Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
2026-01-11 16:51:16 (12068): vboxwrapper version 26210
2026-01-11 16:51:16 (12068): BOINC client version: 8.2.8
2026-01-11 16:51:17 (12068): Detected: VirtualBox VboxManage Interface (Version: 6.1.2)
2026-01-11 16:51:17 (12068): Successfully copied 'init_data.xml' to the shared directory.
2026-01-11 16:51:18 (12068): Create VM. (boinc_31fb97f03b0181ff, slot#1)
2026-01-11 16:51:18 (12068): Setting Memory Size for VM. (4400MB)
2026-01-11 16:51:18 (12068): Setting CPU Count for VM. (4)
2026-01-11 16:51:19 (12068): Setting Chipset Options for VM.
2026-01-11 16:51:19 (12068): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-01-11 16:51:19 (12068): Setting Boot Options for VM.
2026-01-11 16:51:20 (12068): Setting Network Configuration for NAT. (Driver: virtio)
2026-01-11 16:51:20 (12068): Enabling VM Network Access.
2026-01-11 16:51:20 (12068): Disabling USB Support for VM.
2026-01-11 16:51:21 (12068): Disabling COM Port Support for VM.
2026-01-11 16:51:21 (12068): Disabling LPT Port Support for VM.
2026-01-11 16:51:21 (12068): Disabling Audio Support for VM.
2026-01-11 16:51:22 (12068): Disabling Clipboard Support for VM.
2026-01-11 16:51:22 (12068): Disabling Drag and Drop Support for VM.
2026-01-11 16:51:23 (12068): Adding storage controller(s) to VM.
2026-01-11 16:51:23 (12068): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-01-11 16:51:24 (12068): Adding VirtualBox Guest Additions to VM.
2026-01-11 16:51:24 (12068): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-01-11 16:51:25 (12068): forwarding host port 53469 to guest port 80
2026-01-11 16:51:25 (12068): Enabling remote desktop for VM.
2026-01-11 16:51:25 (12068): Required extension pack not installed, remote desktop not enabled.
2026-01-11 16:51:25 (12068): Enabling shared directory for VM.
2026-01-11 16:51:26 (12068): Starting VM using VBoxManage interface. (boinc_31fb97f03b0181ff, slot#1)
2026-01-11 16:51:30 (12068): Successfully started VM. (PID = '3020')
2026-01-11 16:51:30 (12068): Reporting VM Process ID to BOINC.
2026-01-11 16:51:30 (12068): Guest Log: BIOS: VirtualBox 6.1.2
2026-01-11 16:51:30 (12068): Guest Log: CPUID EDX: 0x178bfbff
2026-01-11 16:51:30 (12068): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-01-11 16:51:30 (12068): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-01-11 16:51:30 (12068): VM state change detected. (old = 'poweredoff', new = 'running')
2026-01-11 16:51:30 (12068): Detected: Web Application Enabled (http://localhost:53469)
2026-01-11 16:51:30 (12068): Preference change detected
2026-01-11 16:51:30 (12068): Setting CPU throttle for VM. (90%)
2026-01-11 16:51:30 (12068): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 600 seconds) or (Vbox_job.xml: 900 seconds))
2026-01-11 16:51:32 (12068): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-01-11 16:51:32 (12068): Guest Log: BIOS: Booting from Hard Disk...
2026-01-11 16:51:35 (12068): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-01-11 16:51:35 (12068): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-01-11 16:51:35 (12068): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-01-11 16:51:49 (12068): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-01-11 16:51:49 (12068): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2026-01-11 16:51:59 (12068): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-01-11 16:51:59 (12068): Guest Log: 00:00:00.000149 main     Log opened 2026-01-11T16:51:57.909234000Z
2026-01-11 16:51:59 (12068): Guest Log: 00:00:00.000237 main     OS Product: Linux
2026-01-11 16:51:59 (12068): Guest Log: 00:00:00.000267 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-01-11 16:51:59 (12068): Guest Log: 00:00:00.000304 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-01-11 16:51:59 (12068): Guest Log: 00:00:00.000330 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-01-11 16:51:59 (12068): Guest Log: 00:00:00.000331 main     Process ID: 1306
2026-01-11 16:51:59 (12068): Guest Log: 00:00:00.000331 main     Package type: LINUX_64BITS_GENERIC
2026-01-11 16:51:59 (12068): Guest Log: 00:00:00.001012 main     5.2.32 r132073 started. Verbose level = 0
2026-01-11 16:51:59 (12068): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-01-11 16:51:59 (12068): Guest Log: [INFO] Mounting shared directory
2026-01-11 16:51:59 (12068): Guest Log: [INFO] Checking for init_data.xml
2026-01-11 16:52:09 (12068): Guest Log: 00:00:10.061064 timesync vgsvcTimeSyncWorker: Radical guest time change: -37 788 582 943 000ns (GuestNow=1 768 112 529 328 589 000 ns GuestLast=1 768 150 317 911 532 000 ns fSetTimeLastLoop=true )
2026-01-11 16:53:00 (12068): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-01-11 16:53:00 (12068): Guest Log: [INFO] Detected branch: prod
2026-01-11 16:53:01 (12068): Guest Log: This is the prod version of the ATLAS job wrapper
2026-01-11 16:53:01 (12068): Guest Log: Copying input files
2026-01-11 16:53:02 (12068): Guest Log: Copied input files into RunAtlas.
2026-01-11 16:53:02 (12068): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-01-11 16:53:02 (12068): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-01-11 16:53:02 (12068): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-01-11 16:53:02 (12068): Guest Log: Further information can be found at the LHC@home message board.
2026-01-11 16:53:16 (12068): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-01-11 16:53:16 (12068): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-01-11 16:53:16 (12068): Guest Log: 2.6.3.0 1603 0 32160 155007 4 1 3117737 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-01-11 16:53:18 (12068): Guest Log: copied the webapp to /var/www
2026-01-11 16:53:18 (12068): Guest Log: ATHENA_PROC_NUMBER=4
2026-01-11 16:53:18 (12068): Guest Log: ATHENA_CORE_NUMBER=4
2026-01-11 16:53:19 (12068): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-01-11 16:53:19 (12068): Guest Log:  *** Starting ATLAS job. (PandaID=6963194405 taskID=47898826) ***
2026-01-11 17:51:40 (12068): VM state change detected. (old = 'running', new = 'paused')
2026-01-11 21:02:49 (12068): VM state change detected. (old = 'paused', new = 'running')
2026-01-11 21:02:50 (12068): Guest Log: 00:59:41.628230 timesync vgsvcTimeSyncWorker: Radical host time change: 11 478 680 000 000ns (HostNow=1 768 127 569 575 000 000 ns HostLast=1 768 116 090 895 000 000 ns)
2026-01-11 21:02:59 (12068): Guest Log: 00:59:51.643598 timesync vgsvcTimeSyncWorker: Radical guest time change: 11 478 694 967 000ns (GuestNow=1 768 127 579 590 437 000 ns GuestLast=1 768 116 100 895 470 000 ns fSetTimeLastLoop=true )
2026-01-11 21:42:44 (12068): Status Report: Elapsed Time: '6000.000000'
2026-01-11 21:42:44 (12068): Status Report: CPU Time: '17112.578125'
2026-01-11 22:03:21 (12068): VM state change detected. (old = 'running', new = 'paused')
2026-01-12 01:04:33 (12068): Guest Log: 02:00:12.966107 timesync vgsvcTimeSyncWorker: Radical host time change: 10 881 478 000 000ns (HostNow=1 768 142 072 382 000 000 ns HostLast=1 768 131 190 904 000 000 ns)
2026-01-12 01:04:33 (12068): VM state change detected. (old = 'paused', new = 'running')
2026-01-12 01:04:43 (12068): Guest Log: 02:00:22.986911 timesync vgsvcTimeSyncWorker: Radical guest time change: 10 881 490 206 000ns (GuestNow=1 768 142 082 402 848 000 ns GuestLast=1 768 131 200 912 642 000 ns fSetTimeLastLoop=true )
2026-01-12 02:24:06 (12068): Status Report: Elapsed Time: '12000.000000'
2026-01-12 02:24:06 (12068): Status Report: CPU Time: '38748.140625'
2026-01-12 03:59:05 (12068): Guest Log:  *** Job finished ***
2026-01-12 03:59:05 (12068): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:28:43,064 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:28:43,064 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:28:56,075 | INFO     | [monitor] cgroup control has ended
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:28:57,062 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140600430397248)>', '<ExcThread(monitor, started 140599764178688)>']
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:28:57,236 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:28:57,236 | INFO     | [monitor] control thread has ended
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,069 | INFO     | all workflow threads have been joined
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,069 | INFO     | end of generic workflow (traces error code: 0)
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,069 | INFO     | traces error code: 0
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,069 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,200 [wrapper] ==== pilot stdout END ====
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,205 [wrapper] ==== wrapper stdout RESUME ====
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,209 [wrapper] pilotpid: 6030
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,213 [wrapper] Pilot exit status: 0
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,828 [wrapper] pandaids: 6963194405
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,858 [wrapper] cleanup supervisor_pilot 16416 6031
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,863 [wrapper] Test setup, not cleaning
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,868 [wrapper] apfmon messages muted
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,871 [wrapper] ==== wrapper stdout END ====
2026-01-12 03:59:05 (12068): Guest Log: 2026-01-11 17:29:02,875 [wrapper] ==== wrapper stderr END ====
2026-01-12 03:59:05 (12068): Guest Log:  *** Error codes and diagnostics ***
2026-01-12 03:59:05 (12068): Guest Log:     "exeErrorCode": 0,
2026-01-12 03:59:05 (12068): Guest Log:     "exeErrorDiag": "",
2026-01-12 03:59:05 (12068): Guest Log:     "pilotErrorCode": 0,
2026-01-12 03:59:05 (12068): Guest Log:     "pilotErrorDiag": "",
2026-01-12 03:59:05 (12068): Guest Log:  *** Listing of results directory ***
2026-01-12 03:59:05 (12068): Guest Log: total 233960
2026-01-12 03:59:05 (12068): Guest Log: -rw-r--r--. 1 atlas atlas    579449 Jan  9 04:21 pilot3.tar.gz
2026-01-12 03:59:05 (12068): Guest Log: -rwx------. 1 atlas atlas     36322 Jan  9 04:26 runpilot2-wrapper.sh
2026-01-12 03:59:05 (12068): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Jan  9 04:30 queuedata.json
2026-01-12 03:59:05 (12068): Guest Log: -rwxr-xr-x. 1 atlas atlas      5899 Jan 11 06:23 init_data.xml
2026-01-12 03:59:05 (12068): Guest Log: -rwxr-xr-x. 1 atlas atlas    592403 Jan 11 06:23 input.tar.gz
2026-01-12 03:59:05 (12068): Guest Log: -rwxr-xr-x. 1 atlas atlas     15847 Jan 11 06:23 start_atlas.sh
2026-01-12 03:59:05 (12068): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Jan 11 06:23 EVNT.47898824._001517.pool.root.1 -> /data/./ATLAS.root_0
2026-01-12 03:59:05 (12068): Guest Log: -rw-r--r--. 1 atlas atlas      2520 Jan 11 06:23 pandaJob.out
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas    989548 Jan 11 06:26 agis_schedconf.cvmfs.json
2026-01-12 03:59:05 (12068): Guest Log: drwx------. 5 atlas atlas      4096 Jan 11 06:27 pilot3
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas 230240566 Jan 11 17:27 HITS.47898826._039468.pool.root.1
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas      1033 Jan 11 17:27 memory_monitor_summary.json
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas   1516240 Jan 11 17:28 agis_ddmendpoints.agis.ALL.json
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas    448554 Jan 11 17:28 log.47898826._039468.job.log.tgz.1
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas      7824 Jan 11 17:28 heartbeat.json
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas        98 Jan 11 17:28 pilot_heartbeat.json
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas      4805 Jan 11 17:29 pilotlog.txt
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas   2301688 Jan 11 17:29 log.47898826._039468.job.log.1
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas       357 Jan 11 17:29 output.list
2026-01-12 03:59:05 (12068): Guest Log: -rw-r--r--. 1 atlas atlas       620 Jan 11 17:29 runtime_log
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas   2764800 Jan 11 17:29 result.tar.gz
2026-01-12 03:59:05 (12068): Guest Log: -rw-r--r--. 1 atlas atlas      8780 Jan 11 17:29 runtime_log.err
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas       668 Jan 11 17:29 57YMDmlFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmwOmKDmvja4Ln.diag
2026-01-12 03:59:05 (12068): Guest Log: Looking for outputfile HITS.47898826._039468.pool.root.1
2026-01-12 03:59:05 (12068): Guest Log: HITS file was successfully produced
2026-01-12 03:59:05 (12068): Guest Log: -rw-------. 1 atlas atlas 230240566 Jan 11 17:27 /home/atlas/RunAtlas/HITS.47898826._039468.pool.root.1
2026-01-12 03:59:06 (12068): Guest Log: Successfully finished the ATLAS job!
2026-01-12 03:59:06 (12068): Guest Log: Copying the results back to the shared directory!
2026-01-12 03:59:06 (12068): Guest Log:  *** Contents of shared directory: ***
2026-01-12 03:59:06 (12068): Guest Log: total 450820
2026-01-12 03:59:06 (12068): Guest Log: -rwxrwxrwx. 1 root root 228010124 Jan 11 06:21 ATLAS.root_0
2026-01-12 03:59:06 (12068): Guest Log: -rwxrwxrwx. 1 root root 230240566 Jan 11 17:29 HITS.pool.root.1
2026-01-12 03:59:06 (12068): Guest Log: -rwxrwxrwx. 1 root root      5899 Jan 11 06:21 init_data.xml
2026-01-12 03:59:06 (12068): Guest Log: -rwxrwxrwx. 1 root root    592403 Jan  9 20:34 input.tar.gz
2026-01-12 03:59:06 (12068): Guest Log: -rwxrwxrwx. 1 root root   2764800 Jan 11 17:29 result.tar.gz
2026-01-12 03:59:06 (12068): Guest Log: -rwxrwxrwx. 1 root root     15847 Jan  9 20:34 start_atlas.sh
2026-01-12 03:59:06 (12068): Guest Log:  *** Success! Shutting down the machine. ***
2026-01-12 03:59:06 (12068): VM Completion File Detected.
2026-01-12 03:59:06 (12068): Powering off VM.
2026-01-12 03:59:07 (12068): Successfully stopped VM.
2026-01-12 03:59:07 (12068): Deregistering VM. (boinc_31fb97f03b0181ff, slot#1)
2026-01-12 03:59:07 (12068): Removing network bandwidth throttle group from VM.
2026-01-12 03:59:07 (12068): Removing VM from VirtualBox.
2026-01-12 03:59:13 (12068): called boinc_finish(0)

</stderr_txt>
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