | mean x: 1768000046.0326798
[2026-01-09 19:32:34] 2026-01-10 00:31:40,244 | INFO     | mean y: 2547947.3071895423
[2026-01-09 19:32:34] 2026-01-10 00:31:40,244 | INFO     | intersect: 29451164537.169247
[2026-01-09 19:32:34] 2026-01-10 00:31:40,244 | INFO     | chi2: 0.08344978339619068
[2026-01-09 19:32:34] 2026-01-10 00:31:40,244 | INFO     | current memory leak: -16.66 B/s (using 153 data points, chi2=0.08)
[2026-01-09 19:32:34] 2026-01-10 00:31:40,244 | INFO     | could have reported an average CPU frequency of 3799 MHz (10 samples)
[2026-01-09 19:32:34] 2026-01-10 00:31:40,245 | INFO     | ..............................
[2026-01-09 19:32:34] 2026-01-10 00:31:40,245 | INFO     | . Timing measurements:
[2026-01-09 19:32:34] 2026-01-10 00:31:40,245 | INFO     | . get job = 0 s
[2026-01-09 19:32:34] 2026-01-10 00:31:40,245 | INFO     | . initial setup = 11 s
[2026-01-09 19:32:34] 2026-01-10 00:31:40,245 | INFO     | . payload setup = 50 s
[2026-01-09 19:32:34] 2026-01-10 00:31:40,245 | INFO     | . stage-in = 0 s
[2026-01-09 19:32:34] 2026-01-10 00:31:40,245 | INFO     | . payload execution = 10894 s
[2026-01-09 19:32:34] 2026-01-10 00:31:40,245 | INFO     | . stage-out = 4 s
[2026-01-09 19:32:34] 2026-01-10 00:31:40,245 | INFO     | . log creation = 0 s
[2026-01-09 19:32:34] 2026-01-10 00:31:40,245 | INFO     | ..............................
[2026-01-09 19:32:34] 2026-01-10 00:31:40,297 | INFO     | 
[2026-01-09 19:32:34] 2026-01-10 00:31:40,298 | INFO     | job summary report
[2026-01-09 19:32:34] 2026-01-10 00:31:40,298 | INFO     | --------------------------------------------------
[2026-01-09 19:32:34] 2026-01-10 00:31:40,298 | INFO     | PanDA job id: 6963194367
[2026-01-09 19:32:34] 2026-01-10 00:31:40,298 | INFO     | task id: 47898826
[2026-01-09 19:32:34] 2026-01-10 00:31:40,298 | INFO     | errors: (none)
[2026-01-09 19:32:34] 2026-01-10 00:31:40,298 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 19:32:34] 2026-01-10 00:31:40,298 | INFO     | pilot state: finished 
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | transexitcode: 0
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | exeerrorcode: 0
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | exeerrordiag: 
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | exitcode: 0
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | exitmsg: OK
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | cpuconsumptiontime: 30542 s
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | nevents: 400
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | neventsw: 0
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | pid: 3592164
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | pgrp: 3592164
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | corecount: 8
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | event service: False
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | sizes: {0: 2283800, 1: 2283999, 12: 2283999, 23: 2284027, 33: 2284055, 36: 2284373, 44: 2284529, 10950: 2313784, 10956: 2322782, 10957: 2322838, 10995: 2322862}
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | --------------------------------------------------
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | 
[2026-01-09 19:32:34] 2026-01-10 00:31:40,299 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2026-01-09 19:32:34] 2026-01-10 00:31:40,358 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,358 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,358 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,358 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,358 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,358 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,358 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,358 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | job 6963194367 has completed (purged errors)
[2026-01-09 19:32:34] 2026-01-10 00:31:40,359 | INFO     | overall cleanup function is called
[2026-01-09 19:32:34] 2026-01-10 00:31:41,371 | INFO     | --- collectZombieJob: --- 10, [3592164]
[2026-01-09 19:32:34] 2026-01-10 00:31:41,371 | INFO     | zombie collector waiting for pid 3592164
[2026-01-09 19:32:34] 2026-01-10 00:31:41,371 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 19:32:34] 2026-01-10 00:31:41,371 | INFO     | collected zombie processes
[2026-01-09 19:32:34] 2026-01-10 00:31:41,371 | INFO     | will attempt to kill all subprocesses of pid=3592164
[2026-01-09 19:32:34] 2026-01-10 00:31:42,856 | INFO     | process IDs to be killed: [3592164] (in reverse order)
[2026-01-09 19:32:34] 2026-01-10 00:31:43,556 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 19:32:34] 2026-01-10 00:31:43,556 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 19:32:34] 2026-01-10 00:31:43,581 | INFO     | did not find any defunct processes belonging to 3592164
[2026-01-09 19:32:34] 2026-01-10 00:31:43,601 | INFO     | did not find any defunct processes belonging to 3592164
[2026-01-09 19:32:34] 2026-01-10 00:31:43,602 | INFO     | ready for new job
[2026-01-09 19:32:34] 2026-01-10 00:31:43,602 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 19:32:34] 2026-01-10 00:31:43,603 | INFO     | ***************************************
[2026-01-09 19:32:34] 2026-01-10 00:31:43,603 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 19:32:34] 2026-01-10 00:31:43,603 | INFO     | ***************************************
[2026-01-09 19:32:34] 2026-01-10 00:31:43,604 | INFO     | 
[2026-01-09 19:32:34] 2026-01-10 00:31:43,608 | INFO     | architecture information:
[2026-01-09 19:32:34] 2026-01-10 00:31:43,608 | INFO     | executing command: cat /etc/os-release
[2026-01-09 19:32:34] 2026-01-10 00:31:43,682 | INFO     | cat /etc/os-release:
[2026-01-09 19:32:34] NAME="CentOS Linux"
[2026-01-09 19:32:34] VERSION="7 (Core)"
[2026-01-09 19:32:34] ID="centos"
[2026-01-09 19:32:34] ID_LIKE="rhel fedora"
[2026-01-09 19:32:34] VERSION_ID="7"
[2026-01-09 19:32:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 19:32:34] ANSI_COLOR="0;31"
[2026-01-09 19:32:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 19:32:34] HOME_URL="https://www.centos.org/"
[2026-01-09 19:32:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 19:32:34] 
[2026-01-09 19:32:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 19:32:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 19:32:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 19:32:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 19:32:34] 
[2026-01-09 19:32:34] 2026-01-10 00:31:43,682 | INFO     | ***************************************
[2026-01-09 19:32:34] 2026-01-10 00:31:44,186 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2026-01-09 19:32:34] 2026-01-10 00:31:44,296 | INFO     | sufficient remaining disk space (166798032896 B)
[2026-01-09 19:32:34] 2026-01-10 00:31:44,296 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 19:32:34] 2026-01-10 00:31:44,297 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 19:32:34] 2026-01-10 00:31:44,297 | INFO     | update_server=False
[2026-01-09 19:32:34] 2026-01-10 00:31:44,297 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 19:32:34] 2026-01-10 00:31:44,297 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 19:32:34] 2026-01-10 00:31:44,297 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 19:32:34] 2026-01-10 00:31:44,397 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 19:32:34] 2026-01-10 00:31:44,400 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 19:32:34] 2026-01-10 00:31:44,401 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:32:34] 2026-01-10 00:31:44,401 | INFO     | will abort loop
[2026-01-09 19:32:34] 2026-01-10 00:31:44,452 | INFO     | all data control threads have been joined
[2026-01-09 19:32:34] 2026-01-10 00:31:45,115 | INFO     | all job control threads have been joined
[2026-01-09 19:32:34] 2026-01-10 00:31:45,302 | INFO     | [job] retrieve thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:45,322 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 19:32:34] 2026-01-10 00:31:45,406 | INFO     | [job] job monitor thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:45,427 | INFO     | [job] validate thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:45,458 | INFO     | [data] control thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:45,489 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:45,622 | INFO     | all payload control threads have been joined
[2026-01-09 19:32:34] 2026-01-10 00:31:45,874 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:45,954 | INFO     | [payload] validate_post thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:46,120 | INFO     | [job] control thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:46,304 | INFO     | [data] copytool_out thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:46,328 | INFO     | [job] queue monitor thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:46,394 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:46,528 | INFO     | [data] copytool_in thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:46,629 | INFO     | [payload] control thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:46,668 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:46,761 | INFO     | [payload] failed_post thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:31:48,309 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 19:32:34] 2026-01-10 00:32:15,297 | INFO     | PID=3559339 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-09 19:32:34] 2026-01-10 00:32:15,297 | INFO     | .. there are 28 such processes running
[2026-01-09 19:32:34] 2026-01-10 00:32:15,297 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 19:32:34] 2026-01-10 00:32:15,297 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 19:32:34] 2026-01-10 00:32:15,307 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 19:32:34] 2026-01-10 00:32:27,676 | INFO     | [monitor] cgroup control has ended
[2026-01-09 19:32:34] 2026-01-10 00:32:27,780 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140098186323776)>', '<ExcThread(monitor, started 140097823414016)>']
[2026-01-09 19:32:34] 2026-01-10 00:32:28,387 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 19:32:34] 2026-01-10 00:32:28,387 | INFO     | [monitor] control thread has ended
[2026-01-09 19:32:34] 2026-01-10 00:32:32,806 | INFO     | all workflow threads have been joined
[2026-01-09 19:32:34] 2026-01-10 00:32:32,806 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 19:32:34] 2026-01-10 00:32:32,806 | INFO     | traces error code: 0
[2026-01-09 19:32:34] 2026-01-10 00:32:32,806 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 19:32:34] 2026-01-10 00:32:33,493 [wrapper] ==== pilot stdout END ====
[2026-01-09 19:32:34] 2026-01-10 00:32:33,534 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 19:32:34] 2026-01-10 00:32:33,550 [wrapper] pilotpid: 3559339
[2026-01-09 19:32:34] 2026-01-10 00:32:33,563 [wrapper] Pilot exit status: 0
[2026-01-09 19:32:34] 2026-01-10 00:32:33,674 [wrapper] pandaids: 6963194367
[2026-01-09 19:32:34] 2026-01-10 00:32:34,015 [wrapper] cleanup supervisor_pilot  189614 3559340
[2026-01-09 19:32:34] 2026-01-10 00:32:34,042 [wrapper] Test setup, not cleaning
[2026-01-09 19:32:34] 2026-01-10 00:32:34,066 [wrapper] apfmon messages muted
[2026-01-09 19:32:34] 2026-01-10 00:32:34,094 [wrapper] ==== wrapper stdout END ====
[2026-01-09 19:32:34] 2026-01-10 00:32:34,126 [wrapper] ==== wrapper stderr END ====
[2026-01-09 19:32:34]  *** Error codes and diagnostics ***
[2026-01-09 19:32:34]     "exeErrorCode": 0,
[2026-01-09 19:32:34]     "exeErrorDiag": "",
[2026-01-09 19:32:34]     "pilotErrorCode": 0,
[2026-01-09 19:32:34]     "pilotErrorDiag": "",
[2026-01-09 19:32:34]  *** Listing of results directory ***
[2026-01-09 19:32:34] total 438260
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 19:32:34] -rwx------. 1 boincer umatlas     36322 Jan  8 23:26 runpilot2-wrapper.sh
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:32 queuedata.json
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas       100 Jan  9 16:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 19:32:34] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 16:25 run_atlas
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas       105 Jan  9 16:25 job.xml
[2026-01-09 19:32:34] -rw-r--r--. 2 boincer umatlas 223792737 Jan  9 16:25 EVNT.47898824._001516.pool.root.1
[2026-01-09 19:32:34] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:25 start_atlas.sh
[2026-01-09 19:32:34] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 16:25 shared
[2026-01-09 19:32:34] -rw-r--r--. 2 boincer umatlas    592407 Jan  9 16:25 input.tar.gz
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas         0 Jan  9 16:25 boinc_lockfile
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 16:25 pandaJob.out
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas        57 Jan  9 16:25 setup.sh.local
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas    989398 Jan  9 16:26 agis_schedconf.cvmfs.json
[2026-01-09 19:32:34] drwx------. 5 boincer umatlas      4096 Jan  9 16:27 pilot3
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas      7174 Jan  9 19:28 init_data.xml
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas 217461448 Jan  9 19:29 HITS.47898826._039430.pool.root.1
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas       531 Jan  9 19:29 boinc_task_state.xml
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas      1045 Jan  9 19:30 memory_monitor_summary.json
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas   1516240 Jan  9 19:30 agis_ddmendpoints.agis.ALL.json
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas    400262 Jan  9 19:31 log.47898826._039430.job.log.tgz.1
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas      7806 Jan  9 19:31 heartbeat.json
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas        95 Jan  9 19:32 pilot_heartbeat.json
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 19:32 boinc_mmap_file
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas        28 Jan  9 19:32 wrapper_checkpoint.txt
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas      5011 Jan  9 19:32 pilotlog.txt
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas   1406185 Jan  9 19:32 log.47898826._039430.job.log.1
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas       357 Jan  9 19:32 output.list
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas       620 Jan  9 19:32 runtime_log
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas   1822720 Jan  9 19:32 result.tar.gz
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas      9338 Jan  9 19:32 runtime_log.err
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas       658 Jan  9 19:32 lHkMDmxFJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmBEhKDmPwJiRn.diag
[2026-01-09 19:32:34] -rw-r--r--. 1 boincer umatlas     21408 Jan  9 19:32 stderr.txt
[2026-01-09 19:32:34] HITS file was successfully produced:
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas 217461448 Jan  9 19:29 shared/HITS.pool.root.1
[2026-01-09 19:32:34]  *** Contents of shared directory: ***
[2026-01-09 19:32:34] total 433296
[2026-01-09 19:32:34] -rw-r--r--. 2 boincer umatlas 223792737 Jan  9 16:25 ATLAS.root_0
[2026-01-09 19:32:34] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 16:25 start_atlas.sh
[2026-01-09 19:32:34] -rw-r--r--. 2 boincer umatlas    592407 Jan  9 16:25 input.tar.gz
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas 217461448 Jan  9 19:29 HITS.pool.root.1
[2026-01-09 19:32:34] -rw-------. 1 boincer umatlas   1822720 Jan  9 19:32 result.tar.gz
19:32:35 (3549531): run_atlas exited; CPU time 30852.658462
19:32:35 (3549531): called boinc_finish(0)

</stderr_txt>
]]>

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