Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:33:35 (3827326): wrapper (7.7.26015): starting
14:33:35 (3827326): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 14:33:35] Arguments: --nthreads 3
[2026-01-10 14:33:35] Threads: 3
[2026-01-10 14:33:35] Checking for CVMFS
[2026-01-10 14:33:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 14:33:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 14:33:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 14:33:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 14:33:35] 2.9.2.0 2917002 3880 84076 154981 0 56 35972669 36864001 0 130560 0 2400366 99.988 140020 3331 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 14:33:35] CVMFS is ok
[2026-01-10 14:33:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 14:33:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 14:33:35] Further information can be found at the LHC@home message board.
[2026-01-10 14:33:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 14:33:35] Checking for apptainer binary...
[2026-01-10 14:33:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 14:33:35] Running /usr/bin/apptainer --version
[2026-01-10 14:33:35] apptainer version 1.4.1-1.1
[2026-01-10 14:33:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 14:33:36] thA331b
[2026-01-10 14:33:36] apptainer works
[2026-01-10 14:33:36] Set ATHENA_PROC_NUMBER=3
[2026-01-10 14:33:36] Set ATHENA_CORE_NUMBER=3
[2026-01-10 14:33:36] Starting ATLAS job with PandaID=6963792067
[2026-01-10 14:33:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 16:24:57]  *** The last 200 lines of the pilot log: ***
[2026-01-10 16:24:57] 2026-01-10 15:24:10,201 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 16:24:57] 2026-01-10 15:24:10,201 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:24:57] 2026-01-10 15:24:10,395 | INFO     | all payload control threads have been joined
[2026-01-10 16:24:57] 2026-01-10 15:24:10,581 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 16:24:57] 2026-01-10 15:24:10,595 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 16:24:57] 2026-01-10 15:24:10,595 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 16:24:57] 2026-01-10 15:24:10,595 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:24:57] 2026-01-10 15:24:10,595 | INFO     | will abort loop
[2026-01-10 16:24:57] 2026-01-10 15:24:10,598 | INFO     | all data control threads have been joined
[2026-01-10 16:24:57] 2026-01-10 15:24:11,206 | INFO     | [job] retrieve thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:11,206 | INFO     | [job] queue monitor thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:11,401 | INFO     | [payload] control thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:11,455 | INFO     | [payload] validate_post thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:11,601 | INFO     | [job] job monitor thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:11,604 | INFO     | [data] control thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:11,604 | INFO     | [data] copytool_in thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:11,818 | INFO     | all job control threads have been joined
[2026-01-10 16:24:57] 2026-01-10 15:24:11,849 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:12,114 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:12,139 | INFO     | [job] validate thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:12,274 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:12,546 | INFO     | [payload] failed_post thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:12,586 | INFO     | [data] copytool_out thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:12,823 | INFO     | [job] control thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:13,460 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 16:24:57] 2026-01-10 15:24:17,467 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:20,828 | INFO     | job.realtimelogging is not enabled
[2026-01-10 16:24:57] 2026-01-10 15:24:21,834 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 16:24:57] 2026-01-10 15:24:51,805 | INFO     | [monitor] cgroup control has ended
[2026-01-10 16:24:57] 2026-01-10 15:24:51,891 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139635769780032)>', '<ExcThread(monitor, started 139635149760256)>']
[2026-01-10 16:24:57] 2026-01-10 15:24:52,420 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 16:24:57] 2026-01-10 15:24:52,420 | INFO     | [monitor] control thread has ended
[2026-01-10 16:24:57] 2026-01-10 15:24:56,917 | INFO     | all workflow threads have been joined
[2026-01-10 16:24:57] 2026-01-10 15:24:56,918 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 16:24:57] 2026-01-10 15:24:56,918 | INFO     | traces error code: 0
[2026-01-10 16:24:57] 2026-01-10 15:24:56,919 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 16:24:57] 2026-01-10 15:24:56,969 [wrapper] ==== pilot stdout END ====
[2026-01-10 16:24:57] 2026-01-10 15:24:56,971 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 16:24:57] 2026-01-10 15:24:56,974 [wrapper] pilotpid: 3831054
[2026-01-10 16:24:57] 2026-01-10 15:24:56,976 [wrapper] Pilot exit status: 0
[2026-01-10 16:24:57] 2026-01-10 15:24:56,983 [wrapper] pandaids: 6963792067
[2026-01-10 16:24:57] 2026-01-10 15:24:57,000 [wrapper] cleanup supervisor_pilot 3851850 3831055
[2026-01-10 16:24:57] 2026-01-10 15:24:57,002 [wrapper] Test setup, not cleaning
[2026-01-10 16:24:57] 2026-01-10 15:24:57,004 [wrapper] apfmon messages muted
[2026-01-10 16:24:57] 2026-01-10 15:24:57,006 [wrapper] ==== wrapper stdout END ====
[2026-01-10 16:24:57] 2026-01-10 15:24:57,009 [wrapper] ==== wrapper stderr END ====
[2026-01-10 16:24:57]  *** Error codes and diagnostics ***
[2026-01-10 16:24:57]     "exeErrorCode": 0,
[2026-01-10 16:24:57]     "exeErrorDiag": "",
[2026-01-10 16:24:57]     "pilotErrorCode": 0,
[2026-01-10 16:24:57]     "pilotErrorDiag": "",
[2026-01-10 16:24:57]  *** Listing of results directory ***
[2026-01-10 16:24:57] total 446060
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc    597923 Jan  7 14:01 pilot3.tar.gz
[2026-01-10 16:24:57] -rwx------ 1 boinc boinc     36322 Jan  9 05:26 runpilot2-wrapper.sh
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:30 queuedata.json
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc       100 Jan 10 14:33 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 16:24:57] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 14:33 run_atlas
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc       105 Jan 10 14:33 job.xml
[2026-01-10 16:24:57] -rw-r--r-- 2 boinc boinc 227021340 Jan 10 14:33 EVNT.47898824._000433.pool.root.1
[2026-01-10 16:24:57] -rw-r--r-- 2 boinc boinc    610546 Jan 10 14:33 input.tar.gz
[2026-01-10 16:24:57] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:33 start_atlas.sh
[2026-01-10 16:24:57] drwxrwx--x 2 boinc boinc      4096 Jan 10 14:33 shared
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:33 boinc_setup_complete
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc      6441 Jan 10 14:33 init_data.xml
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:33 boinc_lockfile
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc      2519 Jan 10 14:33 pandaJob.out
[2026-01-10 16:24:57] -rw------- 1 boinc boinc    989556 Jan 10 14:33 agis_schedconf.cvmfs.json
[2026-01-10 16:24:57] -rw------- 1 boinc boinc   1516240 Jan 10 14:33 agis_ddmendpoints.agis.ALL.json
[2026-01-10 16:24:57] drwx------ 7 boinc boinc      4096 Jan 10 14:33 pilot3
[2026-01-10 16:24:57] -rw------- 1 boinc boinc        95 Jan 10 16:23 pilot_heartbeat.json
[2026-01-10 16:24:57] -rw------- 1 boinc boinc 223324555 Jan 10 16:23 HITS.47898826._039795.pool.root.1
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc       529 Jan 10 16:23 boinc_task_state.xml
[2026-01-10 16:24:57] -rw------- 1 boinc boinc      1019 Jan 10 16:23 memory_monitor_summary.json
[2026-01-10 16:24:57] -rw------- 1 boinc boinc    280119 Jan 10 16:24 log.47898826._039795.job.log.tgz.1
[2026-01-10 16:24:57] -rw------- 1 boinc boinc      7768 Jan 10 16:24 heartbeat.json
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc      8192 Jan 10 16:24 boinc_mmap_file
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc        27 Jan 10 16:24 wrapper_checkpoint.txt
[2026-01-10 16:24:57] -rw------- 1 boinc boinc      4814 Jan 10 16:24 pilotlog.txt
[2026-01-10 16:24:57] -rw------- 1 boinc boinc    961440 Jan 10 16:24 log.47898826._039795.job.log.1
[2026-01-10 16:24:57] -rw------- 1 boinc boinc       357 Jan 10 16:24 output.list
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc       620 Jan 10 16:24 runtime_log
[2026-01-10 16:24:57] -rw------- 1 boinc boinc   1259520 Jan 10 16:24 result.tar.gz
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc      8902 Jan 10 16:24 runtime_log.err
[2026-01-10 16:24:57] -rw------- 1 boinc boinc       660 Jan 10 16:24 bgeNDmlFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjPmKDma19ZMn.diag
[2026-01-10 16:24:57] -rw-r--r-- 1 boinc boinc      7079 Jan 10 16:24 stderr.txt
[2026-01-10 16:24:57] HITS file was successfully produced:
[2026-01-10 16:24:57] -rw------- 1 boinc boinc 223324555 Jan 10 16:23 shared/HITS.pool.root.1
[2026-01-10 16:24:57]  *** Contents of shared directory: ***
[2026-01-10 16:24:57] total 441652
[2026-01-10 16:24:57] -rw-r--r-- 2 boinc boinc 227021340 Jan 10 14:33 ATLAS.root_0
[2026-01-10 16:24:57] -rw-r--r-- 2 boinc boinc    610546 Jan 10 14:33 input.tar.gz
[2026-01-10 16:24:57] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:33 start_atlas.sh
[2026-01-10 16:24:57] -rw------- 1 boinc boinc 223324555 Jan 10 16:23 HITS.pool.root.1
[2026-01-10 16:24:57] -rw------- 1 boinc boinc   1259520 Jan 10 16:24 result.tar.gz
16:24:58 (3827326): run_atlas exited; CPU time 19222.277268
16:24:58 (3827326): called boinc_finish(0)

</stderr_txt>
]]>

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