Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:39:49 (27611): wrapper (7.7.26015): starting
00:39:49 (27611): wrapper: running run_atlas (--nthreads 8)
[2026-01-11 00:39:49] Arguments: --nthreads 8
[2026-01-11 00:39:49] Threads: 8
[2026-01-11 00:39:49] Checking for CVMFS
[2026-01-11 00:39:50] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 00:39:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 00:39:51] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 00:39:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 00:39:52] 2.11.2.0 17161 17769 98224 154997 2 62 21040510 25165825 899 130560 0 2753961 99.502 2798532 3063 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.73.11:3128/ 1
[2026-01-11 00:39:52] CVMFS is ok
[2026-01-11 00:39:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 00:39:53] Checking for apptainer binary...
[2026-01-11 00:39:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-11 00:39:53] Running /usr/bin/apptainer --version
[2026-01-11 00:39:53] apptainer version 1.3.2-1.el7
[2026-01-11 00:39:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 00:40:12] cg-vwn491.simple-grid.lan
[2026-01-11 00:40:12] apptainer works
[2026-01-11 00:40:12] Set ATHENA_PROC_NUMBER=8
[2026-01-11 00:40:12] Set ATHENA_CORE_NUMBER=8
[2026-01-11 00:40:12] Starting ATLAS job with PandaID=6963189990
[2026-01-11 00:40:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 06:17:03]  *** The last 200 lines of the pilot log: ***
[2026-01-11 06:17:03] 2026-01-11 05:16:01,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-11 06:17:03] 2026-01-11 05:16:01,721 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-11 06:17:03] 2026-01-11 05:16:01,722 | INFO     | found 8 cores (1 core per socket, 8 sockets) , CPU MHz: 2249.998
[2026-01-11 06:17:03] 2026-01-11 05:16:01,724 | INFO     | using path: /var/lib/boinc/slots/9/PanDA_Pilot-6963189990/memory_monitor_summary.json (trf name=prmon)
[2026-01-11 06:17:03] 2026-01-11 05:16:01,724 | INFO     | extracted standard info from prmon json
[2026-01-11 06:17:03] 2026-01-11 05:16:01,724 | INFO     | extracted standard memory fields from prmon json
[2026-01-11 06:17:03] 2026-01-11 05:16:01,725 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-11 06:17:03] 2026-01-11 05:16:01,725 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 06:17:03] 2026-01-11 05:16:01,725 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 06:17:03] 2026-01-11 05:16:01,731 | INFO     | fitting pss+swap vs Time
[2026-01-11 06:17:03] 2026-01-11 05:16:01,737 | INFO     | sum of square deviations: 9784425315.0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,740 | INFO     | sum of deviations: 159693927335.00003
[2026-01-11 06:17:03] 2026-01-11 05:16:01,740 | INFO     | mean x: 1768098788.5
[2026-01-11 06:17:03] 2026-01-11 05:16:01,740 | INFO     | mean y: 2442257.4430379746
[2026-01-11 06:17:03] 2026-01-11 05:16:01,740 | INFO     | intersect: -28855117625.911297
[2026-01-11 06:17:03] 2026-01-11 05:16:01,741 | INFO     | chi2: 7.609689544924007
[2026-01-11 06:17:03] 2026-01-11 05:16:01,741 | INFO     | sum of square deviations: 9327281860.0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,744 | INFO     | sum of deviations: 177912660938.9999
[2026-01-11 06:17:03] 2026-01-11 05:16:01,744 | INFO     | mean x: 1768098636.0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,745 | INFO     | mean y: 2448245.4501607716
[2026-01-11 06:17:03] 2026-01-11 05:16:01,745 | INFO     | intersect: -33723039828.668808
[2026-01-11 06:17:03] 2026-01-11 05:16:01,745 | INFO     | chi2: 6.887936646475824
[2026-01-11 06:17:03] 2026-01-11 05:16:01,745 | INFO     | current chi2=6.887936646475824 (change=9.484656294942063 %)
[2026-01-11 06:17:03] 2026-01-11 05:16:01,745 | INFO     | right removable region: 310
[2026-01-11 06:17:03] 2026-01-11 05:16:01,746 | INFO     | sum of square deviations: 9327281860.0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,749 | INFO     | sum of deviations: 49133519818.0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,749 | INFO     | mean x: 1768098941.0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,749 | INFO     | mean y: 2479121.295819936
[2026-01-11 06:17:03] 2026-01-11 05:16:01,749 | INFO     | intersect: -9311373045.042414
[2026-01-11 06:17:03] 2026-01-11 05:16:01,750 | INFO     | chi2: 2.7725188193507333
[2026-01-11 06:17:03] 2026-01-11 05:16:01,750 | INFO     | current chi2=2.7725188193507333 (change=63.565940463364576 %)
[2026-01-11 06:17:03] 2026-01-11 05:16:01,750 | INFO     | sum of square deviations: 8884603792.5
[2026-01-11 06:17:03] 2026-01-11 05:16:01,753 | INFO     | sum of deviations: -18645692398.5
[2026-01-11 06:17:03] 2026-01-11 05:16:01,753 | INFO     | mean x: 1768099093.5
[2026-01-11 06:17:03] 2026-01-11 05:16:01,754 | INFO     | mean y: 2502400.3235294116
[2026-01-11 06:17:03] 2026-01-11 05:16:01,754 | INFO     | intersect: 3713127274.2540226
[2026-01-11 06:17:03] 2026-01-11 05:16:01,754 | INFO     | chi2: 0.862365478643822
[2026-01-11 06:17:03] 2026-01-11 05:16:01,754 | INFO     | current chi2=0.862365478643822 (change=68.89595581371852 %)
[2026-01-11 06:17:03] 2026-01-11 05:16:01,755 | INFO     | sum of square deviations: 8456158550.0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,758 | INFO     | sum of deviations: -22638269614.000004
[2026-01-11 06:17:03] 2026-01-11 05:16:01,758 | INFO     | mean x: 1768099246.0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,758 | INFO     | mean y: 2503802.1295681065
[2026-01-11 06:17:03] 2026-01-11 05:16:01,758 | INFO     | intersect: 4735942419.509575
[2026-01-11 06:17:03] 2026-01-11 05:16:01,759 | INFO     | chi2: 0.8396189565671052
[2026-01-11 06:17:03] 2026-01-11 05:16:01,759 | INFO     | current chi2=0.8396189565671052 (change=2.6376893138728783 %)
[2026-01-11 06:17:03] 2026-01-11 05:16:01,759 | INFO     | left removable region: 30
[2026-01-11 06:17:03] 2026-01-11 05:16:01,759 | INFO     | sum of square deviations: 6806862510.0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,762 | INFO     | sum of deviations: 5888251919.999999
[2026-01-11 06:17:03] 2026-01-11 05:16:01,762 | INFO     | mean x: 1768099520.5
[2026-01-11 06:17:03] 2026-01-11 05:16:01,762 | INFO     | mean y: 2507994.3642857145
[2026-01-11 06:17:03] 2026-01-11 05:16:01,762 | INFO     | intersect: -1526980133.3950634
[2026-01-11 06:17:03] 2026-01-11 05:16:01,762 | INFO     | chi2: 0.0015536095389114967
[2026-01-11 06:17:03] 2026-01-11 05:16:01,763 | INFO     | current memory leak: 0.87 B/s (using 280 data points, chi2=0.00)
[2026-01-11 06:17:03] 2026-01-11 05:16:01,763 | INFO     | could have reported an average CPU frequency of 2249 MHz (14 samples)
[2026-01-11 06:17:03] 2026-01-11 05:16:01,764 | INFO     | ..............................
[2026-01-11 06:17:03] 2026-01-11 05:16:01,764 | INFO     | . Timing measurements:
[2026-01-11 06:17:03] 2026-01-11 05:16:01,764 | INFO     | . get job = 0 s
[2026-01-11 06:17:03] 2026-01-11 05:16:01,764 | INFO     | . initial setup = 11 s
[2026-01-11 06:17:03] 2026-01-11 05:16:01,764 | INFO     | . payload setup = 148 s
[2026-01-11 06:17:03] 2026-01-11 05:16:01,764 | INFO     | . stage-in = 0 s
[2026-01-11 06:17:03] 2026-01-11 05:16:01,764 | INFO     | . payload execution = 19420 s
[2026-01-11 06:17:03] 2026-01-11 05:16:01,764 | INFO     | . stage-out = 6 s
[2026-01-11 06:17:03] 2026-01-11 05:16:01,764 | INFO     | . log creation = 1 s
[2026-01-11 06:17:03] 2026-01-11 05:16:01,764 | INFO     | ..............................
[2026-01-11 06:17:03] 2026-01-11 05:16:01,993 | INFO     | 
[2026-01-11 06:17:03] 2026-01-11 05:16:01,994 | INFO     | job summary report
[2026-01-11 06:17:03] 2026-01-11 05:16:01,994 | INFO     | --------------------------------------------------
[2026-01-11 06:17:03] 2026-01-11 05:16:01,994 | INFO     | PanDA job id: 6963189990
[2026-01-11 06:17:03] 2026-01-11 05:16:01,994 | INFO     | task id: 47898826
[2026-01-11 06:17:03] 2026-01-11 05:16:01,994 | INFO     | errors: (none)
[2026-01-11 06:17:03] 2026-01-11 05:16:01,994 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 06:17:03] 2026-01-11 05:16:01,994 | INFO     | pilot state: finished 
[2026-01-11 06:17:03] 2026-01-11 05:16:01,994 | INFO     | transexitcode: 0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,994 | INFO     | exeerrorcode: 0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,994 | INFO     | exeerrordiag: 
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | exitcode: 0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | exitmsg: OK
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | cpuconsumptiontime: 73199 s
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | nevents: 400
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | neventsw: 0
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | pid: 5729
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | pgrp: 5729
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | corecount: 8
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | event service: False
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | sizes: {0: 2283137, 1: 2283993, 12: 2283993, 23: 2284021, 34: 2284049, 44: 2284077, 55: 2284233, 66: 2284261, 76: 2284289, 87: 2284345, 98: 2284373, 101: 2284943, 
[2026-01-11 06:17:03] 2026-01-11 05:16:01,995 | INFO     | --------------------------------------------------
[2026-01-11 06:17:03] 2026-01-11 05:16:01,996 | INFO     | 
[2026-01-11 06:17:03] 2026-01-11 05:16:01,996 | INFO     | executing command: ls -lF /var/lib/boinc/slots/9
[2026-01-11 06:17:03] 2026-01-11 05:16:02,039 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,039 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,039 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,039 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,040 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,040 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,040 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,040 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,040 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,040 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,040 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,040 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,040 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,040 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,041 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,041 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,041 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,041 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 06:17:03] 2026-01-11 05:16:02,041 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,041 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 06:17:03] 2026-01-11 05:16:02,041 | INFO     | job 6963189990 has completed (purged errors)
[2026-01-11 06:17:03] 2026-01-11 05:16:02,041 | INFO     | overall cleanup function is called
[2026-01-11 06:17:03] 2026-01-11 05:16:03,050 | INFO     | --- collectZombieJob: --- 10, [5729]
[2026-01-11 06:17:03] 2026-01-11 05:16:03,051 | INFO     | zombie collector waiting for pid 5729
[2026-01-11 06:17:03] 2026-01-11 05:16:03,051 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 06:17:03] 2026-01-11 05:16:03,051 | INFO     | collected zombie processes
[2026-01-11 06:17:03] 2026-01-11 05:16:03,051 | INFO     | will attempt to kill all subprocesses of pid=5729
[2026-01-11 06:17:03] 2026-01-11 05:16:03,125 | INFO     | process IDs to be killed: [5729] (in reverse order)
[2026-01-11 06:17:03] 2026-01-11 05:16:03,782 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 06:17:03] 2026-01-11 05:16:03,782 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 06:17:03] 2026-01-11 05:16:03,784 | INFO     | did not find any defunct processes belonging to 5729
[2026-01-11 06:17:03] 2026-01-11 05:16:03,786 | INFO     | did not find any defunct processes belonging to 5729
[2026-01-11 06:17:03] 2026-01-11 05:16:03,786 | INFO     | ready for new job
[2026-01-11 06:17:03] 2026-01-11 05:16:03,786 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 06:17:03] 2026-01-11 05:16:03,788 | INFO     | ***************************************
[2026-01-11 06:17:03] 2026-01-11 05:16:03,789 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 06:17:03] 2026-01-11 05:16:03,789 | INFO     | ***************************************
[2026-01-11 06:17:03] 2026-01-11 05:16:03,789 | INFO     | 
[2026-01-11 06:17:03] 2026-01-11 05:16:03,789 | INFO     | pilot is running in a VM
[2026-01-11 06:17:03] 2026-01-11 05:16:03,790 | INFO     | architecture information:
[2026-01-11 06:17:03] 2026-01-11 05:16:03,795 | INFO     | executing command: cat /etc/os-release
[2026-01-11 06:17:03] 2026-01-11 05:16:04,035 | INFO     | cat /etc/os-release:
[2026-01-11 06:17:03] NAME="CentOS Linux"
[2026-01-11 06:17:03] VERSION="7 (Core)"
[2026-01-11 06:17:03] ID="centos"
[2026-01-11 06:17:03] ID_LIKE="rhel fedora"
[2026-01-11 06:17:03] VERSION_ID="7"
[2026-01-11 06:17:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 06:17:03] ANSI_COLOR="0;31"
[2026-01-11 06:17:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 06:17:03] HOME_URL="https://www.centos.org/"
[2026-01-11 06:17:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 06:17:03] 
[2026-01-11 06:17:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 06:17:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 06:17:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 06:17:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 06:17:03] 
[2026-01-11 06:17:03] 2026-01-11 05:16:04,035 | INFO     | ***************************************
[2026-01-11 06:17:03] 2026-01-11 05:16:04,539 | INFO     | executing command: df -mP /var/lib/boinc/slots/9
[2026-01-11 06:17:03] 2026-01-11 05:16:04,782 | INFO     | sufficient remaining disk space (496792240128 B)
[2026-01-11 06:17:03] 2026-01-11 05:16:04,782 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 06:17:03] 2026-01-11 05:16:04,783 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 06:17:03] 2026-01-11 05:16:04,783 | INFO     | update_server=False
[2026-01-11 06:17:03] 2026-01-11 05:16:04,783 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 06:17:03] 2026-01-11 05:16:04,785 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:17:03] 2026-01-11 05:16:04,786 | INFO     | aborting loop
[2026-01-11 06:17:03] 2026-01-11 05:16:04,989 | INFO     | all payload control threads have been joined
[2026-01-11 06:17:03] 2026-01-11 05:16:05,000 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 06:17:03] 2026-01-11 05:16:05,375 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 06:17:03] 2026-01-11 05:16:05,730 | INFO     | all data control threads have been joined
[2026-01-11 06:17:03] 2026-01-11 05:16:05,789 | INFO     | [job] retrieve thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:05,791 | INFO     | [job] job monitor thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:05,807 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:05,935 | INFO     | all job control threads have been joined
[2026-01-11 06:17:03] 2026-01-11 05:16:05,955 | INFO     | [data] copytool_in thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:05,985 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:05,996 | INFO     | [payload] control thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:06,247 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:06,303 | INFO     | [job] validate thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:06,476 | INFO     | [payload] validate_post thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:06,674 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:06,736 | INFO     | [data] control thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:06,890 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 06:17:03] 2026-01-11 05:16:06,941 | INFO     | [job] control thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:07,009 | INFO     | [data] copytool_out thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:07,124 | INFO     | [payload] failed_post thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:07,896 | INFO     | [job] queue monitor thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:09,384 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 06:17:03] 2026-01-11 05:16:34,349 | INFO     | PID=31349 has CPU usage=1.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-11 06:17:03] 2026-01-11 05:16:34,350 | INFO     | .. there are 2 such processes running
[2026-01-11 06:17:03] 2026-01-11 05:16:34,350 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 06:17:03] 2026-01-11 05:16:34,351 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 06:17:03] 2026-01-11 05:16:34,351 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 06:17:03] 2026-01-11 05:16:51,957 | INFO     | [monitor] cgroup control has ended
[2026-01-11 06:17:03] 2026-01-11 05:16:52,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139796761130816)>', '<ExcThread(monitor, started 139795799987968)>']
[2026-01-11 06:17:03] 2026-01-11 05:16:53,464 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 06:17:03] 2026-01-11 05:16:53,465 | INFO     | [monitor] control thread has ended
[2026-01-11 06:17:03] 2026-01-11 05:16:57,621 | INFO     | all workflow threads have been joined
[2026-01-11 06:17:03] 2026-01-11 05:16:57,622 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 06:17:03] 2026-01-11 05:16:57,622 | INFO     | traces error code: 0
[2026-01-11 06:17:03] 2026-01-11 05:16:57,622 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 06:17:03] 2026-01-11 05:16:58,143 [wrapper] ==== pilot stdout END ====
[2026-01-11 06:17:03] 2026-01-11 05:16:58,191 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 06:17:03] 2026-01-11 05:16:58,283 [wrapper] pilotpid: 31349
[2026-01-11 06:17:03] 2026-01-11 05:16:58,400 [wrapper] Pilot exit status: 0
[2026-01-11 06:17:03] 2026-01-11 05:16:58,865 [wrapper] pandaids: 6963189990
[2026-01-11 06:17:03] 2026-01-11 05:16:59,964 [wrapper] cleanup supervisor_pilot  3250 31350
[2026-01-11 06:17:03] 2026-01-11 05:17:00,084 [wrapper] Test setup, not cleaning
[2026-01-11 06:17:03] 2026-01-11 05:17:00,148 [wrapper] apfmon messages muted
[2026-01-11 06:17:03] 2026-01-11 05:17:00,273 [wrapper] ==== wrapper stdout END ====
[2026-01-11 06:17:03] 2026-01-11 05:17:00,408 [wrapper] ==== wrapper stderr END ====
[2026-01-11 06:17:03]  *** Error codes and diagnostics ***
[2026-01-11 06:17:03]     "exeErrorCode": 0,
[2026-01-11 06:17:03]     "exeErrorDiag": "",
[2026-01-11 06:17:03]     "pilotErrorCode": 0,
[2026-01-11 06:17:03]     "pilotErrorDiag": "",
[2026-01-11 06:17:03]  *** Listing of results directory ***
[2026-01-11 06:17:03] total 446208
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-11 06:17:03] -rwx------. 1 boinc boinc     36322 Jan  9 05:23 runpilot2-wrapper.sh
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc      5112 Jan  9 05:24 queuedata.json
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc       100 Jan 11 00:39 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 06:17:03] -rwxr-xr-x. 1 boinc boinc      7986 Jan 11 00:39 run_atlas
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc       105 Jan 11 00:39 job.xml
[2026-01-11 06:17:03] -rw-r--r--. 2 boinc boinc 226007878 Jan 11 00:39 EVNT.47898824._001482.pool.root.1
[2026-01-11 06:17:03] -rw-r--r--. 2 boinc boinc     15847 Jan 11 00:39 start_atlas.sh
[2026-01-11 06:17:03] drwxrwx--x. 2 boinc boinc        68 Jan 11 00:39 shared
[2026-01-11 06:17:03] -rw-r--r--. 2 boinc boinc    592391 Jan 11 00:39 input.tar.gz
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc      6391 Jan 11 00:39 init_data.xml
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc         0 Jan 11 00:39 boinc_lockfile
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc      2517 Jan 11 00:40 pandaJob.out
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc    989548 Jan 11 00:44 agis_schedconf.cvmfs.json
[2026-01-11 06:17:03] drwx------. 5 boinc boinc      4096 Jan 11 00:44 pilot3
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc 220655158 Jan 11 06:12 HITS.47898826._038575.pool.root.1
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc       531 Jan 11 06:12 boinc_task_state.xml
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc      1012 Jan 11 06:13 memory_monitor_summary.json
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc   1516240 Jan 11 06:14 agis_ddmendpoints.agis.ALL.json
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc    513680 Jan 11 06:14 log.47898826._038575.job.log.tgz.1
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc        95 Jan 11 06:15 pilot_heartbeat.json
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc      7786 Jan 11 06:16 heartbeat.json
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc        28 Jan 11 06:16 wrapper_checkpoint.txt
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc      8192 Jan 11 06:16 boinc_mmap_file
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc      4884 Jan 11 06:16 pilotlog.txt
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc   2665880 Jan 11 06:17 log.47898826._038575.job.log.1
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc       357 Jan 11 06:17 output.list
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc       620 Jan 11 06:17 runtime_log
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc   3194880 Jan 11 06:17 result.tar.gz
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc      8817 Jan 11 06:17 runtime_log.err
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc       657 Jan 11 06:17 HmVLDmrCJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm4ygKDmugSAEm.diag
[2026-01-11 06:17:03] -rw-r--r--. 1 boinc boinc     20786 Jan 11 06:17 stderr.txt
[2026-01-11 06:17:03] HITS file was successfully produced:
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc 220655158 Jan 11 06:12 shared/HITS.pool.root.1
[2026-01-11 06:17:03]  *** Contents of shared directory: ***
[2026-01-11 06:17:03] total 439912
[2026-01-11 06:17:03] -rw-r--r--. 2 boinc boinc 226007878 Jan 11 00:39 ATLAS.root_0
[2026-01-11 06:17:03] -rw-r--r--. 2 boinc boinc     15847 Jan 11 00:39 start_atlas.sh
[2026-01-11 06:17:03] -rw-r--r--. 2 boinc boinc    592391 Jan 11 00:39 input.tar.gz
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc 220655158 Jan 11 06:12 HITS.pool.root.1
[2026-01-11 06:17:03] -rw-------. 1 boinc boinc   3194880 Jan 11 06:17 result.tar.gz
06:17:04 (27611): run_atlas exited; CPU time 73385.259309
06:17:04 (27611): called boinc_finish(0)

</stderr_txt>
]]>

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