Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:25:35 (2884043): wrapper (7.7.26015): starting
09:25:35 (2884043): wrapper: running run_atlas (--nthreads 6)
[2026-01-10 09:25:35] Arguments: --nthreads 6
[2026-01-10 09:25:35] Threads: 6
[2026-01-10 09:25:35] Checking for CVMFS
[2026-01-10 09:25:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 09:25:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 09:25:35] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 09:25:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 09:25:35] 2.13.3.0 2126625 1148 73700 154962 3 83 47017873 52428800 1845 130560 0 2431080 99.996 42686 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 09:25:35] CVMFS is ok
[2026-01-10 09:25:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 09:25:35] Checking for apptainer binary...
[2026-01-10 09:25:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 09:25:35] Running /usr/bin/apptainer --version
[2026-01-10 09:25:35] apptainer version 1.4.4-1.el9
[2026-01-10 09:25:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 09:25:35] testio008
[2026-01-10 09:25:35] apptainer works
[2026-01-10 09:25:35] Set ATHENA_PROC_NUMBER=6
[2026-01-10 09:25:35] Set ATHENA_CORE_NUMBER=6
[2026-01-10 09:25:35] Starting ATLAS job with PandaID=6963194293
[2026-01-10 09:25:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 11:06:59]  *** The last 200 lines of the pilot log: ***
[2026-01-10 11:06:59] 2026-01-10 02:05:36,714 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:05:37,069 | INFO     | time since job start (5994s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:39,074 | INFO     | time since job start (5996s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:39,217 | INFO     | monitor loop #475: job 0:6963194293 is in state 'finished'
[2026-01-10 11:06:59] 2026-01-10 02:05:39,217 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:05:41,079 | INFO     | time since job start (5998s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:41,720 | INFO     | monitor loop #476: job 0:6963194293 is in state 'finished'
[2026-01-10 11:06:59] 2026-01-10 02:05:41,720 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:05:43,084 | INFO     | time since job start (6000s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:44,222 | INFO     | monitor loop #477: job 0:6963194293 is in state 'finished'
[2026-01-10 11:06:59] 2026-01-10 02:05:44,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:05:45,090 | INFO     | time since job start (6002s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:46,724 | INFO     | monitor loop #478: job 0:6963194293 is in state 'finished'
[2026-01-10 11:06:59] 2026-01-10 02:05:46,724 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:05:47,094 | INFO     | time since job start (6004s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:49,099 | INFO     | time since job start (6006s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:49,226 | INFO     | monitor loop #479: job 0:6963194293 is in state 'finished'
[2026-01-10 11:06:59] 2026-01-10 02:05:49,226 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:05:51,104 | INFO     | time since job start (6008s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:51,727 | INFO     | monitor loop #480: job 0:6963194293 is in state 'finished'
[2026-01-10 11:06:59] 2026-01-10 02:05:51,727 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:05:52,146 | INFO     | PID=2887820 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 11:06:59] 2026-01-10 02:05:52,147 | INFO     | .. there are 3 such processes running
[2026-01-10 11:06:59] 2026-01-10 02:05:53,147 | INFO     | time since job start (6010s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:54,229 | INFO     | monitor loop #481: job 0:6963194293 is in state 'finished'
[2026-01-10 11:06:59] 2026-01-10 02:05:54,229 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:05:55,151 | INFO     | time since job start (6012s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:56,731 | INFO     | monitor loop #482: job 0:6963194293 is in state 'finished'
[2026-01-10 11:06:59] 2026-01-10 02:05:56,731 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:05:57,156 | INFO     | time since job start (6014s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:59,161 | INFO     | time since job start (6016s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:05:59,233 | INFO     | monitor loop #483: job 0:6963194293 is in state 'finished'
[2026-01-10 11:06:59] 2026-01-10 02:05:59,233 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:06:01,166 | INFO     | time since job start (6018s) is within the limit (349056.0s)
[2026-01-10 11:06:59] 2026-01-10 02:06:01,736 | INFO     | monitor loop #484: job 0:6963194293 is in state 'finished'
[2026-01-10 11:06:59] 2026-01-10 02:06:01,736 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-10 11:06:59] 2026-01-10 02:06:02,404 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 11:06:59] 2026-01-10 02:06:02,406 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 1980.3734
[2026-01-10 11:06:59] 2026-01-10 02:06:02,409 | INFO     | using path: /var/lib/boinc/slots/5/PanDA_Pilot-6963194293/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 11:06:59] 2026-01-10 02:06:02,409 | INFO     | extracted standard info from prmon json
[2026-01-10 11:06:59] 2026-01-10 02:06:02,410 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 11:06:59] 2026-01-10 02:06:02,410 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 11:06:59] 2026-01-10 02:06:02,410 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 11:06:59] 2026-01-10 02:06:02,410 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 11:06:59] 2026-01-10 02:06:02,411 | INFO     | fitting pss+swap vs Time
[2026-01-10 11:06:59] 2026-01-10 02:06:02,412 | INFO     | sum of square deviations: 226022842.5
[2026-01-10 11:06:59] 2026-01-10 02:06:02,412 | INFO     | sum of deviations: -20556786438.999996
[2026-01-10 11:06:59] 2026-01-10 02:06:02,412 | INFO     | mean x: 1768007782.5
[2026-01-10 11:06:59] 2026-01-10 02:06:02,412 | INFO     | mean y: 2596386.2
[2026-01-10 11:06:59] 2026-01-10 02:06:02,412 | INFO     | intersect: 160802973929.2019
[2026-01-10 11:06:59] 2026-01-10 02:06:02,412 | INFO     | chi2: 0.08664580519077442
[2026-01-10 11:06:59] 2026-01-10 02:06:02,412 | INFO     | current memory leak: -90.95 B/s (using 90 data points, chi2=0.09)
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | could have reported an average CPU frequency of 3944 MHz (7 samples)
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | ..............................
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | . Timing measurements:
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | . get job = 0 s
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | . initial setup = 3 s
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | . payload setup = 3 s
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | . stage-in = 0 s
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | . payload execution = 5915 s
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | . stage-out = 0 s
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | . log creation = 0 s
[2026-01-10 11:06:59] 2026-01-10 02:06:02,413 | INFO     | ..............................
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | 
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | job summary report
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | --------------------------------------------------
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | PanDA job id: 6963194293
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | task id: 47898826
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | errors: (none)
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | pilot state: finished 
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | transexitcode: 0
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | exeerrorcode: 0
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | exeerrordiag: 
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | exitcode: 0
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | exitmsg: OK
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | cpuconsumptiontime: 32808 s
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | nevents: 400
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | neventsw: 0
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | pid: 2894537
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | pgrp: 2894537
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | corecount: 6
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | event service: False
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | sizes: {0: 2283971, 3: 2284233, 11: 2284261, 5923: 2311072, 5925: 2320126, 6006: 2320264}
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | --------------------------------------------------
[2026-01-10 11:06:59] 2026-01-10 02:06:02,577 | INFO     | 
[2026-01-10 11:06:59] 2026-01-10 02:06:02,578 | INFO     | executing command: ls -lF /var/lib/boinc/slots/5
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 11:06:59] 2026-01-10 02:06:02,586 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,587 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 11:06:59] 2026-01-10 02:06:02,587 | INFO     | job 6963194293 has completed (purged errors)
[2026-01-10 11:06:59] 2026-01-10 02:06:02,587 | INFO     | overall cleanup function is called
[2026-01-10 11:06:59] 2026-01-10 02:06:03,592 | INFO     | --- collectZombieJob: --- 10, [2894537]
[2026-01-10 11:06:59] 2026-01-10 02:06:03,593 | INFO     | zombie collector waiting for pid 2894537
[2026-01-10 11:06:59] 2026-01-10 02:06:03,593 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 11:06:59] 2026-01-10 02:06:03,593 | INFO     | collected zombie processes
[2026-01-10 11:06:59] 2026-01-10 02:06:03,593 | INFO     | will attempt to kill all subprocesses of pid=2894537
[2026-01-10 11:06:59] 2026-01-10 02:06:03,621 | INFO     | process IDs to be killed: [2894537] (in reverse order)
[2026-01-10 11:06:59] 2026-01-10 02:06:03,639 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 11:06:59] 2026-01-10 02:06:03,639 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 11:06:59] 2026-01-10 02:06:03,641 | INFO     | did not find any defunct processes belonging to 2894537
[2026-01-10 11:06:59] 2026-01-10 02:06:03,642 | INFO     | did not find any defunct processes belonging to 2894537
[2026-01-10 11:06:59] 2026-01-10 02:06:03,642 | INFO     | ready for new job
[2026-01-10 11:06:59] 2026-01-10 02:06:03,642 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 11:06:59] 2026-01-10 02:06:03,642 | INFO     | ***************************************
[2026-01-10 11:06:59] 2026-01-10 02:06:03,642 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 11:06:59] 2026-01-10 02:06:03,643 | INFO     | ***************************************
[2026-01-10 11:06:59] 2026-01-10 02:06:03,643 | INFO     | 
[2026-01-10 11:06:59] 2026-01-10 02:06:03,643 | INFO     | architecture information:
[2026-01-10 11:06:59] 2026-01-10 02:06:03,643 | INFO     | executing command: cat /etc/os-release
[2026-01-10 11:06:59] 2026-01-10 02:06:03,649 | INFO     | cat /etc/os-release:
[2026-01-10 11:06:59] NAME="CentOS Linux"
[2026-01-10 11:06:59] VERSION="7 (Core)"
[2026-01-10 11:06:59] ID="centos"
[2026-01-10 11:06:59] ID_LIKE="rhel fedora"
[2026-01-10 11:06:59] VERSION_ID="7"
[2026-01-10 11:06:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 11:06:59] ANSI_COLOR="0;31"
[2026-01-10 11:06:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 11:06:59] HOME_URL="https://www.centos.org/"
[2026-01-10 11:06:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 11:06:59] 
[2026-01-10 11:06:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 11:06:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 11:06:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 11:06:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 11:06:59] 
[2026-01-10 11:06:59] 2026-01-10 02:06:03,649 | INFO     | ***************************************
[2026-01-10 11:06:59] 2026-01-10 02:06:04,152 | INFO     | executing command: df -mP /var/lib/boinc/slots/5
[2026-01-10 11:06:59] 2026-01-10 02:06:04,158 | INFO     | sufficient remaining disk space (278519611392 B)
[2026-01-10 11:06:59] 2026-01-10 02:06:04,158 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 11:06:59] 2026-01-10 02:06:04,159 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 11:06:59] 2026-01-10 02:06:04,159 | INFO     | update_server=False
[2026-01-10 11:06:59] 2026-01-10 02:06:04,159 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 11:06:59] 2026-01-10 02:06:04,159 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 11:06:59] 2026-01-10 02:06:04,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 11:06:59] 2026-01-10 02:06:04,159 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:06:59] 2026-01-10 02:06:04,183 | INFO     | all data control threads have been joined
[2026-01-10 11:06:59] 2026-01-10 02:06:04,239 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 11:06:59] 2026-01-10 02:06:04,239 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 11:06:59] 2026-01-10 02:06:04,239 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 11:06:59] 2026-01-10 02:06:04,239 | INFO     | will abort loop
[2026-01-10 11:06:59] 2026-01-10 02:06:04,486 | INFO     | all payload control threads have been joined
[2026-01-10 11:06:59] 2026-01-10 02:06:05,163 | INFO     | [job] retrieve thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:05,164 | INFO     | [job] queue monitor thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:05,174 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:05,188 | INFO     | [data] control thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:05,244 | INFO     | [job] job monitor thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:05,336 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:05,491 | INFO     | [payload] control thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:05,523 | INFO     | [payload] validate_post thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:05,650 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:05,814 | INFO     | all job control threads have been joined
[2026-01-10 11:06:59] 2026-01-10 02:06:06,007 | INFO     | [data] copytool_in thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:06,164 | INFO     | [data] copytool_out thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:06,305 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:06,355 | INFO     | [job] validate thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:06,472 | INFO     | [payload] failed_post thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:06,819 | INFO     | [job] control thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:08,162 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 11:06:59] 2026-01-10 02:06:34,264 | INFO     | PID=2887820 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 11:06:59] 2026-01-10 02:06:34,264 | INFO     | .. there are 3 such processes running
[2026-01-10 11:06:59] 2026-01-10 02:06:34,265 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 11:06:59] 2026-01-10 02:06:34,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 11:06:59] 2026-01-10 02:06:34,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 11:06:59] 2026-01-10 02:06:52,880 | INFO     | [monitor] cgroup control has ended
[2026-01-10 11:06:59] 2026-01-10 02:06:54,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140650577823552)>', '<ExcThread(monitor, started 140650221651712)>']
[2026-01-10 11:06:59] 2026-01-10 02:06:55,368 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 11:06:59] 2026-01-10 02:06:55,368 | INFO     | [monitor] control thread has ended
[2026-01-10 11:06:59] 2026-01-10 02:06:59,654 | INFO     | all workflow threads have been joined
[2026-01-10 11:06:59] 2026-01-10 02:06:59,654 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 11:06:59] 2026-01-10 02:06:59,654 | INFO     | traces error code: 0
[2026-01-10 11:06:59] 2026-01-10 02:06:59,654 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 11:06:59] 2026-01-10 02:06:59,703 [wrapper] ==== pilot stdout END ====
[2026-01-10 11:06:59] 2026-01-10 02:06:59,704 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 11:06:59] 2026-01-10 02:06:59,704 [wrapper] pilotpid: 2887820
[2026-01-10 11:06:59] 2026-01-10 02:06:59,705 [wrapper] Pilot exit status: 0
[2026-01-10 11:06:59] 2026-01-10 02:06:59,709 [wrapper] pandaids: 6963194293
[2026-01-10 11:06:59] 2026-01-10 02:06:59,719 [wrapper] cleanup supervisor_pilot 2956482 2887821
[2026-01-10 11:06:59] 2026-01-10 02:06:59,720 [wrapper] Test setup, not cleaning
[2026-01-10 11:06:59] 2026-01-10 02:06:59,721 [wrapper] apfmon messages muted
[2026-01-10 11:06:59] 2026-01-10 02:06:59,722 [wrapper] ==== wrapper stdout END ====
[2026-01-10 11:06:59] 2026-01-10 02:06:59,723 [wrapper] ==== wrapper stderr END ====
[2026-01-10 11:06:59]  *** Error codes and diagnostics ***
[2026-01-10 11:06:59]     "exeErrorCode": 0,
[2026-01-10 11:06:59]     "exeErrorDiag": "",
[2026-01-10 11:06:59]     "pilotErrorCode": 0,
[2026-01-10 11:06:59]     "pilotErrorDiag": "",
[2026-01-10 11:06:59]  *** Listing of results directory ***
[2026-01-10 11:06:59] total 444964
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc    579449 Jan  9 13:21 pilot3.tar.gz
[2026-01-10 11:06:59] -rwx------. 1 boinc boinc     36322 Jan  9 13:26 runpilot2-wrapper.sh
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc      5112 Jan  9 13:30 queuedata.json
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc       100 Jan 10 09:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 11:06:59] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 09:25 run_atlas
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc       105 Jan 10 09:25 job.xml
[2026-01-10 11:06:59] -rw-r--r--. 2 boinc boinc 223266981 Jan 10 09:25 EVNT.47898824._001513.pool.root.1
[2026-01-10 11:06:59] -rw-r--r--. 2 boinc boinc     15847 Jan 10 09:25 start_atlas.sh
[2026-01-10 11:06:59] drwxrwx--x. 2 boinc boinc        68 Jan 10 09:25 shared
[2026-01-10 11:06:59] -rw-r--r--. 2 boinc boinc    592397 Jan 10 09:25 input.tar.gz
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc      9525 Jan 10 09:25 init_data.xml
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc         0 Jan 10 09:25 boinc_lockfile
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc      2520 Jan 10 09:25 pandaJob.out
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc    989374 Jan 10 09:25 agis_schedconf.cvmfs.json
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc   1516240 Jan 10 09:25 agis_ddmendpoints.agis.ALL.json
[2026-01-10 11:06:59] drwx------. 5 boinc boinc      4096 Jan 10 09:25 pilot3
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc 226074569 Jan 10 11:04 HITS.47898826._039356.pool.root.1
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc       529 Jan 10 11:04 boinc_task_state.xml
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc      1019 Jan 10 11:04 memory_monitor_summary.json
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc    308814 Jan 10 11:04 log.47898826._039356.job.log.tgz.1
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc      7766 Jan 10 11:06 heartbeat.json
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc        95 Jan 10 11:06 pilot_heartbeat.json
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc        27 Jan 10 11:06 wrapper_checkpoint.txt
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc      8192 Jan 10 11:06 boinc_mmap_file
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc      5010 Jan 10 11:06 pilotlog.txt
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc    890687 Jan 10 11:06 log.47898826._039356.job.log.1
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc       357 Jan 10 11:06 output.list
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc       620 Jan 10 11:06 runtime_log
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc   1218560 Jan 10 11:06 result.tar.gz
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc       642 Jan 10 11:06 ub3LDmlFJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHDhKDmZTWn4n.diag
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc      8775 Jan 10 11:06 runtime_log.err
[2026-01-10 11:06:59] -rw-r--r--. 1 boinc boinc     22002 Jan 10 11:06 stderr.txt
[2026-01-10 11:06:59] HITS file was successfully produced:
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc 226074569 Jan 10 11:04 shared/HITS.pool.root.1
[2026-01-10 11:06:59]  *** Contents of shared directory: ***
[2026-01-10 11:06:59] total 440600
[2026-01-10 11:06:59] -rw-r--r--. 2 boinc boinc 223266981 Jan 10 09:25 ATLAS.root_0
[2026-01-10 11:06:59] -rw-r--r--. 2 boinc boinc     15847 Jan 10 09:25 start_atlas.sh
[2026-01-10 11:06:59] -rw-r--r--. 2 boinc boinc    592397 Jan 10 09:25 input.tar.gz
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc 226074569 Jan 10 11:04 HITS.pool.root.1
[2026-01-10 11:06:59] -rw-------. 1 boinc boinc   1218560 Jan 10 11:06 result.tar.gz
11:07:00 (2884043): run_atlas exited; CPU time 32850.576729
11:07:00 (2884043): called boinc_finish(0)

</stderr_txt>
]]>

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