Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
06:45:33 (2356077): wrapper (7.7.26015): starting
06:45:33 (2356077): wrapper: running run_atlas (--nthreads 12)
[2026-01-10 06:45:33] Arguments: --nthreads 12
[2026-01-10 06:45:33] Threads: 12
[2026-01-10 06:45:33] Checking for CVMFS
[2026-01-10 06:45:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 06:45:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 06:45:33] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 06:45:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 06:45:33] 2.13.3.0 2429250 22267 294860 154969 3 188 30739823 46080001 6462 130560 0 113134122 99.882 38768522 23211 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-01-10 06:45:33] CVMFS is ok
[2026-01-10 06:45:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 06:45:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 06:45:33] Further information can be found at the LHC@home message board.
[2026-01-10 06:45:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 06:45:33] Checking for apptainer binary...
[2026-01-10 06:45:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 06:45:33] Running /usr/bin/apptainer --version
[2026-01-10 06:45:33] apptainer version 1.4.5-2.el9
[2026-01-10 06:45:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 06:45:33] mff2103.farm.particle.cz
[2026-01-10 06:45:33] apptainer works
[2026-01-10 06:45:33] Set ATHENA_PROC_NUMBER=12
[2026-01-10 06:45:33] Set ATHENA_CORE_NUMBER=12
[2026-01-10 06:45:33] Starting ATLAS job with PandaID=6963194331
[2026-01-10 06:45:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/scratch/.boinc/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 08:04:16]  *** The last 200 lines of the pilot log: ***
[2026-01-10 08:04:16]  status=None
[2026-01-10 08:04:16]  status_code=0
[2026-01-10 08:04:16]  storage_token=
[2026-01-10 08:04:16]  surl=/scratch/.boinc/slots/4/PanDA_Pilot-6963194331/log.47898826._039394.job.log.tgz.1
[2026-01-10 08:04:16]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/87/log.47898826._039394.job.log.tgz.1
[2026-01-10 08:04:16]  workdir=None
[2026-01-10 08:04:16] ]
[2026-01-10 08:04:16] 2026-01-10 07:03:33,679 | INFO     | transferring file log.47898826._039394.job.log.tgz.1 from /scratch/.boinc/slots/4/PanDA_Pilot-6963194331/log.47898826._039394.job.log.tgz.1 to /scratch/.boinc/slot
[2026-01-10 08:04:16] 2026-01-10 07:03:33,679 | INFO     | executing command: /usr/bin/env mv /scratch/.boinc/slots/4/PanDA_Pilot-6963194331/log.47898826._039394.job.log.tgz.1 /scratch/.boinc/slots/4/log.47898826._039394.j
[2026-01-10 08:04:16] 2026-01-10 07:03:33,701 | INFO     | adding to output.list: log.47898826._039394.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/af/87/log.47898826._039394.job.log.tg
[2026-01-10 08:04:16] 2026-01-10 07:03:33,701 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 08:04:16] 2026-01-10 07:03:33,702 | INFO     | summary of transferred files:
[2026-01-10 08:04:16] 2026-01-10 07:03:33,702 | INFO     |  -- lfn=log.47898826._039394.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 08:04:16] 2026-01-10 07:03:33,702 | INFO     | stage-out finished correctly
[2026-01-10 08:04:16] 2026-01-10 07:03:34,186 | INFO     | time since job start (4669s) is within the limit (349056.0s)
[2026-01-10 08:04:16] 2026-01-10 07:03:34,231 | INFO     | monitor loop #336: job 0:6963194331 is in state 'finished'
[2026-01-10 08:04:16] 2026-01-10 07:03:34,232 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 08:04:16] 2026-01-10 07:03:35,603 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 08:04:16] 2026-01-10 07:03:36,192 | INFO     | time since job start (4671s) is within the limit (349056.0s)
[2026-01-10 08:04:16] 2026-01-10 07:03:36,735 | INFO     | monitor loop #337: job 0:6963194331 is in state 'finished'
[2026-01-10 08:04:16] 2026-01-10 07:03:36,735 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 08:04:16] 2026-01-10 07:03:37,020 | INFO     | job 6963194331 has state=finished
[2026-01-10 08:04:16] 2026-01-10 07:03:37,021 | INFO     | preparing for final server update for job 6963194331 in state='finished'
[2026-01-10 08:04:16] 2026-01-10 07:03:37,021 | INFO     | this job has now completed (state=finished)
[2026-01-10 08:04:16] 2026-01-10 07:03:37,021 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 08:04:16] 2026-01-10 07:03:37,022 | INFO     | log transfer has been attempted: DONE
[2026-01-10 08:04:16] 2026-01-10 07:03:37,022 | INFO     | job 6963194331 has finished - writing final server update
[2026-01-10 08:04:16] 2026-01-10 07:03:37,022 | INFO     | total number of processed events: 400 (read)
[2026-01-10 08:04:16] 2026-01-10 07:03:37,023 | INFO     | executing command: lscpu
[2026-01-10 08:04:16] 2026-01-10 07:03:37,106 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 08:04:16] 2026-01-10 07:03:38,198 | INFO     | time since job start (4673s) is within the limit (349056.0s)
[2026-01-10 08:04:16] 2026-01-10 07:03:39,236 | INFO     | monitor loop #338: job 0:6963194331 is in state 'finished'
[2026-01-10 08:04:16] 2026-01-10 07:03:39,236 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 08:04:16] 2026-01-10 07:03:40,204 | INFO     | time since job start (4675s) is within the limit (349056.0s)
[2026-01-10 08:04:16] 2026-01-10 07:03:41,739 | INFO     | monitor loop #339: job 0:6963194331 is in state 'finished'
[2026-01-10 08:04:16] 2026-01-10 07:03:41,740 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 08:04:16] 2026-01-10 07:03:42,210 | INFO     | time since job start (4677s) is within the limit (349056.0s)
[2026-01-10 08:04:16] 2026-01-10 07:03:42,449 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 08:04:16] 2026-01-10 07:03:42,464 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2764.937354166668
[2026-01-10 08:04:16] 2026-01-10 07:03:42,481 | INFO     | using path: /scratch/.boinc/slots/4/PanDA_Pilot-6963194331/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 08:04:16] 2026-01-10 07:03:42,482 | INFO     | extracted standard info from prmon json
[2026-01-10 08:04:16] 2026-01-10 07:03:42,482 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 08:04:16] 2026-01-10 07:03:42,482 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 08:04:16] 2026-01-10 07:03:42,483 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 08:04:16] 2026-01-10 07:03:42,483 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 08:04:16] 2026-01-10 07:03:42,484 | INFO     | fitting pss+swap vs Time
[2026-01-10 08:04:16] 2026-01-10 07:03:42,485 | INFO     | sum of square deviations: 101843770.0
[2026-01-10 08:04:16] 2026-01-10 07:03:42,485 | INFO     | sum of deviations: -158679422.00000003
[2026-01-10 08:04:16] 2026-01-10 07:03:42,485 | INFO     | mean x: 1768026355.0
[2026-01-10 08:04:16] 2026-01-10 07:03:42,485 | INFO     | mean y: 2703122.7101449277
[2026-01-10 08:04:16] 2026-01-10 07:03:42,485 | INFO     | intersect: 2757406725.023442
[2026-01-10 08:04:16] 2026-01-10 07:03:42,485 | INFO     | chi2: 0.009635935235810956
[2026-01-10 08:04:16] 2026-01-10 07:03:42,486 | INFO     | current memory leak: -1.56 B/s (using 69 data points, chi2=0.01)
[2026-01-10 08:04:16] 2026-01-10 07:03:42,486 | INFO     | could have reported an average CPU frequency of 2761 MHz (6 samples)
[2026-01-10 08:04:16] 2026-01-10 07:03:42,486 | INFO     | ..............................
[2026-01-10 08:04:16] 2026-01-10 07:03:42,486 | INFO     | . Timing measurements:
[2026-01-10 08:04:16] 2026-01-10 07:03:42,486 | INFO     | . get job = 0 s
[2026-01-10 08:04:16] 2026-01-10 07:03:42,486 | INFO     | . initial setup = 1 s
[2026-01-10 08:04:16] 2026-01-10 07:03:42,486 | INFO     | . payload setup = 7 s
[2026-01-10 08:04:16] 2026-01-10 07:03:42,486 | INFO     | . stage-in = 0 s
[2026-01-10 08:04:16] 2026-01-10 07:03:42,486 | INFO     | . payload execution = 4638 s
[2026-01-10 08:04:16] 2026-01-10 07:03:42,487 | INFO     | . stage-out = 0 s
[2026-01-10 08:04:16] 2026-01-10 07:03:42,487 | INFO     | . log creation = 0 s
[2026-01-10 08:04:16] 2026-01-10 07:03:42,487 | INFO     | ..............................
[2026-01-10 08:04:16] 2026-01-10 07:03:42,575 | INFO     | 
[2026-01-10 08:04:16] 2026-01-10 07:03:42,575 | INFO     | job summary report
[2026-01-10 08:04:16] 2026-01-10 07:03:42,575 | INFO     | --------------------------------------------------
[2026-01-10 08:04:16] 2026-01-10 07:03:42,575 | INFO     | PanDA job id: 6963194331
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | task id: 47898826
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | errors: (none)
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | pilot state: finished 
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | transexitcode: 0
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | exeerrorcode: 0
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | exeerrordiag: 
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | exitcode: 0
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | exitmsg: OK
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | cpuconsumptiontime: 50497 s
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | nevents: 400
[2026-01-10 08:04:16] 2026-01-10 07:03:42,576 | INFO     | neventsw: 0
[2026-01-10 08:04:16] 2026-01-10 07:03:42,577 | INFO     | pid: 2368293
[2026-01-10 08:04:16] 2026-01-10 07:03:42,577 | INFO     | pgrp: 2368293
[2026-01-10 08:04:16] 2026-01-10 07:03:42,577 | INFO     | corecount: 12
[2026-01-10 08:04:16] 2026-01-10 07:03:42,577 | INFO     | event service: False
[2026-01-10 08:04:16] 2026-01-10 07:03:42,577 | INFO     | sizes: {0: 2283801, 1: 2284000, 6: 2284262, 11: 2284290, 4649: 2310422, 4650: 2310421, 4651: 2319605, 4653: 2319661, 4660: 2319855}
[2026-01-10 08:04:16] 2026-01-10 07:03:42,577 | INFO     | --------------------------------------------------
[2026-01-10 08:04:16] 2026-01-10 07:03:42,577 | INFO     | 
[2026-01-10 08:04:16] 2026-01-10 07:03:42,577 | INFO     | executing command: ls -lF /scratch/.boinc/slots/4
[2026-01-10 08:04:16] 2026-01-10 07:03:42,605 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,606 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,606 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,606 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,606 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,606 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,606 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,606 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,606 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,606 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,607 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,607 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,607 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,607 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,607 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,607 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,607 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,607 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 08:04:16] 2026-01-10 07:03:42,607 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,607 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 08:04:16] 2026-01-10 07:03:42,608 | INFO     | job 6963194331 has completed (purged errors)
[2026-01-10 08:04:16] 2026-01-10 07:03:42,608 | INFO     | overall cleanup function is called
[2026-01-10 08:04:16] 2026-01-10 07:03:43,618 | INFO     | --- collectZombieJob: --- 10, [2368293]
[2026-01-10 08:04:16] 2026-01-10 07:03:43,618 | INFO     | zombie collector waiting for pid 2368293
[2026-01-10 08:04:16] 2026-01-10 07:03:43,619 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 08:04:16] 2026-01-10 07:03:43,619 | INFO     | collected zombie processes
[2026-01-10 08:04:16] 2026-01-10 07:03:43,619 | INFO     | will attempt to kill all subprocesses of pid=2368293
[2026-01-10 08:04:16] 2026-01-10 07:03:43,979 | INFO     | process IDs to be killed: [2368293] (in reverse order)
[2026-01-10 08:04:16] 2026-01-10 07:03:44,105 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 08:04:16] 2026-01-10 07:03:44,105 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 08:04:16] 2026-01-10 07:03:44,117 | INFO     | did not find any defunct processes belonging to 2368293
[2026-01-10 08:04:16] 2026-01-10 07:03:44,128 | INFO     | did not find any defunct processes belonging to 2368293
[2026-01-10 08:04:16] 2026-01-10 07:03:44,129 | INFO     | ready for new job
[2026-01-10 08:04:16] 2026-01-10 07:03:44,129 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 08:04:16] 2026-01-10 07:03:44,130 | INFO     | ***************************************
[2026-01-10 08:04:16] 2026-01-10 07:03:44,131 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 08:04:16] 2026-01-10 07:03:44,131 | INFO     | ***************************************
[2026-01-10 08:04:16] 2026-01-10 07:03:44,131 | INFO     | 
[2026-01-10 08:04:16] 2026-01-10 07:03:44,137 | INFO     | architecture information:
[2026-01-10 08:04:16] 2026-01-10 07:03:44,137 | INFO     | executing command: cat /etc/os-release
[2026-01-10 08:04:16] 2026-01-10 07:03:44,156 | INFO     | cat /etc/os-release:
[2026-01-10 08:04:16] NAME="CentOS Linux"
[2026-01-10 08:04:16] VERSION="7 (Core)"
[2026-01-10 08:04:16] ID="centos"
[2026-01-10 08:04:16] ID_LIKE="rhel fedora"
[2026-01-10 08:04:16] VERSION_ID="7"
[2026-01-10 08:04:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 08:04:16] ANSI_COLOR="0;31"
[2026-01-10 08:04:16] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 08:04:16] HOME_URL="https://www.centos.org/"
[2026-01-10 08:04:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 08:04:16] 
[2026-01-10 08:04:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 08:04:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 08:04:16] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 08:04:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 08:04:16] 
[2026-01-10 08:04:16] 2026-01-10 07:03:44,156 | INFO     | ***************************************
[2026-01-10 08:04:16] 2026-01-10 07:03:44,658 | INFO     | executing command: df -mP /scratch/.boinc/slots/4
[2026-01-10 08:04:16] 2026-01-10 07:03:44,677 | INFO     | sufficient remaining disk space (1685830238208 B)
[2026-01-10 08:04:16] 2026-01-10 07:03:44,677 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 08:04:16] 2026-01-10 07:03:44,677 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 08:04:16] 2026-01-10 07:03:44,677 | INFO     | update_server=False
[2026-01-10 08:04:16] 2026-01-10 07:03:44,677 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 08:04:16] 2026-01-10 07:03:44,677 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 08:04:16] 2026-01-10 07:03:44,729 | INFO     | all job control threads have been joined
[2026-01-10 08:04:16] 2026-01-10 07:03:44,769 | INFO     | all payload control threads have been joined
[2026-01-10 08:04:16] 2026-01-10 07:03:45,247 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 08:04:16] 2026-01-10 07:03:45,248 | INFO     | aborting loop
[2026-01-10 08:04:16] 2026-01-10 07:03:45,680 | INFO     | [job] retrieve thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:45,735 | INFO     | [job] control thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:45,756 | INFO     | all data control threads have been joined
[2026-01-10 08:04:16] 2026-01-10 07:03:45,775 | INFO     | [payload] control thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:45,832 | INFO     | [data] copytool_in thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:45,841 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:45,991 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:45,994 | INFO     | [payload] failed_post thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:46,196 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 08:04:16] 2026-01-10 07:03:46,252 | INFO     | [job] job monitor thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:46,479 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:46,682 | INFO     | [data] copytool_out thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:46,685 | INFO     | [payload] validate_post thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:46,761 | INFO     | [data] control thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:46,986 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:47,051 | INFO     | [job] validate thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:47,585 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 08:04:16] 2026-01-10 07:03:48,590 | INFO     | [job] queue monitor thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:50,201 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 08:04:16] 2026-01-10 07:03:52,895 | INFO     | [monitor] cgroup control has ended
[2026-01-10 08:04:16] 2026-01-10 07:03:53,903 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139985480492864)>', '<ExcThread(monitor, started 139985114093312)>']
[2026-01-10 08:04:16] 2026-01-10 07:03:58,959 | INFO     | all workflow threads have been joined
[2026-01-10 08:04:16] 2026-01-10 07:03:59,031 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 08:04:16] 2026-01-10 07:03:59,032 | INFO     | traces error code: 0
[2026-01-10 08:04:16] 2026-01-10 07:03:59,032 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 08:04:16] 2026-01-10 07:04:15,723 | INFO     | PID=2360870 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 08:04:16] 2026-01-10 07:04:15,723 | INFO     | .. there are 8 such processes running
[2026-01-10 08:04:16] 2026-01-10 07:04:15,723 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 08:04:16] 2026-01-10 07:04:15,723 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 08:04:16] 2026-01-10 07:04:15,723 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 08:04:16] 2026-01-10 07:04:15,723 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 08:04:16] 2026-01-10 07:04:15,723 | CRITICAL | thread 'MainThread' is not alive
[2026-01-10 08:04:16] 2026-01-10 07:04:15,724 | INFO     | [monitor] control thread has ended
[2026-01-10 08:04:16] 2026-01-10 07:04:15,926 [wrapper] ==== pilot stdout END ====
[2026-01-10 08:04:16] 2026-01-10 07:04:15,930 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 08:04:16] 2026-01-10 07:04:15,933 [wrapper] pilotpid: 2360870
[2026-01-10 08:04:16] 2026-01-10 07:04:15,936 [wrapper] Pilot exit status: 0
[2026-01-10 08:04:16] 2026-01-10 07:04:15,949 [wrapper] pandaids: 6963194331
[2026-01-10 08:04:16] 2026-01-10 07:04:16,037 [wrapper] cleanup supervisor_pilot 2563740 2360871
[2026-01-10 08:04:16] 2026-01-10 07:04:16,041 [wrapper] Test setup, not cleaning
[2026-01-10 08:04:16] 2026-01-10 07:04:16,045 [wrapper] apfmon messages muted
[2026-01-10 08:04:16] 2026-01-10 07:04:16,048 [wrapper] ==== wrapper stdout END ====
[2026-01-10 08:04:16] 2026-01-10 07:04:16,051 [wrapper] ==== wrapper stderr END ====
[2026-01-10 08:04:16]  *** Error codes and diagnostics ***
[2026-01-10 08:04:16]     "exeErrorCode": 0,
[2026-01-10 08:04:16]     "exeErrorDiag": "",
[2026-01-10 08:04:16]     "pilotErrorCode": 0,
[2026-01-10 08:04:16]     "pilotErrorDiag": "",
[2026-01-10 08:04:16]  *** Listing of results directory ***
[2026-01-10 08:04:16] total 441232
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 08:04:16] -rwx------ 1 boinc boinc     36322 Jan  9 05:26 runpilot2-wrapper.sh
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:30 queuedata.json
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc       100 Jan 10 06:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 08:04:16] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 06:45 run_atlas
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc       105 Jan 10 06:45 job.xml
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc      6675 Jan 10 06:45 init_data.xml
[2026-01-10 08:04:16] -rw-r--r-- 2 boinc boinc 223680742 Jan 10 06:45 EVNT.47898824._001514.pool.root.1
[2026-01-10 08:04:16] -rw-r--r-- 2 boinc boinc     15847 Jan 10 06:45 start_atlas.sh
[2026-01-10 08:04:16] drwxrwx--x 2 boinc boinc      4096 Jan 10 06:45 shared
[2026-01-10 08:04:16] -rw-r--r-- 2 boinc boinc    592398 Jan 10 06:45 input.tar.gz
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc         0 Jan 10 06:45 boinc_lockfile
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc      2520 Jan 10 06:45 pandaJob.out
[2026-01-10 08:04:16] -rw------- 1 boinc boinc    989374 Jan 10 06:45 agis_schedconf.cvmfs.json
[2026-01-10 08:04:16] -rw------- 1 boinc boinc   1516240 Jan 10 06:45 agis_ddmendpoints.agis.ALL.json
[2026-01-10 08:04:16] drwx------ 5 boinc boinc      4096 Jan 10 06:45 pilot3
[2026-01-10 08:04:16] -rw------- 1 boinc boinc 222074087 Jan 10 08:03 HITS.47898826._039394.pool.root.1
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc       529 Jan 10 08:03 boinc_task_state.xml
[2026-01-10 08:04:16] -rw------- 1 boinc boinc        95 Jan 10 08:03 pilot_heartbeat.json
[2026-01-10 08:04:16] -rw------- 1 boinc boinc      1019 Jan 10 08:03 memory_monitor_summary.json
[2026-01-10 08:04:16] -rw------- 1 boinc boinc    396016 Jan 10 08:03 log.47898826._039394.job.log.tgz.1
[2026-01-10 08:04:16] -rw------- 1 boinc boinc      7786 Jan 10 08:03 heartbeat.json
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc        27 Jan 10 08:04 wrapper_checkpoint.txt
[2026-01-10 08:04:16] -rw------- 1 boinc boinc       892 Jan 10 08:04 pilotlog.txt
[2026-01-10 08:04:16] -rw------- 1 boinc boinc    681737 Jan 10 08:04 log.47898826._039394.job.log.1
[2026-01-10 08:04:16] -rw------- 1 boinc boinc       357 Jan 10 08:04 output.list
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc       620 Jan 10 08:04 runtime_log
[2026-01-10 08:04:16] -rw------- 1 boinc boinc   1095680 Jan 10 08:04 result.tar.gz
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc      8880 Jan 10 08:04 runtime_log.err
[2026-01-10 08:04:16] -rw------- 1 boinc boinc       663 Jan 10 08:04 iU3NDmlFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5PmKDmLRukGm.diag
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc      8192 Jan 10 08:04 boinc_mmap_file
[2026-01-10 08:04:16] -rw-r--r-- 1 boinc boinc     22113 Jan 10 08:04 stderr.txt
[2026-01-10 08:04:16] HITS file was successfully produced:
[2026-01-10 08:04:16] -rw------- 1 boinc boinc 222074087 Jan 10 08:03 shared/HITS.pool.root.1
[2026-01-10 08:04:16]  *** Contents of shared directory: ***
[2026-01-10 08:04:16] total 436988
[2026-01-10 08:04:16] -rw-r--r-- 2 boinc boinc 223680742 Jan 10 06:45 ATLAS.root_0
[2026-01-10 08:04:16] -rw-r--r-- 2 boinc boinc     15847 Jan 10 06:45 start_atlas.sh
[2026-01-10 08:04:16] -rw-r--r-- 2 boinc boinc    592398 Jan 10 06:45 input.tar.gz
[2026-01-10 08:04:16] -rw------- 1 boinc boinc 222074087 Jan 10 08:03 HITS.pool.root.1
[2026-01-10 08:04:16] -rw------- 1 boinc boinc   1095680 Jan 10 08:04 result.tar.gz
08:04:18 (2356077): run_atlas exited; CPU time 50596.246607
08:04:18 (2356077): called boinc_finish(0)

</stderr_txt>
]]>

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