Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
07:12:17 (1560967): wrapper (7.7.26015): starting
07:12:17 (1560967): wrapper: running run_atlas (--nthreads 12)
[2026-01-11 07:12:17] Arguments: --nthreads 12
[2026-01-11 07:12:17] Threads: 12
[2026-01-11 07:12:17] Checking for CVMFS
[2026-01-11 07:12:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-11 07:12:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-11 07:12:17] Running cvmfs_config stat atlas.cern.ch
[2026-01-11 07:12:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-11 07:12:18] 2.13.3.0 40677 2960 55968 155008 3 228 3223481 4096000 10501 130560 0 16146884 99.967 324056 280 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2026-01-11 07:12:18] CVMFS is ok
[2026-01-11 07:12:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-11 07:12:18] Checking for apptainer binary...
[2026-01-11 07:12:18] apptainer is not installed, using version from CVMFS
[2026-01-11 07:12:18] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-11 07:12:20] epyc7v12
[2026-01-11 07:12:20] apptainer works
[2026-01-11 07:12:20] Set ATHENA_PROC_NUMBER=12
[2026-01-11 07:12:20] Set ATHENA_CORE_NUMBER=12
[2026-01-11 07:12:20] Starting ATLAS job with PandaID=6963191961
[2026-01-11 07:12:20] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31417/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-11 10:05:19]  *** The last 200 lines of the pilot log: ***
[2026-01-11 10:05:19] 2026-01-11 10:04:11,619 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-11 10:05:19] 2026-01-11 10:04:11,619 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-11 10:05:19] 2026-01-11 10:04:11,624 | INFO     | fitting pss+swap vs Time
[2026-01-11 10:05:19] 2026-01-11 10:04:11,624 | INFO     | sum of square deviations: 1444149868.0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,628 | INFO     | sum of deviations: 52053240898.00001
[2026-01-11 10:05:19] 2026-01-11 10:04:11,629 | INFO     | mean x: 1768120712.0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,629 | INFO     | mean y: 2618584.736526946
[2026-01-11 10:05:19] 2026-01-11 10:04:11,629 | INFO     | intersect: -63727895399.89606
[2026-01-11 10:05:19] 2026-01-11 10:04:11,629 | INFO     | chi2: 2.3441335120149716
[2026-01-11 10:05:19] 2026-01-11 10:04:11,629 | INFO     | sum of square deviations: 1318277740.5
[2026-01-11 10:05:19] 2026-01-11 10:04:11,630 | INFO     | sum of deviations: 50298527006.50001
[2026-01-11 10:05:19] 2026-01-11 10:04:11,631 | INFO     | mean x: 1768120559.5
[2026-01-11 10:05:19] 2026-01-11 10:04:11,631 | INFO     | mean y: 2616458.574074074
[2026-01-11 10:05:19] 2026-01-11 10:04:11,631 | INFO     | intersect: -67459540399.98563
[2026-01-11 10:05:19] 2026-01-11 10:04:11,634 | INFO     | chi2: 2.3440972878897375
[2026-01-11 10:05:19] 2026-01-11 10:04:11,634 | INFO     | current chi2=2.3440972878897375 (change=0.0015453098148380177 %)
[2026-01-11 10:05:19] 2026-01-11 10:04:11,634 | INFO     | right removable region: 161
[2026-01-11 10:05:19] 2026-01-11 10:04:11,635 | INFO     | sum of square deviations: 1318277740.5
[2026-01-11 10:05:19] 2026-01-11 10:04:11,637 | INFO     | sum of deviations: 12922686702.999998
[2026-01-11 10:05:19] 2026-01-11 10:04:11,637 | INFO     | mean x: 1768120864.5
[2026-01-11 10:05:19] 2026-01-11 10:04:11,637 | INFO     | mean y: 2665668.1975308643
[2026-01-11 10:05:19] 2026-01-11 10:04:11,637 | INFO     | intersect: -17329700101.935875
[2026-01-11 10:05:19] 2026-01-11 10:04:11,637 | INFO     | chi2: 0.23821136433805615
[2026-01-11 10:05:19] 2026-01-11 10:04:11,637 | INFO     | current chi2=0.23821136433805615 (change=89.83797795146512 %)
[2026-01-11 10:05:19] 2026-01-11 10:04:11,638 | INFO     | sum of square deviations: 1199940638.0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,640 | INFO     | sum of deviations: 15691578.99999971
[2026-01-11 10:05:19] 2026-01-11 10:04:11,641 | INFO     | mean x: 1768121017.0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,641 | INFO     | mean y: 2682271.388535032
[2026-01-11 10:05:19] 2026-01-11 10:04:11,641 | INFO     | intersect: -20439381.25093106
[2026-01-11 10:05:19] 2026-01-11 10:04:11,641 | INFO     | chi2: 0.045001878790023875
[2026-01-11 10:05:19] 2026-01-11 10:04:11,641 | INFO     | current chi2=0.045001878790023875 (change=81.10842490026641 %)
[2026-01-11 10:05:19] 2026-01-11 10:04:11,641 | INFO     | sum of square deviations: 1088905998.0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,645 | INFO     | sum of deviations: -3924670795.5
[2026-01-11 10:05:19] 2026-01-11 10:04:11,646 | INFO     | mean x: 1768121169.5
[2026-01-11 10:05:19] 2026-01-11 10:04:11,646 | INFO     | mean y: 2687596.361842105
[2026-01-11 10:05:19] 2026-01-11 10:04:11,646 | INFO     | intersect: 6375408042.008571
[2026-01-11 10:05:19] 2026-01-11 10:04:11,646 | INFO     | chi2: 0.003586136262949172
[2026-01-11 10:05:19] 2026-01-11 10:04:11,646 | INFO     | current chi2=0.003586136262949172 (change=92.03114101150783 %)
[2026-01-11 10:05:19] 2026-01-11 10:04:11,646 | INFO     | sum of square deviations: 984941258.0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,647 | INFO     | sum of deviations: -4008870406.9999995
[2026-01-11 10:05:19] 2026-01-11 10:04:11,647 | INFO     | mean x: 1768121322.0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,647 | INFO     | mean y: 2687712.476190476
[2026-01-11 10:05:19] 2026-01-11 10:04:11,648 | INFO     | intersect: 7199227796.647907
[2026-01-11 10:05:19] 2026-01-11 10:04:11,648 | INFO     | chi2: 0.003166175759992448
[2026-01-11 10:05:19] 2026-01-11 10:04:11,650 | INFO     | current chi2=0.003166175759992448 (change=11.710667753917312 %)
[2026-01-11 10:05:19] 2026-01-11 10:04:11,650 | INFO     | left removable region: 40
[2026-01-11 10:05:19] 2026-01-11 10:04:11,650 | INFO     | sum of square deviations: 549294020.0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,653 | INFO     | sum of deviations: -1420782354.0000005
[2026-01-11 10:05:19] 2026-01-11 10:04:11,653 | INFO     | mean x: 1768121749.0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,653 | INFO     | mean y: 2682691.752066116
[2026-01-11 10:05:19] 2026-01-11 10:04:11,653 | INFO     | intersect: 4576037014.274671
[2026-01-11 10:05:19] 2026-01-11 10:04:11,654 | INFO     | chi2: 0.0017934648693885005
[2026-01-11 10:05:19] 2026-01-11 10:04:11,654 | INFO     | current memory leak: -2.59 B/s (using 121 data points, chi2=0.00)
[2026-01-11 10:05:19] 2026-01-11 10:04:11,654 | INFO     | could have reported an average CPU frequency of 2513 MHz (9 samples)
[2026-01-11 10:05:19] 2026-01-11 10:04:11,655 | INFO     | ..............................
[2026-01-11 10:05:19] 2026-01-11 10:04:11,655 | INFO     | . Timing measurements:
[2026-01-11 10:05:19] 2026-01-11 10:04:11,655 | INFO     | . get job = 0 s
[2026-01-11 10:05:19] 2026-01-11 10:04:11,655 | INFO     | . initial setup = 3 s
[2026-01-11 10:05:19] 2026-01-11 10:04:11,655 | INFO     | . payload setup = 18 s
[2026-01-11 10:05:19] 2026-01-11 10:04:11,655 | INFO     | . stage-in = 0 s
[2026-01-11 10:05:19] 2026-01-11 10:04:11,655 | INFO     | . payload execution = 10195 s
[2026-01-11 10:05:19] 2026-01-11 10:04:11,655 | INFO     | . stage-out = 1 s
[2026-01-11 10:05:19] 2026-01-11 10:04:11,655 | INFO     | . log creation = 0 s
[2026-01-11 10:05:19] 2026-01-11 10:04:11,655 | INFO     | ..............................
[2026-01-11 10:05:19] 2026-01-11 10:04:11,824 | INFO     | 
[2026-01-11 10:05:19] 2026-01-11 10:04:11,824 | INFO     | job summary report
[2026-01-11 10:05:19] 2026-01-11 10:04:11,824 | INFO     | --------------------------------------------------
[2026-01-11 10:05:19] 2026-01-11 10:04:11,824 | INFO     | PanDA job id: 6963191961
[2026-01-11 10:05:19] 2026-01-11 10:04:11,824 | INFO     | task id: 47898826
[2026-01-11 10:05:19] 2026-01-11 10:04:11,824 | INFO     | errors: (none)
[2026-01-11 10:05:19] 2026-01-11 10:04:11,824 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-11 10:05:19] 2026-01-11 10:04:11,824 | INFO     | pilot state: finished 
[2026-01-11 10:05:19] 2026-01-11 10:04:11,824 | INFO     | transexitcode: 0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | exeerrorcode: 0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | exeerrordiag: 
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | exitcode: 0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | exitmsg: OK
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | cpuconsumptiontime: 60866 s
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | nevents: 400
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | neventsw: 0
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | pid: 1572492
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | pgrp: 1572492
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | corecount: 12
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | event service: False
[2026-01-11 10:05:19] 2026-01-11 10:04:11,825 | INFO     | sizes: {0: 2283823, 1: 2284022, 2: 2284050, 13: 2284050, 15: 2284368, 23: 2284396, 10218: 2313549, 10220: 2322593, 10221: 2322649, 10237: 2322907}
[2026-01-11 10:05:19] 2026-01-11 10:04:11,826 | INFO     | --------------------------------------------------
[2026-01-11 10:05:19] 2026-01-11 10:04:11,826 | INFO     | 
[2026-01-11 10:05:19] 2026-01-11 10:04:11,826 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31417/slots/2
[2026-01-11 10:05:19] 2026-01-11 10:04:11,879 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,880 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,880 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,880 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,880 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,880 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,880 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,880 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,880 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,880 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,881 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,881 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,881 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,881 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,885 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-11 10:05:19] 2026-01-11 10:04:11,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,885 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-11 10:05:19] 2026-01-11 10:04:11,886 | INFO     | job 6963191961 has completed (purged errors)
[2026-01-11 10:05:19] 2026-01-11 10:04:11,886 | INFO     | overall cleanup function is called
[2026-01-11 10:05:19] 2026-01-11 10:04:12,930 | INFO     | --- collectZombieJob: --- 10, [1572492]
[2026-01-11 10:05:19] 2026-01-11 10:04:12,930 | INFO     | zombie collector waiting for pid 1572492
[2026-01-11 10:05:19] 2026-01-11 10:04:12,931 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-11 10:05:19] 2026-01-11 10:04:12,931 | INFO     | collected zombie processes
[2026-01-11 10:05:19] 2026-01-11 10:04:12,931 | INFO     | will attempt to kill all subprocesses of pid=1572492
[2026-01-11 10:05:19] 2026-01-11 10:04:14,060 | INFO     | process IDs to be killed: [1572492] (in reverse order)
[2026-01-11 10:05:19] 2026-01-11 10:04:14,511 | WARNING  | found no corresponding commands to process id(s)
[2026-01-11 10:05:19] 2026-01-11 10:04:14,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-11 10:05:19] 2026-01-11 10:04:14,548 | INFO     | did not find any defunct processes belonging to 1572492
[2026-01-11 10:05:19] 2026-01-11 10:04:14,583 | INFO     | did not find any defunct processes belonging to 1572492
[2026-01-11 10:05:19] 2026-01-11 10:04:14,583 | INFO     | ready for new job
[2026-01-11 10:05:19] 2026-01-11 10:04:14,584 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-11 10:05:19] 2026-01-11 10:04:14,591 | INFO     | ***************************************
[2026-01-11 10:05:19] 2026-01-11 10:04:14,591 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-11 10:05:19] 2026-01-11 10:04:14,591 | INFO     | ***************************************
[2026-01-11 10:05:19] 2026-01-11 10:04:14,591 | INFO     | 
[2026-01-11 10:05:19] 2026-01-11 10:04:14,601 | INFO     | architecture information:
[2026-01-11 10:05:19] 2026-01-11 10:04:14,604 | INFO     | executing command: cat /etc/os-release
[2026-01-11 10:05:19] 2026-01-11 10:04:14,649 | INFO     | cat /etc/os-release:
[2026-01-11 10:05:19] NAME="CentOS Linux"
[2026-01-11 10:05:19] VERSION="7 (Core)"
[2026-01-11 10:05:19] ID="centos"
[2026-01-11 10:05:19] ID_LIKE="rhel fedora"
[2026-01-11 10:05:19] VERSION_ID="7"
[2026-01-11 10:05:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-11 10:05:19] ANSI_COLOR="0;31"
[2026-01-11 10:05:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-11 10:05:19] HOME_URL="https://www.centos.org/"
[2026-01-11 10:05:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-11 10:05:19] 
[2026-01-11 10:05:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-11 10:05:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-11 10:05:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-11 10:05:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-11 10:05:19] 
[2026-01-11 10:05:19] 2026-01-11 10:04:14,650 | INFO     | ***************************************
[2026-01-11 10:05:19] 2026-01-11 10:04:15,152 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31417/slots/2
[2026-01-11 10:05:19] 2026-01-11 10:04:15,197 | INFO     | sufficient remaining disk space (371978141696 B)
[2026-01-11 10:05:19] 2026-01-11 10:04:15,197 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-11 10:05:19] 2026-01-11 10:04:15,199 | INFO     | current server update state: UPDATING_FINAL
[2026-01-11 10:05:19] 2026-01-11 10:04:15,199 | INFO     | update_server=False
[2026-01-11 10:05:19] 2026-01-11 10:04:15,199 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-11 10:05:19] 2026-01-11 10:04:15,199 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-11 10:05:19] 2026-01-11 10:04:15,200 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-11 10:05:19] 2026-01-11 10:04:15,248 | INFO     | all data control threads have been joined
[2026-01-11 10:05:19] 2026-01-11 10:04:15,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-11 10:05:19] 2026-01-11 10:04:15,533 | INFO     | aborting loop
[2026-01-11 10:05:19] 2026-01-11 10:04:16,041 | INFO     | all job control threads have been joined
[2026-01-11 10:05:19] 2026-01-11 10:04:16,204 | INFO     | [job] retrieve thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:16,253 | INFO     | [data] control thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:16,336 | INFO     | all payload control threads have been joined
[2026-01-11 10:05:19] 2026-01-11 10:04:16,433 | INFO     | [data] copytool_in thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:16,539 | INFO     | [job] job monitor thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:16,746 | INFO     | [payload] validate_pre thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:16,836 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-11 10:05:19] 2026-01-11 10:04:16,920 | INFO     | [payload] failed_post thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:17,049 | INFO     | [job] control thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:17,207 | INFO     | [data] copytool_out thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:17,294 | INFO     | [job] create_data_payload thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:17,341 | INFO     | [payload] control thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:17,537 | INFO     | [job] validate thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:17,603 | INFO     | [payload] execute_payloads thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:17,789 | INFO     | [payload] validate_post thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:17,843 | INFO     | [job] queue monitor thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:19,205 | INFO     | [data] queue_monitor thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:25,500 | INFO     | job.realtimelogging is not enabled
[2026-01-11 10:05:19] 2026-01-11 10:04:26,508 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-11 10:05:19] 2026-01-11 10:04:44,726 | INFO     | PID=1565183 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-11 10:05:19] 2026-01-11 10:04:44,726 | INFO     | .. there are 12 such processes running
[2026-01-11 10:05:19] 2026-01-11 10:04:44,728 | INFO     | found 0 job(s) in 20 queues
[2026-01-11 10:05:19] 2026-01-11 10:04:44,728 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-11 10:05:19] 2026-01-11 10:04:44,730 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-11 10:05:19] 2026-01-11 10:05:12,328 | INFO     | [monitor] cgroup control has ended
[2026-01-11 10:05:19] 2026-01-11 10:05:12,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 132139076659008)>', '<ExcThread(monitor, started 132138544387840)>']
[2026-01-11 10:05:19] 2026-01-11 10:05:12,897 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-11 10:05:19] 2026-01-11 10:05:12,897 | INFO     | [monitor] control thread has ended
[2026-01-11 10:05:19] 2026-01-11 10:05:17,897 | INFO     | all workflow threads have been joined
[2026-01-11 10:05:19] 2026-01-11 10:05:17,897 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-11 10:05:19] 2026-01-11 10:05:17,898 | INFO     | traces error code: 0
[2026-01-11 10:05:19] 2026-01-11 10:05:17,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-11 10:05:19] 2026-01-11 10:05:18,527 [wrapper] ==== pilot stdout END ====
[2026-01-11 10:05:19] 2026-01-11 10:05:18,551 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-11 10:05:19] 2026-01-11 10:05:18,562 [wrapper] pilotpid: 1565183
[2026-01-11 10:05:19] 2026-01-11 10:05:18,569 [wrapper] Pilot exit status: 0
[2026-01-11 10:05:19] 2026-01-11 10:05:18,613 [wrapper] pandaids: 6963191961
[2026-01-11 10:05:19] 2026-01-11 10:05:18,811 [wrapper] cleanup supervisor_pilot 1839651 1565184
[2026-01-11 10:05:19] 2026-01-11 10:05:18,822 [wrapper] Test setup, not cleaning
[2026-01-11 10:05:19] 2026-01-11 10:05:18,839 [wrapper] apfmon messages muted
[2026-01-11 10:05:19] 2026-01-11 10:05:18,855 [wrapper] ==== wrapper stdout END ====
[2026-01-11 10:05:19] 2026-01-11 10:05:18,865 [wrapper] ==== wrapper stderr END ====
[2026-01-11 10:05:19]  *** Error codes and diagnostics ***
[2026-01-11 10:05:19]     "exeErrorCode": 0,
[2026-01-11 10:05:19]     "exeErrorDiag": "",
[2026-01-11 10:05:19]     "pilotErrorCode": 0,
[2026-01-11 10:05:19]     "pilotErrorDiag": "",
[2026-01-11 10:05:19]  *** Listing of results directory ***
[2026-01-11 10:05:19] total 439668
[2026-01-11 10:05:19] -rw-r--r-- 1 boinc boinc    579449 Jan  9 04:21 pilot3.tar.gz
[2026-01-11 10:05:19] -rwx------ 1 boinc boinc     36322 Jan  9 04:25 runpilot2-wrapper.sh
[2026-01-11 10:05:19] -rw-r--r-- 1 boinc boinc      5112 Jan  9 04:30 queuedata.json
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc       100 Jan 11 07:12 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-11 10:05:19] -rwxr-xr-x 1 boinc boinc      7986 Jan 11 07:12 run_atlas
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc       105 Jan 11 07:12 job.xml
[2026-01-11 10:05:19] -rw-r--r-- 2 boinc boinc 222704907 Jan 11 07:12 EVNT.47898824._001492.pool.root.1
[2026-01-11 10:05:19] -rw-r--r-- 2 boinc boinc     15847 Jan 11 07:12 start_atlas.sh
[2026-01-11 10:05:19] drwxrwx--x 2 boinc boinc      4096 Jan 11 07:12 shared
[2026-01-11 10:05:19] -rw-r--r-- 2 boinc boinc    592398 Jan 11 07:12 input.tar.gz
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc      7052 Jan 11 07:12 init_data.xml
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc         0 Jan 11 07:12 boinc_setup_complete
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc         0 Jan 11 07:12 boinc_lockfile
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc      2520 Jan 11 07:12 pandaJob.out
[2026-01-11 10:05:19] -rw------- 1 boinc boinc    989548 Jan 11 07:12 agis_schedconf.cvmfs.json
[2026-01-11 10:05:19] -rw------- 1 boinc boinc   1516240 Jan 11 07:12 agis_ddmendpoints.agis.ALL.json
[2026-01-11 10:05:19] drwx------ 5 boinc boinc      4096 Jan 11 07:12 pilot3
[2026-01-11 10:05:19] -rw------- 1 boinc boinc 219869364 Jan 11 10:02 HITS.47898826._038829.pool.root.1
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc       531 Jan 11 10:03 boinc_task_state.xml
[2026-01-11 10:05:19] -rw------- 1 boinc boinc      1023 Jan 11 10:03 memory_monitor_summary.json
[2026-01-11 10:05:19] -rw------- 1 boinc boinc    454809 Jan 11 10:03 log.47898826._038829.job.log.tgz.1
[2026-01-11 10:05:19] -rw------- 1 boinc boinc      7734 Jan 11 10:04 heartbeat.json
[2026-01-11 10:05:19] -rw------- 1 boinc boinc        95 Jan 11 10:04 pilot_heartbeat.json
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc      8192 Jan 11 10:04 boinc_mmap_file
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc        28 Jan 11 10:04 wrapper_checkpoint.txt
[2026-01-11 10:05:19] -rw------- 1 boinc boinc      4920 Jan 11 10:05 pilotlog.txt
[2026-01-11 10:05:19] -rw------- 1 boinc boinc   1406556 Jan 11 10:05 log.47898826._038829.job.log.1
[2026-01-11 10:05:19] -rw------- 1 boinc boinc       357 Jan 11 10:05 output.list
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc       620 Jan 11 10:05 runtime_log
[2026-01-11 10:05:19] -rw------- 1 boinc boinc   1884160 Jan 11 10:05 result.tar.gz
[2026-01-11 10:05:19] -rw------- 1 boinc boinc       655 Jan 11 10:05 IEDODmYFJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmyBhKDmo5QCmm.diag
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc      9168 Jan 11 10:05 runtime_log.err
[2026-01-11 10:05:19] -rw-rw-r-- 1 boinc boinc     20729 Jan 11 10:05 stderr.txt
[2026-01-11 10:05:19] HITS file was successfully produced:
[2026-01-11 10:05:19] -rw------- 1 boinc boinc 219869364 Jan 11 10:02 shared/HITS.pool.root.1
[2026-01-11 10:05:19]  *** Contents of shared directory: ***
[2026-01-11 10:05:19] total 434652
[2026-01-11 10:05:19] -rw-r--r-- 2 boinc boinc 222704907 Jan 11 07:12 ATLAS.root_0
[2026-01-11 10:05:19] -rw-r--r-- 2 boinc boinc     15847 Jan 11 07:12 start_atlas.sh
[2026-01-11 10:05:19] -rw-r--r-- 2 boinc boinc    592398 Jan 11 07:12 input.tar.gz
[2026-01-11 10:05:19] -rw------- 1 boinc boinc 219869364 Jan 11 10:02 HITS.pool.root.1
[2026-01-11 10:05:19] -rw------- 1 boinc boinc   1884160 Jan 11 10:05 result.tar.gz
10:05:20 (1560967): run_atlas exited; CPU time 61396.543247
10:05:20 (1560967): called boinc_finish(0)

</stderr_txt>
]]>

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