Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
10:34:59 (2936703): wrapper (7.7.26015): starting
10:34:59 (2936703): wrapper: running run_atlas (--nthreads 6)
[2026-01-10 10:34:59] Arguments: --nthreads 6
[2026-01-10 10:34:59] Threads: 6
[2026-01-10 10:34:59] Checking for CVMFS
[2026-01-10 10:34:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 10:34:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 10:34:59] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 10:34:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 10:34:59] 2.13.3.0 2126625 1217 73784 154963 0 83 47022406 52428800 1858 130560 0 2610313 99.996 44034 15 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 10:34:59] CVMFS is ok
[2026-01-10 10:34:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 10:34:59] Checking for apptainer binary...
[2026-01-10 10:34:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 10:34:59] Running /usr/bin/apptainer --version
[2026-01-10 10:34:59] apptainer version 1.4.4-1.el9
[2026-01-10 10:34:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 10:34:59] testio008
[2026-01-10 10:34:59] apptainer works
[2026-01-10 10:34:59] Set ATHENA_PROC_NUMBER=6
[2026-01-10 10:34:59] Set ATHENA_CORE_NUMBER=6
[2026-01-10 10:34:59] Starting ATLAS job with PandaID=6963734390
[2026-01-10 10:34:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 12:12:40]  *** The last 200 lines of the pilot log: ***
[2026-01-10 12:12:40]  lfn=log.47898826._039745.job.log.tgz.1
[2026-01-10 12:12:40]  mtime=0
[2026-01-10 12:12:40]  protocol_id=None
[2026-01-10 12:12:40]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 12:12:40]  replicas=None
[2026-01-10 12:12:40]  scope=mc23_13p6TeV
[2026-01-10 12:12:40]  status=None
[2026-01-10 12:12:40]  status_code=0
[2026-01-10 12:12:40]  storage_token=
[2026-01-10 12:12:40]  surl=/var/lib/boinc/slots/2/PanDA_Pilot-6963734390/log.47898826._039745.job.log.tgz.1
[2026-01-10 12:12:40]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/6e/log.47898826._039745.job.log.tgz.1
[2026-01-10 12:12:40]  workdir=None
[2026-01-10 12:12:40] ]
[2026-01-10 12:12:40] 2026-01-10 03:12:06,202 | INFO     | transferring file log.47898826._039745.job.log.tgz.1 from /var/lib/boinc/slots/2/PanDA_Pilot-6963734390/log.47898826._039745.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-01-10 12:12:40] 2026-01-10 03:12:06,202 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/2/PanDA_Pilot-6963734390/log.47898826._039745.job.log.tgz.1 /var/lib/boinc/slots/2/log.47898826._039745.job
[2026-01-10 12:12:40] 2026-01-10 03:12:06,210 | INFO     | adding to output.list: log.47898826._039745.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/92/6e/log.47898826._039745.job.log.tg
[2026-01-10 12:12:40] 2026-01-10 03:12:06,211 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 12:12:40] 2026-01-10 03:12:06,211 | INFO     | summary of transferred files:
[2026-01-10 12:12:40] 2026-01-10 03:12:06,211 | INFO     |  -- lfn=log.47898826._039745.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 12:12:40] 2026-01-10 03:12:06,211 | INFO     | stage-out finished correctly
[2026-01-10 12:12:40] 2026-01-10 03:12:06,253 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 12:12:40] 2026-01-10 03:12:06,466 | INFO     | job 6963734390 has state=finished
[2026-01-10 12:12:40] 2026-01-10 03:12:06,467 | INFO     | preparing for final server update for job 6963734390 in state='finished'
[2026-01-10 12:12:40] 2026-01-10 03:12:06,467 | INFO     | this job has now completed (state=finished)
[2026-01-10 12:12:40] 2026-01-10 03:12:06,467 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 12:12:40] 2026-01-10 03:12:06,467 | INFO     | log transfer has been attempted: DONE
[2026-01-10 12:12:40] 2026-01-10 03:12:06,467 | INFO     | job 6963734390 has finished - writing final server update
[2026-01-10 12:12:40] 2026-01-10 03:12:06,467 | INFO     | total number of processed events: 400 (read)
[2026-01-10 12:12:40] 2026-01-10 03:12:06,467 | INFO     | executing command: lscpu
[2026-01-10 12:12:40] 2026-01-10 03:12:06,480 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 12:12:40] 2026-01-10 03:12:07,191 | INFO     | time since job start (5804s) is within the limit (349056.0s)
[2026-01-10 12:12:40] 2026-01-10 03:12:08,300 | WARNING  | process 2947196 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 12:12:40] 2026-01-10 03:12:08,300 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6963734390/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:12:40] 2026-01-10 03:12:08,334 | INFO     | number of running child processes to parent process 2947196: 1
[2026-01-10 12:12:40] 2026-01-10 03:12:08,334 | INFO     | maximum number of monitored processes: 6
[2026-01-10 12:12:40] 2026-01-10 03:12:08,945 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 12:12:40] 2026-01-10 03:12:08,947 | INFO     | found 12 cores (12 cores per socket, 1 socket) , CPU MHz: 4279.8628499999995
[2026-01-10 12:12:40] 2026-01-10 03:12:08,949 | INFO     | using path: /var/lib/boinc/slots/2/PanDA_Pilot-6963734390/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 12:12:40] 2026-01-10 03:12:08,949 | INFO     | extracted standard info from prmon json
[2026-01-10 12:12:40] 2026-01-10 03:12:08,949 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 12:12:40] 2026-01-10 03:12:08,949 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 12:12:40] 2026-01-10 03:12:08,949 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 12:12:40] 2026-01-10 03:12:08,949 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 12:12:40] 2026-01-10 03:12:08,950 | INFO     | fitting pss+swap vs Time
[2026-01-10 12:12:40] 2026-01-10 03:12:08,950 | INFO     | sum of square deviations: 211285822.0
[2026-01-10 12:12:40] 2026-01-10 03:12:08,950 | INFO     | sum of deviations: -19652942912.000004
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | mean x: 1768011901.5
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | mean y: 2584085.4545454546
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | intersect: 164455819229.24982
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | chi2: 0.12233668253460533
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | current memory leak: -93.02 B/s (using 88 data points, chi2=0.12)
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | could have reported an average CPU frequency of 3301 MHz (7 samples)
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | ..............................
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | . Timing measurements:
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | . get job = 0 s
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | . initial setup = 21 s
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | . payload setup = 2 s
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | . stage-in = 0 s
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | . payload execution = 5781 s
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | . stage-out = 0 s
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | . log creation = 0 s
[2026-01-10 12:12:40] 2026-01-10 03:12:08,951 | INFO     | ..............................
[2026-01-10 12:12:40] 2026-01-10 03:12:08,993 | INFO     | 
[2026-01-10 12:12:40] 2026-01-10 03:12:08,993 | INFO     | job summary report
[2026-01-10 12:12:40] 2026-01-10 03:12:08,993 | INFO     | --------------------------------------------------
[2026-01-10 12:12:40] 2026-01-10 03:12:08,993 | INFO     | PanDA job id: 6963734390
[2026-01-10 12:12:40] 2026-01-10 03:12:08,993 | INFO     | task id: 47898826
[2026-01-10 12:12:40] 2026-01-10 03:12:08,993 | INFO     | errors: (none)
[2026-01-10 12:12:40] 2026-01-10 03:12:08,993 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 12:12:40] 2026-01-10 03:12:08,993 | INFO     | pilot state: finished 
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | transexitcode: 0
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | exeerrorcode: 0
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | exeerrordiag: 
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | exitcode: 0
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | exitmsg: OK
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | cpuconsumptiontime: 32138 s
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | nevents: 400
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | neventsw: 0
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | pid: 2947196
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | pgrp: 2947196
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | corecount: 6
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | event service: False
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | sizes: {0: 2283917, 3: 2284179, 10: 2284207, 5787: 2310905, 5788: 2319958, 5791: 2320096}
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | --------------------------------------------------
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | 
[2026-01-10 12:12:40] 2026-01-10 03:12:08,994 | INFO     | executing command: ls -lF /var/lib/boinc/slots/2
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | job 6963734390 has completed (purged errors)
[2026-01-10 12:12:40] 2026-01-10 03:12:09,005 | INFO     | overall cleanup function is called
[2026-01-10 12:12:40] 2026-01-10 03:12:10,011 | INFO     | --- collectZombieJob: --- 10, [2947196]
[2026-01-10 12:12:40] 2026-01-10 03:12:10,011 | INFO     | zombie collector waiting for pid 2947196
[2026-01-10 12:12:40] 2026-01-10 03:12:10,011 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 12:12:40] 2026-01-10 03:12:10,011 | INFO     | collected zombie processes
[2026-01-10 12:12:40] 2026-01-10 03:12:10,011 | INFO     | will attempt to kill all subprocesses of pid=2947196
[2026-01-10 12:12:40] 2026-01-10 03:12:10,046 | INFO     | process IDs to be killed: [2947196] (in reverse order)
[2026-01-10 12:12:40] 2026-01-10 03:12:10,067 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 12:12:40] 2026-01-10 03:12:10,067 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 12:12:40] 2026-01-10 03:12:10,069 | INFO     | did not find any defunct processes belonging to 2947196
[2026-01-10 12:12:40] 2026-01-10 03:12:10,071 | INFO     | did not find any defunct processes belonging to 2947196
[2026-01-10 12:12:40] 2026-01-10 03:12:10,071 | INFO     | ready for new job
[2026-01-10 12:12:40] 2026-01-10 03:12:10,071 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 12:12:40] 2026-01-10 03:12:10,072 | INFO     | ***************************************
[2026-01-10 12:12:40] 2026-01-10 03:12:10,072 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 12:12:40] 2026-01-10 03:12:10,072 | INFO     | ***************************************
[2026-01-10 12:12:40] 2026-01-10 03:12:10,072 | INFO     | 
[2026-01-10 12:12:40] 2026-01-10 03:12:10,072 | INFO     | architecture information:
[2026-01-10 12:12:40] 2026-01-10 03:12:10,072 | INFO     | executing command: cat /etc/os-release
[2026-01-10 12:12:40] 2026-01-10 03:12:10,083 | INFO     | cat /etc/os-release:
[2026-01-10 12:12:40] NAME="CentOS Linux"
[2026-01-10 12:12:40] VERSION="7 (Core)"
[2026-01-10 12:12:40] ID="centos"
[2026-01-10 12:12:40] ID_LIKE="rhel fedora"
[2026-01-10 12:12:40] VERSION_ID="7"
[2026-01-10 12:12:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 12:12:40] ANSI_COLOR="0;31"
[2026-01-10 12:12:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 12:12:40] HOME_URL="https://www.centos.org/"
[2026-01-10 12:12:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 12:12:40] 
[2026-01-10 12:12:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 12:12:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 12:12:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 12:12:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 12:12:40] 
[2026-01-10 12:12:40] 2026-01-10 03:12:10,084 | INFO     | ***************************************
[2026-01-10 12:12:40] 2026-01-10 03:12:10,586 | INFO     | executing command: df -mP /var/lib/boinc/slots/2
[2026-01-10 12:12:40] 2026-01-10 03:12:10,594 | INFO     | sufficient remaining disk space (279340646400 B)
[2026-01-10 12:12:40] 2026-01-10 03:12:10,594 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 12:12:40] 2026-01-10 03:12:10,594 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 12:12:40] 2026-01-10 03:12:10,594 | INFO     | update_server=False
[2026-01-10 12:12:40] 2026-01-10 03:12:10,594 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 12:12:40] 2026-01-10 03:12:10,594 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:12:40] 2026-01-10 03:12:10,829 | INFO     | all data control threads have been joined
[2026-01-10 12:12:40] 2026-01-10 03:12:10,833 | INFO     | all payload control threads have been joined
[2026-01-10 12:12:40] 2026-01-10 03:12:10,836 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 12:12:40] 2026-01-10 03:12:10,836 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 12:12:40] 2026-01-10 03:12:10,836 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 12:12:40] 2026-01-10 03:12:10,836 | INFO     | will abort loop
[2026-01-10 12:12:40] 2026-01-10 03:12:11,599 | INFO     | [job] queue monitor thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:11,599 | INFO     | [job] retrieve thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:11,628 | INFO     | [payload] validate_post thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:11,759 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 12:12:40] 2026-01-10 03:12:11,828 | INFO     | [data] copytool_in thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:11,834 | INFO     | [data] control thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:11,838 | INFO     | [payload] control thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:11,841 | INFO     | [job] job monitor thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:12,171 | INFO     | all job control threads have been joined
[2026-01-10 12:12:40] 2026-01-10 03:12:12,286 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:12,299 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 12:12:40] 2026-01-10 03:12:12,346 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:12,420 | INFO     | [job] validate thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:12,501 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:13,081 | INFO     | [payload] failed_post thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:13,176 | INFO     | [job] control thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:13,764 | INFO     | [data] copytool_out thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:16,304 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:20,996 | INFO     | job.realtimelogging is not enabled
[2026-01-10 12:12:40] 2026-01-10 03:12:22,001 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 12:12:40] 2026-01-10 03:12:32,670 | INFO     | [monitor] cgroup control has ended
[2026-01-10 12:12:40] 2026-01-10 03:12:33,530 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139673404794688)>', '<ExcThread(monitor, started 139673041090304)>']
[2026-01-10 12:12:40] 2026-01-10 03:12:38,555 | INFO     | all workflow threads have been joined
[2026-01-10 12:12:40] 2026-01-10 03:12:38,556 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 12:12:40] 2026-01-10 03:12:38,556 | INFO     | traces error code: 0
[2026-01-10 12:12:40] 2026-01-10 03:12:38,556 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 12:12:40] 2026-01-10 03:12:40,290 | INFO     | PID=2940481 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 12:12:40] 2026-01-10 03:12:40,290 | INFO     | .. there are 3 such processes running
[2026-01-10 12:12:40] 2026-01-10 03:12:40,290 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 12:12:40] 2026-01-10 03:12:40,290 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 12:12:40] 2026-01-10 03:12:40,290 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 12:12:40] 2026-01-10 03:12:40,290 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 12:12:40] 2026-01-10 03:12:40,290 | INFO     | [monitor] control thread has ended
[2026-01-10 12:12:40] 2026-01-10 03:12:40,342 [wrapper] ==== pilot stdout END ====
[2026-01-10 12:12:40] 2026-01-10 03:12:40,343 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 12:12:40] 2026-01-10 03:12:40,344 [wrapper] pilotpid: 2940481
[2026-01-10 12:12:40] 2026-01-10 03:12:40,345 [wrapper] Pilot exit status: 0
[2026-01-10 12:12:40] 2026-01-10 03:12:40,348 [wrapper] pandaids: 6963734390
[2026-01-10 12:12:40] 2026-01-10 03:12:40,359 [wrapper] cleanup supervisor_pilot 3007847 2940482
[2026-01-10 12:12:40] 2026-01-10 03:12:40,360 [wrapper] Test setup, not cleaning
[2026-01-10 12:12:40] 2026-01-10 03:12:40,361 [wrapper] apfmon messages muted
[2026-01-10 12:12:40] 2026-01-10 03:12:40,362 [wrapper] ==== wrapper stdout END ====
[2026-01-10 12:12:40] 2026-01-10 03:12:40,363 [wrapper] ==== wrapper stderr END ====
[2026-01-10 12:12:40]  *** Error codes and diagnostics ***
[2026-01-10 12:12:40]     "exeErrorCode": 0,
[2026-01-10 12:12:40]     "exeErrorDiag": "",
[2026-01-10 12:12:40]     "pilotErrorCode": 0,
[2026-01-10 12:12:40]     "pilotErrorDiag": "",
[2026-01-10 12:12:40]  *** Listing of results directory ***
[2026-01-10 12:12:40] total 438816
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc    579449 Jan  9 13:21 pilot3.tar.gz
[2026-01-10 12:12:40] -rwx------. 1 boinc boinc     36322 Jan  9 13:26 runpilot2-wrapper.sh
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc      5112 Jan  9 13:32 queuedata.json
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc       100 Jan 10 10:34 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 12:12:40] -rwxr-xr-x. 1 boinc boinc      7986 Jan 10 10:34 run_atlas
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc       105 Jan 10 10:34 job.xml
[2026-01-10 12:12:40] -rw-r--r--. 2 boinc boinc     15847 Jan 10 10:34 start_atlas.sh
[2026-01-10 12:12:40] drwxrwx--x. 2 boinc boinc        68 Jan 10 10:34 shared
[2026-01-10 12:12:40] -rw-r--r--. 2 boinc boinc    592404 Jan 10 10:34 input.tar.gz
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc      9525 Jan 10 10:34 init_data.xml
[2026-01-10 12:12:40] -rw-r--r--. 2 boinc boinc 222404950 Jan 10 10:34 EVNT.47898824._000472.pool.root.1
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc         0 Jan 10 10:34 boinc_lockfile
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc      2518 Jan 10 10:34 pandaJob.out
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc    989382 Jan 10 10:35 agis_schedconf.cvmfs.json
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc   1516240 Jan 10 10:35 agis_ddmendpoints.agis.ALL.json
[2026-01-10 12:12:40] drwx------. 5 boinc boinc      4096 Jan 10 10:35 pilot3
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc 220747768 Jan 10 12:11 HITS.47898826._039745.pool.root.1
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc        95 Jan 10 12:11 pilot_heartbeat.json
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc       529 Jan 10 12:11 boinc_task_state.xml
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc      1017 Jan 10 12:12 memory_monitor_summary.json
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc    300820 Jan 10 12:12 log.47898826._039745.job.log.tgz.1
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc      7763 Jan 10 12:12 heartbeat.json
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc      8192 Jan 10 12:12 boinc_mmap_file
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc        27 Jan 10 12:12 wrapper_checkpoint.txt
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc       822 Jan 10 12:12 pilotlog.txt
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc    845132 Jan 10 12:12 log.47898826._039745.job.log.1
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc       357 Jan 10 12:12 output.list
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc       620 Jan 10 12:12 runtime_log
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc   1167360 Jan 10 12:12 result.tar.gz
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc       643 Jan 10 12:12 Zn5NDmxFJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmsEhKDmZF1AZm.diag
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc      8775 Jan 10 12:12 runtime_log.err
[2026-01-10 12:12:40] -rw-r--r--. 1 boinc boinc     21333 Jan 10 12:12 stderr.txt
[2026-01-10 12:12:40] HITS file was successfully produced:
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc 220747768 Jan 10 12:11 shared/HITS.pool.root.1
[2026-01-10 12:12:40]  *** Contents of shared directory: ***
[2026-01-10 12:12:40] total 434508
[2026-01-10 12:12:40] -rw-r--r--. 2 boinc boinc     15847 Jan 10 10:34 start_atlas.sh
[2026-01-10 12:12:40] -rw-r--r--. 2 boinc boinc    592404 Jan 10 10:34 input.tar.gz
[2026-01-10 12:12:40] -rw-r--r--. 2 boinc boinc 222404950 Jan 10 10:34 ATLAS.root_0
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc 220747768 Jan 10 12:11 HITS.pool.root.1
[2026-01-10 12:12:40] -rw-------. 1 boinc boinc   1167360 Jan 10 12:12 result.tar.gz
12:12:41 (2936703): run_atlas exited; CPU time 32179.125720
12:12:41 (2936703): called boinc_finish(0)

</stderr_txt>
]]>

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