Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:40:54 (11354): wrapper (7.7.26015): starting
23:40:54 (11354): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 23:40:54] Arguments: --nthreads 8
[2026-01-09 23:40:54] Threads: 8
[2026-01-09 23:40:54] Checking for CVMFS
[2026-01-09 23:40:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 23:40:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 23:40:55] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 23:40:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 23:40:55] 2.11.0.0 11065 129641 79056 154959 1 1 3130335 4096000 1 130560 3 6500805 99.466 7312318 485 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-09 23:40:55] CVMFS is ok
[2026-01-09 23:40:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 23:40:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 23:40:55] Further information can be found at the LHC@home message board.
[2026-01-09 23:40:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 23:40:55] Checking for apptainer binary...
[2026-01-09 23:40:55] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-09 23:40:55] apptainer is not installed, using version from CVMFS
[2026-01-09 23:40:55] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 23:41:11] WARNING: Environment variable TMPDIR already has value [/tmp/job_11009422/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node384
[2026-01-09 23:41:11] apptainer works
[2026-01-09 23:41:11] Set ATHENA_PROC_NUMBER=8
[2026-01-09 23:41:11] Set ATHENA_CORE_NUMBER=8
[2026-01-09 23:41:11] Starting ATLAS job with PandaID=6963188139
[2026-01-09 23:41:11] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11009422/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 00:57:20]  *** The last 200 lines of the pilot log: ***
[2026-01-10 00:57:20]  status=None
[2026-01-10 00:57:20]  status_code=0
[2026-01-10 00:57:20]  storage_token=
[2026-01-10 00:57:20]  surl=/tmp/job_11009422/atlas/pilot/slots/0/PanDA_Pilot-6963188139/log.47898826._037292.job.log.tgz.1
[2026-01-10 00:57:20]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/0f/log.47898826._037292.job.log.tgz.1
[2026-01-10 00:57:20]  workdir=None
[2026-01-10 00:57:20] ]
[2026-01-10 00:57:20] 2026-01-09 23:56:25,501 | INFO     | transferring file log.47898826._037292.job.log.tgz.1 from /tmp/job_11009422/atlas/pilot/slots/0/PanDA_Pilot-6963188139/log.47898826._037292.job.log.tgz.1 to /tmp/j
[2026-01-10 00:57:20] 2026-01-09 23:56:25,502 | INFO     | executing command: /usr/bin/env mv /tmp/job_11009422/atlas/pilot/slots/0/PanDA_Pilot-6963188139/log.47898826._037292.job.log.tgz.1 /tmp/job_11009422/atlas/pilot/sl
[2026-01-10 00:57:20] 2026-01-09 23:56:25,509 | INFO     | adding to output.list: log.47898826._037292.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/3d/0f/log.47898826._037292.job.log.tg
[2026-01-10 00:57:20] 2026-01-09 23:56:25,510 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 00:57:20] 2026-01-09 23:56:25,510 | INFO     | summary of transferred files:
[2026-01-10 00:57:20] 2026-01-09 23:56:25,510 | INFO     |  -- lfn=log.47898826._037292.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 00:57:20] 2026-01-09 23:56:25,510 | INFO     | stage-out finished correctly
[2026-01-10 00:57:20] 2026-01-09 23:56:25,610 | INFO     | time since job start (4459s) is within the limit (349056.0s)
[2026-01-10 00:57:20] 2026-01-09 23:56:25,982 | WARNING  | process 32664 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 00:57:20] 2026-01-09 23:56:25,982 | INFO     | using path: /tmp/job_11009422/atlas/pilot/slots/0/PanDA_Pilot-6963188139/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 00:57:20] 2026-01-09 23:56:26,066 | INFO     | number of running child processes to parent process 32664: 1
[2026-01-10 00:57:20] 2026-01-09 23:56:26,067 | INFO     | maximum number of monitored processes: 7
[2026-01-10 00:57:20] 2026-01-09 23:56:26,728 | INFO     | PID=18869 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 00:57:20] 2026-01-09 23:56:26,728 | INFO     | .. there are 2 such processes running
[2026-01-10 00:57:20] 2026-01-09 23:56:27,729 | INFO     | time since job start (4461s) is within the limit (349056.0s)
[2026-01-10 00:57:20] 2026-01-09 23:56:28,569 | INFO     | monitor loop #344: job 0:6963188139 is in state 'finished'
[2026-01-10 00:57:20] 2026-01-09 23:56:28,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 00:57:20] 2026-01-09 23:56:28,572 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 00:57:20] 2026-01-09 23:56:29,646 | INFO     | job 6963188139 has state=finished
[2026-01-10 00:57:20] 2026-01-09 23:56:29,646 | INFO     | preparing for final server update for job 6963188139 in state='finished'
[2026-01-10 00:57:20] 2026-01-09 23:56:29,647 | INFO     | this job has now completed (state=finished)
[2026-01-10 00:57:20] 2026-01-09 23:56:29,647 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 00:57:20] 2026-01-09 23:56:29,647 | INFO     | log transfer has been attempted: DONE
[2026-01-10 00:57:20] 2026-01-09 23:56:29,647 | INFO     | job 6963188139 has finished - writing final server update
[2026-01-10 00:57:20] 2026-01-09 23:56:29,647 | INFO     | total number of processed events: 400 (read)
[2026-01-10 00:57:20] 2026-01-09 23:56:29,647 | INFO     | executing command: lscpu
[2026-01-10 00:57:20] 2026-01-09 23:56:29,679 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 00:57:20] 2026-01-09 23:56:29,734 | INFO     | time since job start (4463s) is within the limit (349056.0s)
[2026-01-10 00:57:20] 2026-01-09 23:56:31,072 | INFO     | monitor loop #345: job 0:6963188139 is in state 'finished'
[2026-01-10 00:57:20] 2026-01-09 23:56:31,072 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 00:57:20] 2026-01-09 23:56:31,147 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 00:57:20] 2026-01-09 23:56:31,152 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2505.8800625000003
[2026-01-10 00:57:20] 2026-01-09 23:56:31,157 | INFO     | using path: /tmp/job_11009422/atlas/pilot/slots/0/PanDA_Pilot-6963188139/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 00:57:20] 2026-01-09 23:56:31,157 | INFO     | extracted standard info from prmon json
[2026-01-10 00:57:20] 2026-01-09 23:56:31,157 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 00:57:20] 2026-01-09 23:56:31,157 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 00:57:20] 2026-01-09 23:56:31,157 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 00:57:20] 2026-01-09 23:56:31,157 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 00:57:20] 2026-01-09 23:56:31,158 | INFO     | fitting pss+swap vs Time
[2026-01-10 00:57:20] 2026-01-09 23:56:31,158 | INFO     | sum of square deviations: 85338144.98461537
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | sum of deviations: 6071601731.876922
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | mean x: 1768000850.7846153
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | mean y: 2506010.2769230767
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | intersect: -125786460102.34431
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | chi2: 0.8013262338624921
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | current memory leak: 71.15 B/s (using 65 data points, chi2=0.80)
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | could have reported an average CPU frequency of 2490 MHz (6 samples)
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | ..............................
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | . Timing measurements:
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | . get job = 0 s
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | . initial setup = 6 s
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | . payload setup = 48 s
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | . stage-in = 0 s
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | . payload execution = 4393 s
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | . stage-out = 0 s
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | . log creation = 0 s
[2026-01-10 00:57:20] 2026-01-09 23:56:31,159 | INFO     | ..............................
[2026-01-10 00:57:20] 2026-01-09 23:56:31,207 | INFO     | 
[2026-01-10 00:57:20] 2026-01-09 23:56:31,207 | INFO     | job summary report
[2026-01-10 00:57:20] 2026-01-09 23:56:31,207 | INFO     | --------------------------------------------------
[2026-01-10 00:57:20] 2026-01-09 23:56:31,207 | INFO     | PanDA job id: 6963188139
[2026-01-10 00:57:20] 2026-01-09 23:56:31,207 | INFO     | task id: 47898826
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | errors: (none)
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | pilot state: finished 
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | transexitcode: 0
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | exeerrorcode: 0
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | exeerrordiag: 
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | exitcode: 0
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | exitmsg: OK
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | cpuconsumptiontime: 27912 s
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | nevents: 400
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | neventsw: 0
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | pid: 32664
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | pgrp: 32664
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | corecount: 8
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | event service: False
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | sizes: {0: 2284097, 2: 2284359, 11: 2284387, 4444: 2310483, 4446: 2319511, 4449: 2319567, 4451: 2319889}
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | --------------------------------------------------
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | 
[2026-01-10 00:57:20] 2026-01-09 23:56:31,208 | INFO     | executing command: ls -lF /tmp/job_11009422/atlas/pilot/slots/0
[2026-01-10 00:57:20] 2026-01-09 23:56:31,216 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | job 6963188139 has completed (purged errors)
[2026-01-10 00:57:20] 2026-01-09 23:56:31,217 | INFO     | overall cleanup function is called
[2026-01-10 00:57:20] 2026-01-09 23:56:32,223 | INFO     | --- collectZombieJob: --- 10, [32664]
[2026-01-10 00:57:20] 2026-01-09 23:56:32,223 | INFO     | zombie collector waiting for pid 32664
[2026-01-10 00:57:20] 2026-01-09 23:56:32,223 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 00:57:20] 2026-01-09 23:56:32,223 | INFO     | collected zombie processes
[2026-01-10 00:57:20] 2026-01-09 23:56:32,224 | INFO     | will attempt to kill all subprocesses of pid=32664
[2026-01-10 00:57:20] 2026-01-09 23:56:32,314 | INFO     | process IDs to be killed: [32664] (in reverse order)
[2026-01-10 00:57:20] 2026-01-09 23:56:32,344 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 00:57:20] 2026-01-09 23:56:32,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 00:57:20] 2026-01-09 23:56:32,347 | INFO     | did not find any defunct processes belonging to 32664
[2026-01-10 00:57:20] 2026-01-09 23:56:32,350 | INFO     | did not find any defunct processes belonging to 32664
[2026-01-10 00:57:20] 2026-01-09 23:56:32,350 | INFO     | ready for new job
[2026-01-10 00:57:20] 2026-01-09 23:56:32,350 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 00:57:20] 2026-01-09 23:56:32,350 | INFO     | ***************************************
[2026-01-10 00:57:20] 2026-01-09 23:56:32,350 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 00:57:20] 2026-01-09 23:56:32,351 | INFO     | ***************************************
[2026-01-10 00:57:20] 2026-01-09 23:56:32,351 | INFO     | 
[2026-01-10 00:57:20] 2026-01-09 23:56:32,364 | INFO     | architecture information:
[2026-01-10 00:57:20] 2026-01-09 23:56:32,365 | INFO     | executing command: cat /etc/os-release
[2026-01-10 00:57:20] 2026-01-09 23:56:32,371 | INFO     | cat /etc/os-release:
[2026-01-10 00:57:20] NAME="CentOS Linux"
[2026-01-10 00:57:20] VERSION="7 (Core)"
[2026-01-10 00:57:20] ID="centos"
[2026-01-10 00:57:20] ID_LIKE="rhel fedora"
[2026-01-10 00:57:20] VERSION_ID="7"
[2026-01-10 00:57:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 00:57:20] ANSI_COLOR="0;31"
[2026-01-10 00:57:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 00:57:20] HOME_URL="https://www.centos.org/"
[2026-01-10 00:57:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 00:57:20] 
[2026-01-10 00:57:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 00:57:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 00:57:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 00:57:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 00:57:20] 
[2026-01-10 00:57:20] 2026-01-09 23:56:32,371 | INFO     | ***************************************
[2026-01-10 00:57:20] 2026-01-09 23:56:32,873 | INFO     | executing command: df -mP /tmp/job_11009422/atlas/pilot/slots/0
[2026-01-10 00:57:20] 2026-01-09 23:56:32,879 | INFO     | sufficient remaining disk space (226595176448 B)
[2026-01-10 00:57:20] 2026-01-09 23:56:32,879 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 00:57:20] 2026-01-09 23:56:32,879 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 00:57:20] 2026-01-09 23:56:32,879 | INFO     | update_server=False
[2026-01-10 00:57:20] 2026-01-09 23:56:32,879 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 00:57:20] 2026-01-09 23:56:32,879 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:57:20] 2026-01-09 23:56:32,879 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:57:20] 2026-01-09 23:56:32,879 | INFO     | aborting loop
[2026-01-10 00:57:20] 2026-01-09 23:56:33,344 | INFO     | all payload control threads have been joined
[2026-01-10 00:57:20] 2026-01-09 23:56:33,538 | INFO     | all data control threads have been joined
[2026-01-10 00:57:20] 2026-01-09 23:56:33,567 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 00:57:20] 2026-01-09 23:56:33,884 | INFO     | [job] retrieve thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:33,884 | INFO     | [job] queue monitor thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:33,884 | INFO     | [job] job monitor thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:33,940 | INFO     | [payload] failed_post thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:34,210 | INFO     | [data] copytool_in thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:34,210 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:34,349 | INFO     | [payload] control thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:34,403 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:34,530 | INFO     | all job control threads have been joined
[2026-01-10 00:57:20] 2026-01-09 23:56:34,539 | INFO     | [data] control thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:34,625 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 00:57:20] 2026-01-09 23:56:34,919 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:35,051 | INFO     | [payload] validate_post thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:35,208 | INFO     | [job] validate thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:35,208 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:35,535 | INFO     | [job] control thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:35,572 | INFO     | [data] copytool_out thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:38,630 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 00:57:20] 2026-01-09 23:56:54,106 [wrapper] supervise_pilot (15 min periods counter: 6)
[2026-01-10 00:57:20] 2026-01-09 23:57:02,915 | INFO     | PID=18869 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 00:57:20] 2026-01-09 23:57:02,916 | INFO     | .. there are 2 such processes running
[2026-01-10 00:57:20] 2026-01-09 23:57:02,916 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 00:57:20] 2026-01-09 23:57:02,916 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 00:57:20] 2026-01-09 23:57:02,916 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 00:57:20] 2026-01-09 23:57:14,012 | INFO     | [monitor] cgroup control has ended
[2026-01-10 00:57:20] 2026-01-09 23:57:15,210 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456062920448)>']
[2026-01-10 00:57:20] 2026-01-09 23:57:15,981 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 00:57:20] 2026-01-09 23:57:15,981 | INFO     | [monitor] control thread has ended
[2026-01-10 00:57:20] 2026-01-09 23:57:20,235 | INFO     | all workflow threads have been joined
[2026-01-10 00:57:20] 2026-01-09 23:57:20,235 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 00:57:20] 2026-01-09 23:57:20,235 | INFO     | traces error code: 0
[2026-01-10 00:57:20] 2026-01-09 23:57:20,235 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 00:57:20] 2026-01-09 23:57:20,301 [wrapper] ==== pilot stdout END ====
[2026-01-10 00:57:20] 2026-01-09 23:57:20,302 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 00:57:20] 2026-01-09 23:57:20,303 [wrapper] pilotpid: 18869
[2026-01-10 00:57:20] 2026-01-09 23:57:20,304 [wrapper] Pilot exit status: 0
[2026-01-10 00:57:20] 2026-01-09 23:57:20,370 [wrapper] pandaids: 6963188139
[2026-01-10 00:57:20] 2026-01-09 23:57:20,390 [wrapper] cleanup supervisor_pilot  8372 18870
[2026-01-10 00:57:20] 2026-01-09 23:57:20,391 [wrapper] Test setup, not cleaning
[2026-01-10 00:57:20] 2026-01-09 23:57:20,392 [wrapper] apfmon messages muted
[2026-01-10 00:57:20] 2026-01-09 23:57:20,393 [wrapper] ==== wrapper stdout END ====
[2026-01-10 00:57:20] 2026-01-09 23:57:20,394 [wrapper] ==== wrapper stderr END ====
[2026-01-10 00:57:20]  *** Error codes and diagnostics ***
[2026-01-10 00:57:20]     "exeErrorCode": 0,
[2026-01-10 00:57:20]     "exeErrorDiag": "",
[2026-01-10 00:57:20]     "pilotErrorCode": 0,
[2026-01-10 00:57:20]     "pilotErrorDiag": "",
[2026-01-10 00:57:20]  *** Listing of results directory ***
[2026-01-10 00:57:20] total 438188
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 00:57:20] -rwx------ 1 mf493845 unix-user     36322 Jan  9 05:25 runpilot2-wrapper.sh
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user      5112 Jan  9 05:29 queuedata.json
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user       100 Jan  9 22:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 00:57:20] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan  9 22:43 run_atlas
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user       105 Jan  9 22:43 job.xml
[2026-01-10 00:57:20] -rw-r--r-- 2 mf493845 unix-user 224067538 Jan  9 23:40 EVNT.47898824._001430.pool.root.1
[2026-01-10 00:57:20] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  9 23:40 start_atlas.sh
[2026-01-10 00:57:20] drwxrwx--x 2 mf493845 unix-user       100 Jan  9 23:40 shared
[2026-01-10 00:57:20] -rw-r--r-- 2 mf493845 unix-user    592401 Jan  9 23:40 input.tar.gz
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user      6391 Jan  9 23:40 init_data.xml
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user         0 Jan  9 23:40 boinc_setup_complete
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user      8192 Jan  9 23:40 boinc_mmap_file
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user         0 Jan  9 23:40 boinc_lockfile
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user      2520 Jan  9 23:41 pandaJob.out
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user    989375 Jan  9 23:42 agis_schedconf.cvmfs.json
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user   1516240 Jan  9 23:42 agis_ddmendpoints.agis.ALL.json
[2026-01-10 00:57:20] drwx------ 5 mf493845 unix-user       440 Jan  9 23:42 pilot3
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user 218755577 Jan 10 00:55 HITS.47898826._037292.pool.root.1
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user        95 Jan 10 00:56 pilot_heartbeat.json
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user      1033 Jan 10 00:56 memory_monitor_summary.json
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user    330607 Jan 10 00:56 log.47898826._037292.job.log.tgz.1
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user      7787 Jan 10 00:56 heartbeat.json
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user      4835 Jan 10 00:57 pilotlog.txt
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user    668798 Jan 10 00:57 log.47898826._037292.job.log.1
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user       357 Jan 10 00:57 output.list
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user       620 Jan 10 00:57 runtime_log
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user   1013760 Jan 10 00:57 result.tar.gz
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user      9220 Jan 10 00:57 runtime_log.err
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user       646 Jan 10 00:57 d4HNDmvEJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmH6gKDmHn6iin.diag
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user     22646 Jan 10 00:57 stderr.txt
[2026-01-10 00:57:20] HITS file was successfully produced:
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user 218755577 Jan 10 00:55 shared/HITS.pool.root.1
[2026-01-10 00:57:20]  *** Contents of shared directory: ***
[2026-01-10 00:57:20] total 434036
[2026-01-10 00:57:20] -rw-r--r-- 2 mf493845 unix-user 224067538 Jan  9 23:40 ATLAS.root_0
[2026-01-10 00:57:20] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  9 23:40 start_atlas.sh
[2026-01-10 00:57:20] -rw-r--r-- 2 mf493845 unix-user    592401 Jan  9 23:40 input.tar.gz
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user 218755577 Jan 10 00:55 HITS.pool.root.1
[2026-01-10 00:57:20] -rw------- 1 mf493845 unix-user   1013760 Jan 10 00:57 result.tar.gz
00:57:21 (11354): run_atlas exited; CPU time 27748.223685
00:57:21 (11354): called boinc_finish(0)

</stderr_txt>
]]>

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