Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
06:51:15 (1485088): wrapper (7.7.26015): starting
06:51:15 (1485088): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 06:51:15] Arguments: --nthreads 12
[2026-01-11 06:51:15] Threads: 12
[2026-01-11 06:51:15] Checking for CVMFS
[2026-01-11 06:51:15] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 06:51:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 06:51:15] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 06:51:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 06:51:16] 2.13.3.0 40677 2939 60120 155007 0 253 3220484 4096000 10378 130560 0 15926252 99.967 322716 279 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-11 06:51:16] CVMFS is ok
[2026-01-11 06:51:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 06:51:16] Checking for apptainer binary...
[2026-01-11 06:51:16] apptainer is not installed, using version from CVMFS
[2026-01-11 06:51:16] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 06:51:18] epyc7v12
[2026-01-11 06:51:18] apptainer works
[2026-01-11 06:51:18] Set ATHENA_PROC_NUMBER=12
[2026-01-11 06:51:18] Set ATHENA_CORE_NUMBER=12
[2026-01-11 06:51:18] Starting ATLAS job with PandaID=6963580563
[2026-01-11 06:51:18] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 09:46:20]  *** The last 200 lines of the pilot log: ***
[2026-01-11 09:46:20] 2026-01-11 09:45:30,716 | INFO     | intersect: -66407755612.771866
[2026-01-11 09:46:20] 2026-01-11 09:45:30,716 | INFO     | chi2: 2.1942988389195515
[2026-01-11 09:46:20] 2026-01-11 09:45:30,716 | INFO     | sum of square deviations: 1367706498.9939044
[2026-01-11 09:46:20] 2026-01-11 09:45:30,717 | INFO     | sum of deviations: 54229219163.16463
[2026-01-11 09:46:20] 2026-01-11 09:45:30,718 | INFO     | mean x: 1768119364.5060976
[2026-01-11 09:46:20] 2026-01-11 09:45:30,718 | INFO     | mean y: 2610339.3353658537
[2026-01-11 09:46:20] 2026-01-11 09:45:30,718 | INFO     | intersect: -70102878371.12213
[2026-01-11 09:46:20] 2026-01-11 09:45:30,721 | INFO     | chi2: 2.1937456734175256
[2026-01-11 09:46:20] 2026-01-11 09:45:30,721 | INFO     | current chi2=2.1937456734175256 (change=0.025209214543369128 %)
[2026-01-11 09:46:20] 2026-01-11 09:45:30,721 | INFO     | right removable region: 163
[2026-01-11 09:46:20] 2026-01-11 09:45:30,722 | INFO     | sum of square deviations: 1367705888.9939044
[2026-01-11 09:46:20] 2026-01-11 09:45:30,724 | INFO     | sum of deviations: 17127331329.073168
[2026-01-11 09:46:20] 2026-01-11 09:45:30,724 | INFO     | mean x: 1768119669.5060976
[2026-01-11 09:46:20] 2026-01-11 09:45:30,724 | INFO     | mean y: 2658584.926829268
[2026-01-11 09:46:20] 2026-01-11 09:45:30,724 | INFO     | intersect: -22138922914.995518
[2026-01-11 09:46:20] 2026-01-11 09:45:30,724 | INFO     | chi2: 0.1289234973297887
[2026-01-11 09:46:20] 2026-01-11 09:45:30,724 | INFO     | current chi2=0.1289234973297887 (change=94.1246153421259 %)
[2026-01-11 09:46:20] 2026-01-11 09:45:30,725 | INFO     | sum of square deviations: 1246382378.9937139
[2026-01-11 09:46:20] 2026-01-11 09:45:30,728 | INFO     | sum of deviations: 6600052672.981135
[2026-01-11 09:46:20] 2026-01-11 09:45:30,728 | INFO     | mean x: 1768119822.0062892
[2026-01-11 09:46:20] 2026-01-11 09:45:30,728 | INFO     | mean y: 2671738.0188679243
[2026-01-11 09:46:20] 2026-01-11 09:45:30,728 | INFO     | intersect: -9360172405.208862
[2026-01-11 09:46:20] 2026-01-11 09:45:30,728 | INFO     | chi2: 0.002752250097495795
[2026-01-11 09:46:20] 2026-01-11 09:45:30,728 | INFO     | current chi2=0.002752250097495795 (change=97.86520676641629 %)
[2026-01-11 09:46:20] 2026-01-11 09:45:30,729 | INFO     | sum of square deviations: 1132454356.493509
[2026-01-11 09:46:20] 2026-01-11 09:45:30,732 | INFO     | sum of deviations: 5166913357.571428
[2026-01-11 09:46:20] 2026-01-11 09:45:30,732 | INFO     | mean x: 1768119974.5064936
[2026-01-11 09:46:20] 2026-01-11 09:45:30,734 | INFO     | mean y: 2673667.9285714286
[2026-01-11 09:46:20] 2026-01-11 09:45:30,734 | INFO     | intersect: -8064514790.204062
[2026-01-11 09:46:20] 2026-01-11 09:45:30,734 | INFO     | chi2: 0.000536658308663542
[2026-01-11 09:46:20] 2026-01-11 09:45:30,735 | INFO     | current chi2=0.000536658308663542 (change=80.5011067434666 %)
[2026-01-11 09:46:20] 2026-01-11 09:45:30,735 | INFO     | sum of square deviations: 1025689258.9932907
[2026-01-11 09:46:20] 2026-01-11 09:45:30,736 | INFO     | sum of deviations: 4371624145.912753
[2026-01-11 09:46:20] 2026-01-11 09:45:30,736 | INFO     | mean x: 1768120127.0067115
[2026-01-11 09:46:20] 2026-01-11 09:45:30,736 | INFO     | mean y: 2674800.087248322
[2026-01-11 09:46:20] 2026-01-11 09:45:30,736 | INFO     | intersect: -7533288526.352758
[2026-01-11 09:46:20] 2026-01-11 09:45:30,736 | INFO     | chi2: 0.00036756411371183906
[2026-01-11 09:46:20] 2026-01-11 09:45:30,736 | INFO     | current chi2=0.00036756411371183906 (change=31.5087257985074 %)
[2026-01-11 09:46:20] 2026-01-11 09:45:30,737 | INFO     | sum of square deviations: 925854523.9930569
[2026-01-11 09:46:20] 2026-01-11 09:45:30,740 | INFO     | sum of deviations: 3725998762.131944
[2026-01-11 09:46:20] 2026-01-11 09:45:30,740 | INFO     | mean x: 1768120279.5069444
[2026-01-11 09:46:20] 2026-01-11 09:45:30,740 | INFO     | mean y: 2675787.3680555555
[2026-01-11 09:46:20] 2026-01-11 09:45:30,740 | INFO     | intersect: -7112928016.489003
[2026-01-11 09:46:20] 2026-01-11 09:45:30,740 | INFO     | chi2: 0.0002860843330352426
[2026-01-11 09:46:20] 2026-01-11 09:45:30,740 | INFO     | current chi2=0.0002860843330352426 (change=22.16750156966481 %)
[2026-01-11 09:46:20] 2026-01-11 09:45:30,740 | INFO     | left removable region: 50
[2026-01-11 09:46:20] 2026-01-11 09:45:30,741 | INFO     | sum of square deviations: 447377416.9911509
[2026-01-11 09:46:20] 2026-01-11 09:45:30,741 | INFO     | sum of deviations: 1468514039.646018
[2026-01-11 09:46:20] 2026-01-11 09:45:30,741 | INFO     | mean x: 1768120859.0088496
[2026-01-11 09:46:20] 2026-01-11 09:45:30,742 | INFO     | mean y: 2679006.353982301
[2026-01-11 09:46:20] 2026-01-11 09:45:30,742 | INFO     | intersect: -5801168498.306344
[2026-01-11 09:46:20] 2026-01-11 09:45:30,745 | INFO     | chi2: 5.83195648747056e-05
[2026-01-11 09:46:20] 2026-01-11 09:45:30,745 | INFO     | current memory leak: 3.28 B/s (using 113 data points, chi2=0.00)
[2026-01-11 09:46:20] 2026-01-11 09:45:30,748 | INFO     | could have reported an average CPU frequency of 2508 MHz (9 samples)
[2026-01-11 09:46:20] 2026-01-11 09:45:30,748 | INFO     | ..............................
[2026-01-11 09:46:20] 2026-01-11 09:45:30,748 | INFO     | . Timing measurements:
[2026-01-11 09:46:20] 2026-01-11 09:45:30,748 | INFO     | . get job = 0 s
[2026-01-11 09:46:20] 2026-01-11 09:45:30,748 | INFO     | . initial setup = 3 s
[2026-01-11 09:46:20] 2026-01-11 09:45:30,749 | INFO     | . payload setup = 21 s
[2026-01-11 09:46:20] 2026-01-11 09:45:30,749 | INFO     | . stage-in = 0 s
[2026-01-11 09:46:20] 2026-01-11 09:45:30,749 | INFO     | . payload execution = 10325 s
[2026-01-11 09:46:20] 2026-01-11 09:45:30,749 | INFO     | . stage-out = 3 s
[2026-01-11 09:46:20] 2026-01-11 09:45:30,749 | INFO     | . log creation = 0 s
[2026-01-11 09:46:20] 2026-01-11 09:45:30,749 | INFO     | ..............................
[2026-01-11 09:46:20] 2026-01-11 09:45:31,402 | INFO     | 
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | job summary report
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | --------------------------------------------------
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | PanDA job id: 6963580563
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | task id: 47898826
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | errors: (none)
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | pilot state: finished 
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | transexitcode: 0
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | exeerrorcode: 0
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | exeerrordiag: 
[2026-01-11 09:46:20] 2026-01-11 09:45:31,403 | INFO     | exitcode: 0
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | exitmsg: OK
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | cpuconsumptiontime: 63035 s
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | nevents: 400
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | neventsw: 0
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | pid: 1498900
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | pgrp: 1498900
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | corecount: 12
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | event service: False
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | sizes: {0: 2283711, 1: 2283795, 2: 2283994, 13: 2283994, 17: 2284312, 23: 2284340, 10350: 2313519, 10351: 2313518, 10355: 2322618, 10358: 2322674, 10375: 2322932}
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | --------------------------------------------------
[2026-01-11 09:46:20] 2026-01-11 09:45:31,404 | INFO     | 
[2026-01-11 09:46:20] 2026-01-11 09:45:31,405 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-01-11 09:46:20] 2026-01-11 09:45:31,504 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,507 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,507 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,507 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,507 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,507 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,507 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,507 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,507 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,508 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 09:46:20] 2026-01-11 09:45:31,509 | INFO     | job 6963580563 has completed (purged errors)
[2026-01-11 09:46:20] 2026-01-11 09:45:31,509 | INFO     | overall cleanup function is called
[2026-01-11 09:46:20] 2026-01-11 09:45:32,529 | INFO     | --- collectZombieJob: --- 10, [1498900]
[2026-01-11 09:46:20] 2026-01-11 09:45:32,529 | INFO     | zombie collector waiting for pid 1498900
[2026-01-11 09:46:20] 2026-01-11 09:45:32,530 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 09:46:20] 2026-01-11 09:45:32,530 | INFO     | collected zombie processes
[2026-01-11 09:46:20] 2026-01-11 09:45:32,530 | INFO     | will attempt to kill all subprocesses of pid=1498900
[2026-01-11 09:46:20] 2026-01-11 09:45:33,668 | INFO     | process IDs to be killed: [1498900] (in reverse order)
[2026-01-11 09:46:20] 2026-01-11 09:45:34,130 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 09:46:20] 2026-01-11 09:45:34,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 09:46:20] 2026-01-11 09:45:34,184 | INFO     | did not find any defunct processes belonging to 1498900
[2026-01-11 09:46:20] 2026-01-11 09:45:34,240 | INFO     | did not find any defunct processes belonging to 1498900
[2026-01-11 09:46:20] 2026-01-11 09:45:34,243 | INFO     | ready for new job
[2026-01-11 09:46:20] 2026-01-11 09:45:34,243 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 09:46:20] 2026-01-11 09:45:34,250 | INFO     | ***************************************
[2026-01-11 09:46:20] 2026-01-11 09:45:34,250 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 09:46:20] 2026-01-11 09:45:34,250 | INFO     | ***************************************
[2026-01-11 09:46:20] 2026-01-11 09:45:34,250 | INFO     | 
[2026-01-11 09:46:20] 2026-01-11 09:45:34,276 | INFO     | architecture information:
[2026-01-11 09:46:20] 2026-01-11 09:45:34,280 | INFO     | executing command: cat /etc/os-release
[2026-01-11 09:46:20] 2026-01-11 09:45:34,376 | INFO     | cat /etc/os-release:
[2026-01-11 09:46:20] NAME="CentOS Linux"
[2026-01-11 09:46:20] VERSION="7 (Core)"
[2026-01-11 09:46:20] ID="centos"
[2026-01-11 09:46:20] ID_LIKE="rhel fedora"
[2026-01-11 09:46:20] VERSION_ID="7"
[2026-01-11 09:46:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 09:46:20] ANSI_COLOR="0;31"
[2026-01-11 09:46:20] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 09:46:20] HOME_URL="https://www.centos.org/"
[2026-01-11 09:46:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 09:46:20] 
[2026-01-11 09:46:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 09:46:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 09:46:20] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 09:46:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 09:46:20] 
[2026-01-11 09:46:20] 2026-01-11 09:45:34,376 | INFO     | ***************************************
[2026-01-11 09:46:20] 2026-01-11 09:45:34,883 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/1
[2026-01-11 09:46:20] 2026-01-11 09:45:34,955 | INFO     | sufficient remaining disk space (371487408128 B)
[2026-01-11 09:46:20] 2026-01-11 09:45:34,955 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 09:46:20] 2026-01-11 09:45:34,956 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 09:46:20] 2026-01-11 09:45:34,956 | INFO     | update_server=False
[2026-01-11 09:46:20] 2026-01-11 09:45:34,958 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 09:46:20] 2026-01-11 09:45:34,958 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 09:46:20] 2026-01-11 09:45:34,958 | INFO     | aborting loop
[2026-01-11 09:46:20] 2026-01-11 09:45:35,639 | INFO     | all payload control threads have been joined
[2026-01-11 09:46:20] 2026-01-11 09:45:35,861 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 09:46:20] 2026-01-11 09:45:35,974 | INFO     | [job] retrieve thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:35,977 | INFO     | [job] job monitor thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:35,993 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 09:46:20] 2026-01-11 09:45:36,048 | INFO     | all data control threads have been joined
[2026-01-11 09:46:20] 2026-01-11 09:45:36,192 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:36,327 | INFO     | all job control threads have been joined
[2026-01-11 09:46:20] 2026-01-11 09:45:36,524 | INFO     | [data] copytool_in thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:36,645 | INFO     | [payload] control thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:36,743 | INFO     | [payload] validate_post thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:37,012 | INFO     | [job] queue monitor thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:37,059 | INFO     | [data] control thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:37,157 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:37,172 | INFO     | [job] validate thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:37,220 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:37,334 | INFO     | [job] control thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:37,399 | INFO     | [payload] failed_post thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:37,411 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 09:46:20] 2026-01-11 09:45:37,872 | INFO     | [data] copytool_out thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:41,422 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:45:45,442 | INFO     | job.realtimelogging is not enabled
[2026-01-11 09:46:20] 2026-01-11 09:45:46,448 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 09:46:20] 2026-01-11 09:46:04,309 | INFO     | PID=1489292 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 09:46:20] 2026-01-11 09:46:04,309 | INFO     | .. there are 12 such processes running
[2026-01-11 09:46:20] 2026-01-11 09:46:04,310 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 09:46:20] 2026-01-11 09:46:04,310 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 09:46:20] 2026-01-11 09:46:04,310 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 09:46:20] 2026-01-11 09:46:11,376 | INFO     | [monitor] cgroup control has ended
[2026-01-11 09:46:20] 2026-01-11 09:46:13,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 138787796289344)>', '<ExcThread(monitor, started 138787027937024)>']
[2026-01-11 09:46:20] 2026-01-11 09:46:13,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 09:46:20] 2026-01-11 09:46:13,357 | INFO     | [monitor] control thread has ended
[2026-01-11 09:46:20] 2026-01-11 09:46:18,128 | INFO     | all workflow threads have been joined
[2026-01-11 09:46:20] 2026-01-11 09:46:18,128 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 09:46:20] 2026-01-11 09:46:18,129 | INFO     | traces error code: 0
[2026-01-11 09:46:20] 2026-01-11 09:46:18,129 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 09:46:20] 2026-01-11 09:46:19,410 [wrapper] ==== pilot stdout END ====
[2026-01-11 09:46:20] 2026-01-11 09:46:19,426 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 09:46:20] 2026-01-11 09:46:19,437 [wrapper] pilotpid: 1489292
[2026-01-11 09:46:20] 2026-01-11 09:46:19,446 [wrapper] Pilot exit status: 0
[2026-01-11 09:46:20] 2026-01-11 09:46:19,487 [wrapper] pandaids: 6963580563
[2026-01-11 09:46:20] 2026-01-11 09:46:19,712 [wrapper] cleanup supervisor_pilot 1797552 1489293
[2026-01-11 09:46:20] 2026-01-11 09:46:19,725 [wrapper] Test setup, not cleaning
[2026-01-11 09:46:20] 2026-01-11 09:46:19,734 [wrapper] apfmon messages muted
[2026-01-11 09:46:20] 2026-01-11 09:46:19,753 [wrapper] ==== wrapper stdout END ====
[2026-01-11 09:46:20] 2026-01-11 09:46:19,775 [wrapper] ==== wrapper stderr END ====
[2026-01-11 09:46:20]  *** Error codes and diagnostics ***
[2026-01-11 09:46:20]     "exeErrorCode": 0,
[2026-01-11 09:46:20]     "exeErrorDiag": "",
[2026-01-11 09:46:20]     "pilotErrorCode": 0,
[2026-01-11 09:46:20]     "pilotErrorDiag": "",
[2026-01-11 09:46:20]  *** Listing of results directory ***
[2026-01-11 09:46:20] total 444168
[2026-01-11 09:46:20] -rw-r--r-- 1 boinc boinc    579449 Jan  9 04:21 pilot3.tar.gz
[2026-01-11 09:46:20] -rwx------ 1 boinc boinc     36322 Jan  9 04:26 runpilot2-wrapper.sh
[2026-01-11 09:46:20] -rw-r--r-- 1 boinc boinc      5112 Jan  9 04:30 queuedata.json
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc       100 Jan 11 06:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 09:46:20] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 06:51 run_atlas
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc       105 Jan 11 06:51 job.xml
[2026-01-11 09:46:20] -rw-r--r-- 2 boinc boinc 225910099 Jan 11 06:51 EVNT.47898824._000512.pool.root.1
[2026-01-11 09:46:20] -rw-r--r-- 2 boinc boinc     15847 Jan 11 06:51 start_atlas.sh
[2026-01-11 09:46:20] drwxrwx--x 2 boinc boinc      4096 Jan 11 06:51 shared
[2026-01-11 09:46:20] -rw-r--r-- 2 boinc boinc    592403 Jan 11 06:51 input.tar.gz
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc      7052 Jan 11 06:51 init_data.xml
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc         0 Jan 11 06:51 boinc_setup_complete
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc         0 Jan 11 06:51 boinc_lockfile
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc      2517 Jan 11 06:51 pandaJob.out
[2026-01-11 09:46:20] -rw------- 1 boinc boinc    989548 Jan 11 06:51 agis_schedconf.cvmfs.json
[2026-01-11 09:46:20] -rw------- 1 boinc boinc   1516240 Jan 11 06:51 agis_ddmendpoints.agis.ALL.json
[2026-01-11 09:46:20] drwx------ 5 boinc boinc      4096 Jan 11 06:51 pilot3
[2026-01-11 09:46:20] -rw------- 1 boinc boinc 221205954 Jan 11 09:44 HITS.47898826._039658.pool.root.1
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc       531 Jan 11 09:44 boinc_task_state.xml
[2026-01-11 09:46:20] -rw------- 1 boinc boinc      1023 Jan 11 09:45 memory_monitor_summary.json
[2026-01-11 09:46:20] -rw------- 1 boinc boinc        95 Jan 11 09:45 pilot_heartbeat.json
[2026-01-11 09:46:20] -rw------- 1 boinc boinc    472742 Jan 11 09:45 log.47898826._039658.job.log.tgz.1
[2026-01-11 09:46:20] -rw------- 1 boinc boinc      7731 Jan 11 09:45 heartbeat.json
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc      8192 Jan 11 09:45 boinc_mmap_file
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc        28 Jan 11 09:45 wrapper_checkpoint.txt
[2026-01-11 09:46:20] -rw------- 1 boinc boinc      4920 Jan 11 09:46 pilotlog.txt
[2026-01-11 09:46:20] -rw------- 1 boinc boinc   1427745 Jan 11 09:46 log.47898826._039658.job.log.1
[2026-01-11 09:46:20] -rw------- 1 boinc boinc       357 Jan 11 09:46 output.list
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc       620 Jan 11 09:46 runtime_log
[2026-01-11 09:46:20] -rw------- 1 boinc boinc   1914880 Jan 11 09:46 result.tar.gz
[2026-01-11 09:46:20] -rw------- 1 boinc boinc       655 Jan 11 09:46 yqHNDmlFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPPmKDm2wMTRn.diag
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc      9168 Jan 11 09:46 runtime_log.err
[2026-01-11 09:46:20] -rw-rw-r-- 1 boinc boinc     20843 Jan 11 09:46 stderr.txt
[2026-01-11 09:46:20] HITS file was successfully produced:
[2026-01-11 09:46:20] -rw------- 1 boinc boinc 221205954 Jan 11 09:44 shared/HITS.pool.root.1
[2026-01-11 09:46:20]  *** Contents of shared directory: ***
[2026-01-11 09:46:20] total 439116
[2026-01-11 09:46:20] -rw-r--r-- 2 boinc boinc 225910099 Jan 11 06:51 ATLAS.root_0
[2026-01-11 09:46:20] -rw-r--r-- 2 boinc boinc     15847 Jan 11 06:51 start_atlas.sh
[2026-01-11 09:46:20] -rw-r--r-- 2 boinc boinc    592403 Jan 11 06:51 input.tar.gz
[2026-01-11 09:46:20] -rw------- 1 boinc boinc 221205954 Jan 11 09:44 HITS.pool.root.1
[2026-01-11 09:46:20] -rw------- 1 boinc boinc   1914880 Jan 11 09:46 result.tar.gz
09:46:21 (1485088): run_atlas exited; CPU time 63559.515779
09:46:21 (1485088): called boinc_finish(0)

</stderr_txt>
]]>

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