Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-10 07:03:36 (21388): vboxwrapper version 26210
2026-01-10 07:03:36 (21388): BOINC client version: 8.2.8
2026-01-10 07:03:38 (21388): Detected: VirtualBox VboxManage Interface (Version: 6.1.2)
2026-01-10 07:03:38 (21388): Successfully copied 'init_data.xml' to the shared directory.
2026-01-10 07:03:38 (21388): Create VM. (boinc_b2b460129841e4ff, slot#5)
2026-01-10 07:03:39 (21388): Setting Memory Size for VM. (4400MB)
2026-01-10 07:03:39 (21388): Setting CPU Count for VM. (4)
2026-01-10 07:03:39 (21388): Setting Chipset Options for VM.
2026-01-10 07:03:40 (21388): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-10 07:03:40 (21388): Setting Boot Options for VM.
2026-01-10 07:03:41 (21388): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-10 07:03:41 (21388): Enabling VM Network Access.
2026-01-10 07:03:41 (21388): Disabling USB Support for VM.
2026-01-10 07:03:42 (21388): Disabling COM Port Support for VM.
2026-01-10 07:03:42 (21388): Disabling LPT Port Support for VM.
2026-01-10 07:03:42 (21388): Disabling Audio Support for VM.
2026-01-10 07:03:42 (21388): Disabling Clipboard Support for VM.
2026-01-10 07:03:43 (21388): Disabling Drag and Drop Support for VM.
2026-01-10 07:03:43 (21388): Adding storage controller(s) to VM.
2026-01-10 07:03:44 (21388): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-10 07:03:45 (21388): Adding VirtualBox Guest Additions to VM.
2026-01-10 07:03:45 (21388): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-10 07:03:45 (21388): forwarding host port 49865 to guest port 80
2026-01-10 07:03:46 (21388): Enabling remote desktop for VM.
2026-01-10 07:03:46 (21388): Required extension pack not installed, remote desktop not enabled.
2026-01-10 07:03:46 (21388): Enabling shared directory for VM.
2026-01-10 07:03:46 (21388): Starting VM using VBoxManage interface. (boinc_b2b460129841e4ff, slot#5)
2026-01-10 07:03:51 (21388): Successfully started VM. (PID = '21944')
2026-01-10 07:03:51 (21388): Reporting VM Process ID to BOINC.
2026-01-10 07:03:51 (21388): Guest Log: BIOS: VirtualBox 6.1.2
2026-01-10 07:03:51 (21388): Guest Log: CPUID EDX: 0x178bfbff
2026-01-10 07:03:51 (21388): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-10 07:03:51 (21388): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-10 07:03:51 (21388): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-10 07:03:51 (21388): Detected: Web Application Enabled (http://localhost:49865)
2026-01-10 07:03:51 (21388): Preference change detected
2026-01-10 07:03:51 (21388): Setting CPU throttle for VM. (90%)
2026-01-10 07:03:51 (21388): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-10 07:03:53 (21388): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-10 07:03:53 (21388): Guest Log: BIOS: Booting from Hard Disk...
2026-01-10 07:03:56 (21388): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-10 07:03:56 (21388): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-10 07:03:56 (21388): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-10 07:04:08 (21388): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-10 07:04:08 (21388): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2026-01-10 07:04:25 (21388): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-10 07:04:25 (21388): Guest Log: 00:00:00.000158 main     Log opened 2026-01-10T07:04:23.688928000Z
2026-01-10 07:04:25 (21388): Guest Log: 00:00:00.000271 main     OS Product: Linux
2026-01-10 07:04:25 (21388): Guest Log: 00:00:00.000304 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-10 07:04:25 (21388): Guest Log: 00:00:00.000329 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-10 07:04:25 (21388): Guest Log: 00:00:00.000353 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-10 07:04:25 (21388): Guest Log: 00:00:00.000354 main     Process ID: 1303
2026-01-10 07:04:25 (21388): Guest Log: 00:00:00.000354 main     Package type: LINUX_64BITS_GENERIC
2026-01-10 07:04:25 (21388): Guest Log: 00:00:00.002180 main     5.2.32 r132073 started. Verbose level = 0
2026-01-10 07:04:26 (21388): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-10 07:04:26 (21388): Guest Log: [INFO] Mounting shared directory
2026-01-10 07:04:26 (21388): Guest Log: [INFO] Checking for init_data.xml
2026-01-10 07:04:35 (21388): Guest Log: 00:00:10.006951 timesync vgsvcTimeSyncWorker: Radical guest time change: -37 788 452 859 000ns (GuestNow=1 767 990 875 240 915 000 ns GuestLast=1 768 028 663 693 774 000 ns fSetTimeLastLoop=true )
2026-01-10 07:04:41 (21388): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-10 07:04:41 (21388): Guest Log: [INFO] Detected branch: prod
2026-01-10 07:04:42 (21388): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-10 07:04:42 (21388): Guest Log: Copying input files
2026-01-10 07:04:43 (21388): Guest Log: Copied input files into RunAtlas.
2026-01-10 07:04:43 (21388): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-10 07:04:43 (21388): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-10 07:04:43 (21388): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-10 07:04:43 (21388): Guest Log: Further information can be found at the LHC@home message board.
2026-01-10 07:04:55 (21388): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-10 07:04:56 (21388): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-10 07:04:56 (21388): Guest Log: 2.6.3.0 1582 0 30156 154956 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1bnl-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2026-01-10 07:04:58 (21388): Guest Log: copied the webapp to /var/www
2026-01-10 07:04:58 (21388): Guest Log: ATHENA_PROC_NUMBER=4
2026-01-10 07:04:58 (21388): Guest Log: ATHENA_CORE_NUMBER=4
2026-01-10 07:04:59 (21388): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-10 07:04:59 (21388): Guest Log:  *** Starting ATLAS job. (PandaID=6963193672 taskID=47898826) ***
2026-01-10 08:43:57 (21388): Status Report: Elapsed Time: '6000.000000'
2026-01-10 08:43:57 (21388): Status Report: CPU Time: '17448.687500'
2026-01-10 10:24:01 (21388): Status Report: Elapsed Time: '12000.000000'
2026-01-10 10:24:01 (21388): Status Report: CPU Time: '39066.500000'
2026-01-10 11:55:06 (21388): Guest Log:  *** Job finished ***
2026-01-10 11:55:06 (21388): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:02,893 | INFO     | all workflow threads have been joined
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:02,893 | INFO     | end of generic workflow (traces error code: 0)
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:02,893 | INFO     | traces error code: 0
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:02,893 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:02,914 | INFO     | PID=6001 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:02,915 | INFO     | found 0 job(s) in 20 queues
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:02,915 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:02,915 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:02,915 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:02,915 | INFO     | [monitor] control thread has ended
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:03,055 [wrapper] ==== pilot stdout END ====
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:03,060 [wrapper] ==== wrapper stdout RESUME ====
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:03,064 [wrapper] pilotpid: 6001
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:03,070 [wrapper] Pilot exit status: 0
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:03,530 [wrapper] pandaids: 6963193672
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:03,559 [wrapper] cleanup supervisor_pilot 16285 6002
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:03,564 [wrapper] Test setup, not cleaning
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:03,570 [wrapper] apfmon messages muted
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:03,576 [wrapper] ==== wrapper stdout END ====
2026-01-10 11:55:06 (21388): Guest Log: 2026-01-10 01:25:03,580 [wrapper] ==== wrapper stderr END ====
2026-01-10 11:55:06 (21388): Guest Log:  *** Error codes and diagnostics ***
2026-01-10 11:55:06 (21388): Guest Log:     "exeErrorCode": 0,
2026-01-10 11:55:06 (21388): Guest Log:     "exeErrorDiag": "",
2026-01-10 11:55:06 (21388): Guest Log:     "pilotErrorCode": 0,
2026-01-10 11:55:06 (21388): Guest Log:     "pilotErrorDiag": "",
2026-01-10 11:55:06 (21388): Guest Log:  *** Listing of results directory ***
2026-01-10 11:55:06 (21388): Guest Log: total 230472
2026-01-10 11:55:06 (21388): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Jan  9 04:21 pilot3.tar.gz
2026-01-10 11:55:06 (21388): Guest Log: -rwx------. 1 atlas atlas     36322 Jan  9 04:25 runpilot2-wrapper.sh
2026-01-10 11:55:06 (21388): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jan  9 04:30 queuedata.json
2026-01-10 11:55:06 (21388): Guest Log: -rwxr-xr-x. 1 atlas atlas      5899 Jan  9 20:34 init_data.xml
2026-01-10 11:55:06 (21388): Guest Log: -rwxr-xr-x. 1 atlas atlas    592395 Jan  9 20:34 input.tar.gz
2026-01-10 11:55:06 (21388): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Jan  9 20:34 start_atlas.sh
2026-01-10 11:55:06 (21388): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan  9 20:34 EVNT.47898824._001504.pool.root.1 -> /data/./ATLAS.root_0
2026-01-10 11:55:06 (21388): Guest Log: -rw-r--r--. 1 atlas atlas      2520 Jan  9 20:34 pandaJob.out
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas    989381 Jan  9 20:38 agis_schedconf.cvmfs.json
2026-01-10 11:55:06 (21388): Guest Log: drwx------. 5 atlas atlas      4096 Jan  9 20:38 pilot3
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas 226772053 Jan 10 01:23 HITS.47898826._039145.pool.root.1
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas        95 Jan 10 01:24 pilot_heartbeat.json
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas      1032 Jan 10 01:24 memory_monitor_summary.json
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas   1516240 Jan 10 01:24 agis_ddmendpoints.agis.ALL.json
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas    441592 Jan 10 01:24 log.47898826._039145.job.log.tgz.1
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas      7827 Jan 10 01:24 heartbeat.json
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas       744 Jan 10 01:25 pilotlog.txt
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas   2257415 Jan 10 01:25 log.47898826._039145.job.log.1
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas       357 Jan 10 01:25 output.list
2026-01-10 11:55:06 (21388): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 10 01:25 runtime_log
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas   2713600 Jan 10 01:25 result.tar.gz
2026-01-10 11:55:06 (21388): Guest Log: -rw-r--r--. 1 atlas atlas      8780 Jan 10 01:25 runtime_log.err
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas       668 Jan 10 01:25 rAfLDmZFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyNmKDmsDhlan.diag
2026-01-10 11:55:06 (21388): Guest Log: Looking for outputfile HITS.47898826._039145.pool.root.1
2026-01-10 11:55:06 (21388): Guest Log: HITS file was successfully produced
2026-01-10 11:55:06 (21388): Guest Log: -rw-------. 1 atlas atlas 226772053 Jan 10 01:23 /home/atlas/RunAtlas/HITS.47898826._039145.pool.root.1
2026-01-10 11:55:07 (21388): Guest Log: Successfully finished the ATLAS job!
2026-01-10 11:55:07 (21388): Guest Log: Copying the results back to the shared directory!
2026-01-10 11:55:07 (21388): Guest Log:  *** Contents of shared directory: ***
2026-01-10 11:55:07 (21388): Guest Log: total 443808
2026-01-10 11:55:07 (21388): Guest Log: -rwxrwxrwx. 1 root root 224347687 Jan  9 20:33 ATLAS.root_0
2026-01-10 11:55:07 (21388): Guest Log: -rwxrwxrwx. 1 root root 226772053 Jan 10 01:25 HITS.pool.root.1
2026-01-10 11:55:07 (21388): Guest Log: -rwxrwxrwx. 1 root root      5899 Jan  9 20:33 init_data.xml
2026-01-10 11:55:07 (21388): Guest Log: -rwxrwxrwx. 1 root root    592395 Jan  9 20:33 input.tar.gz
2026-01-10 11:55:07 (21388): Guest Log: -rwxrwxrwx. 1 root root   2713600 Jan 10 01:25 result.tar.gz
2026-01-10 11:55:07 (21388): Guest Log: -rwxrwxrwx. 1 root root     15847 Jan  9 20:33 start_atlas.sh
2026-01-10 11:55:07 (21388): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-10 11:55:07 (21388): VM Completion File Detected.
2026-01-10 11:55:07 (21388): Powering off VM.
2026-01-10 11:55:08 (21388): Successfully stopped VM.
2026-01-10 11:55:08 (21388): Deregistering VM. (boinc_b2b460129841e4ff, slot#5)
2026-01-10 11:55:08 (21388): Removing network bandwidth throttle group from VM.
2026-01-10 11:55:09 (21388): Removing VM from VirtualBox.
2026-01-10 11:55:14 (21388): called boinc_finish(0)

</stderr_txt>
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