Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:14:21 (972900): wrapper (7.7.26015): starting
15:14:21 (972900): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:14:21] Arguments: --nthreads 8
[2026-01-09 15:14:21] Threads: 8
[2026-01-09 15:14:21] Checking for CVMFS
[2026-01-09 15:14:21] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:14:22] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:14:22] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:14:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:14:23] 2.13.3.0 11793 93876 391984 154955 1 362 26365765 32935936 24943 16776704 0 353119010 99.505 463613508 34947 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-01-09 15:14:23] CVMFS is ok
[2026-01-09 15:14:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:14:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:14:23] Further information can be found at the LHC@home message board.
[2026-01-09 15:14:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:14:23] Checking for apptainer binary...
[2026-01-09 15:14:23] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:14:23] Running /usr/bin/apptainer --version
[2026-01-09 15:14:23] apptainer version 1.4.5-2.el9
[2026-01-09 15:14:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:14:24] c6-2-11-2.aglt2.org
[2026-01-09 15:14:24] apptainer works
[2026-01-09 15:14:24] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:14:24] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:14:24] Starting ATLAS job with PandaID=6963189615
[2026-01-09 15:14:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-09 18:28:45]  *** The last 200 lines of the pilot log: ***
[2026-01-09 18:28:45] 2026-01-09 23:27:38,660 | INFO     | time since job start (11539s) is within the limit (349056.0s)
[2026-01-09 18:28:45] 2026-01-09 23:27:39,084 | INFO     | monitor loop #752: job 0:6963189615 is in state 'finished'
[2026-01-09 18:28:45] 2026-01-09 23:27:39,084 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 18:28:45] 2026-01-09 23:27:40,677 | INFO     | time since job start (11541s) is within the limit (349056.0s)
[2026-01-09 18:28:45] 2026-01-09 23:27:41,589 | INFO     | monitor loop #753: job 0:6963189615 is in state 'finished'
[2026-01-09 18:28:45] 2026-01-09 23:27:41,593 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-01-09 18:28:45] 2026-01-09 23:27:42,685 | INFO     | time since job start (11543s) is within the limit (349056.0s)
[2026-01-09 18:28:45] 2026-01-09 23:27:43,078 | INFO     | CPU arch script returned: x86-64-v4
[2026-01-09 18:28:45] 2026-01-09 23:27:43,098 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2719.7368229166655
[2026-01-09 18:28:45] 2026-01-09 23:27:43,134 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6963189615/memory_monitor_summary.json (trf name=prmon)
[2026-01-09 18:28:45] 2026-01-09 23:27:43,136 | INFO     | extracted standard info from prmon json
[2026-01-09 18:28:45] 2026-01-09 23:27:43,136 | INFO     | extracted standard memory fields from prmon json
[2026-01-09 18:28:45] 2026-01-09 23:27:43,136 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-09 18:28:45] 2026-01-09 23:27:43,137 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-09 18:28:45] 2026-01-09 23:27:43,137 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-09 18:28:45] 2026-01-09 23:27:43,166 | INFO     | fitting pss+swap vs Time
[2026-01-09 18:28:45] 2026-01-09 23:27:43,167 | INFO     | sum of square deviations: 2027596823.465241
[2026-01-09 18:28:45] 2026-01-09 23:27:43,172 | INFO     | sum of deviations: -34053830298.486637
[2026-01-09 18:28:45] 2026-01-09 23:27:43,172 | INFO     | mean x: 1767995517.0534759
[2026-01-09 18:28:45] 2026-01-09 23:27:43,172 | INFO     | mean y: 2585295.748663102
[2026-01-09 18:28:45] 2026-01-09 23:27:43,172 | INFO     | intersect: 29696367910.444267
[2026-01-09 18:28:45] 2026-01-09 23:27:43,172 | INFO     | chi2: 2.1977810540735643
[2026-01-09 18:28:45] 2026-01-09 23:27:43,173 | INFO     | sum of square deviations: 1869262020.9505484
[2026-01-09 18:28:45] 2026-01-09 23:27:43,174 | INFO     | sum of deviations: -32229939854.390114
[2026-01-09 18:28:45] 2026-01-09 23:27:43,174 | INFO     | mean x: 1767995364.554945
[2026-01-09 18:28:45] 2026-01-09 23:27:43,174 | INFO     | mean y: 2587053.489010989
[2026-01-09 18:28:45] 2026-01-09 23:27:43,174 | INFO     | intersect: 30486480495.81658
[2026-01-09 18:28:45] 2026-01-09 23:27:43,174 | INFO     | chi2: 2.1946368722921505
[2026-01-09 18:28:45] 2026-01-09 23:27:43,174 | INFO     | current chi2=2.1946368722921505 (change=0.14306164736410057 %)
[2026-01-09 18:28:45] 2026-01-09 23:27:43,175 | INFO     | right removable region: 181
[2026-01-09 18:28:45] 2026-01-09 23:27:43,175 | INFO     | sum of square deviations: 1869255920.9505484
[2026-01-09 18:28:45] 2026-01-09 23:27:43,180 | INFO     | sum of deviations: -68645173309.68683
[2026-01-09 18:28:45] 2026-01-09 23:27:43,180 | INFO     | mean x: 1767995669.554945
[2026-01-09 18:28:45] 2026-01-09 23:27:43,180 | INFO     | mean y: 2618274.818681319
[2026-01-09 18:28:45] 2026-01-09 23:27:43,180 | INFO     | intersect: 64929184930.09997
[2026-01-09 18:28:45] 2026-01-09 23:27:43,181 | INFO     | chi2: 0.3739342668375902
[2026-01-09 18:28:45] 2026-01-09 23:27:43,181 | INFO     | current chi2=0.3739342668375902 (change=82.98582717580048 %)
[2026-01-09 18:28:45] 2026-01-09 23:27:43,181 | INFO     | sum of square deviations: 1719380293.4350324
[2026-01-09 18:28:45] 2026-01-09 23:27:43,182 | INFO     | sum of deviations: -70710877835.19202
[2026-01-09 18:28:45] 2026-01-09 23:27:43,182 | INFO     | mean x: 1767995822.056497
[2026-01-09 18:28:45] 2026-01-09 23:27:43,182 | INFO     | mean y: 2620367.8192090397
[2026-01-09 18:28:45] 2026-01-09 23:27:43,182 | INFO     | intersect: 72712850364.0028
[2026-01-09 18:28:45] 2026-01-09 23:27:43,182 | INFO     | chi2: 0.3218561654238046
[2026-01-09 18:28:45] 2026-01-09 23:27:43,182 | INFO     | current chi2=0.3218561654238046 (change=13.927073828835415 %)
[2026-01-09 18:28:45] 2026-01-09 23:27:43,183 | INFO     | left removable region: 20
[2026-01-09 18:28:45] 2026-01-09 23:27:43,183 | INFO     | sum of square deviations: 1293995446.6956463
[2026-01-09 18:28:45] 2026-01-09 23:27:43,188 | INFO     | sum of deviations: -54496004776.347824
[2026-01-09 18:28:45] 2026-01-09 23:27:43,188 | INFO     | mean x: 1767995944.0434783
[2026-01-09 18:28:45] 2026-01-09 23:27:43,188 | INFO     | mean y: 2608335.1925465837
[2026-01-09 18:28:45] 2026-01-09 23:27:43,188 | INFO     | intersect: 74460919341.76802
[2026-01-09 18:28:45] 2026-01-09 23:27:43,188 | INFO     | chi2: 0.3059726545757274
[2026-01-09 18:28:45] 2026-01-09 23:27:43,189 | INFO     | current memory leak: -42.11 B/s (using 161 data points, chi2=0.31)
[2026-01-09 18:28:45] 2026-01-09 23:27:43,189 | INFO     | could have reported an average CPU frequency of 2707 MHz (10 samples)
[2026-01-09 18:28:45] 2026-01-09 23:27:43,189 | INFO     | ..............................
[2026-01-09 18:28:45] 2026-01-09 23:27:43,189 | INFO     | . Timing measurements:
[2026-01-09 18:28:45] 2026-01-09 23:27:43,189 | INFO     | . get job = 0 s
[2026-01-09 18:28:45] 2026-01-09 23:27:43,189 | INFO     | . initial setup = 3 s
[2026-01-09 18:28:45] 2026-01-09 23:27:43,189 | INFO     | . payload setup = 34 s
[2026-01-09 18:28:45] 2026-01-09 23:27:43,190 | INFO     | . stage-in = 0 s
[2026-01-09 18:28:45] 2026-01-09 23:27:43,190 | INFO     | . payload execution = 11418 s
[2026-01-09 18:28:45] 2026-01-09 23:27:43,190 | INFO     | . stage-out = 3 s
[2026-01-09 18:28:45] 2026-01-09 23:27:43,190 | INFO     | . log creation = 0 s
[2026-01-09 18:28:45] 2026-01-09 23:27:43,190 | INFO     | ..............................
[2026-01-09 18:28:45] 2026-01-09 23:27:43,382 | INFO     | 
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | job summary report
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | --------------------------------------------------
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | PanDA job id: 6963189615
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | task id: 47898826
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | errors: (none)
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | pilot state: finished 
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | transexitcode: 0
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | exeerrorcode: 0
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | exeerrordiag: 
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | exitcode: 0
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | exitmsg: OK
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | cpuconsumptiontime: 57392 s
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | nevents: 400
[2026-01-09 18:28:45] 2026-01-09 23:27:43,383 | INFO     | neventsw: 0
[2026-01-09 18:28:45] 2026-01-09 23:27:43,384 | INFO     | pid: 992958
[2026-01-09 18:28:45] 2026-01-09 23:27:43,384 | INFO     | pgrp: 992958
[2026-01-09 18:28:45] 2026-01-09 23:27:43,384 | INFO     | corecount: 8
[2026-01-09 18:28:45] 2026-01-09 23:27:43,384 | INFO     | event service: False
[2026-01-09 18:28:45] 2026-01-09 23:27:43,384 | INFO     | sizes: {0: 2283800, 1: 2283999, 13: 2283999, 24: 2284055, 31: 2284345, 35: 2284373, 11456: 2313921, 11457: 2313920, 11461: 2322974, 11464: 2323030, 11480: 2323224}
[2026-01-09 18:28:45] 2026-01-09 23:27:43,384 | INFO     | --------------------------------------------------
[2026-01-09 18:28:45] 2026-01-09 23:27:43,384 | INFO     | 
[2026-01-09 18:28:45] 2026-01-09 23:27:43,384 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-01-09 18:28:45] 2026-01-09 23:27:43,443 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,444 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,444 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,444 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,444 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,444 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,444 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,444 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,444 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,444 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,444 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | job 6963189615 has completed (purged errors)
[2026-01-09 18:28:45] 2026-01-09 23:27:43,445 | INFO     | overall cleanup function is called
[2026-01-09 18:28:45] 2026-01-09 23:27:44,458 | INFO     | --- collectZombieJob: --- 10, [992958]
[2026-01-09 18:28:45] 2026-01-09 23:27:44,458 | INFO     | zombie collector waiting for pid 992958
[2026-01-09 18:28:45] 2026-01-09 23:27:44,458 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-09 18:28:45] 2026-01-09 23:27:44,458 | INFO     | collected zombie processes
[2026-01-09 18:28:45] 2026-01-09 23:27:44,459 | INFO     | will attempt to kill all subprocesses of pid=992958
[2026-01-09 18:28:45] 2026-01-09 23:27:45,317 | INFO     | process IDs to be killed: [992958] (in reverse order)
[2026-01-09 18:28:45] 2026-01-09 23:27:45,743 | WARNING  | found no corresponding commands to process id(s)
[2026-01-09 18:28:45] 2026-01-09 23:27:45,744 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-09 18:28:45] 2026-01-09 23:27:45,857 | INFO     | did not find any defunct processes belonging to 992958
[2026-01-09 18:28:45] 2026-01-09 23:27:45,962 | INFO     | did not find any defunct processes belonging to 992958
[2026-01-09 18:28:45] 2026-01-09 23:27:45,962 | INFO     | ready for new job
[2026-01-09 18:28:45] 2026-01-09 23:27:45,962 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-09 18:28:45] 2026-01-09 23:27:45,988 | INFO     | ***************************************
[2026-01-09 18:28:45] 2026-01-09 23:27:45,988 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-09 18:28:45] 2026-01-09 23:27:45,989 | INFO     | ***************************************
[2026-01-09 18:28:45] 2026-01-09 23:27:45,989 | INFO     | 
[2026-01-09 18:28:45] 2026-01-09 23:27:46,006 | INFO     | architecture information:
[2026-01-09 18:28:45] 2026-01-09 23:27:46,006 | INFO     | executing command: cat /etc/os-release
[2026-01-09 18:28:45] 2026-01-09 23:27:46,060 | INFO     | cat /etc/os-release:
[2026-01-09 18:28:45] NAME="CentOS Linux"
[2026-01-09 18:28:45] VERSION="7 (Core)"
[2026-01-09 18:28:45] ID="centos"
[2026-01-09 18:28:45] ID_LIKE="rhel fedora"
[2026-01-09 18:28:45] VERSION_ID="7"
[2026-01-09 18:28:45] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-09 18:28:45] ANSI_COLOR="0;31"
[2026-01-09 18:28:45] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-09 18:28:45] HOME_URL="https://www.centos.org/"
[2026-01-09 18:28:45] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-09 18:28:45] 
[2026-01-09 18:28:45] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-09 18:28:45] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-09 18:28:45] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-09 18:28:45] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-09 18:28:45] 
[2026-01-09 18:28:45] 2026-01-09 23:27:46,061 | INFO     | ***************************************
[2026-01-09 18:28:45] 2026-01-09 23:27:46,568 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-01-09 18:28:45] 2026-01-09 23:27:46,631 | INFO     | sufficient remaining disk space (93519347712 B)
[2026-01-09 18:28:45] 2026-01-09 23:27:46,631 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-09 18:28:45] 2026-01-09 23:27:46,631 | INFO     | current server update state: UPDATING_FINAL
[2026-01-09 18:28:45] 2026-01-09 23:27:46,631 | INFO     | update_server=False
[2026-01-09 18:28:45] 2026-01-09 23:27:46,631 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-09 18:28:45] 2026-01-09 23:27:46,634 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-09 18:28:45] 2026-01-09 23:27:46,634 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-09 18:28:45] 2026-01-09 23:27:46,635 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:28:45] 2026-01-09 23:27:46,635 | INFO     | will abort loop
[2026-01-09 18:28:45] 2026-01-09 23:27:46,914 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-09 18:28:45] 2026-01-09 23:27:47,172 | INFO     | all data control threads have been joined
[2026-01-09 18:28:45] 2026-01-09 23:27:47,202 | INFO     | all job control threads have been joined
[2026-01-09 18:28:45] 2026-01-09 23:27:47,434 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-09 18:28:45] 2026-01-09 23:27:47,637 | INFO     | [job] retrieve thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:47,640 | INFO     | [job] job monitor thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:47,753 | INFO     | [payload] failed_post thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:47,970 | INFO     | [job] create_data_payload thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:48,083 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:48,105 | INFO     | all payload control threads have been joined
[2026-01-09 18:28:45] 2026-01-09 23:27:48,177 | INFO     | [data] control thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:48,208 | INFO     | [job] control thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:48,298 | INFO     | [payload] validate_post thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:48,402 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-09 18:28:45] 2026-01-09 23:27:48,440 | INFO     | [job] validate thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:48,760 | INFO     | [data] copytool_in thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:48,826 | INFO     | [payload] validate_pre thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:49,069 | INFO     | [payload] execute_payloads thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:49,111 | INFO     | [payload] control thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:49,408 | INFO     | [job] queue monitor thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:49,441 | INFO     | [data] copytool_out thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:27:50,923 | INFO     | [data] queue_monitor thread has finished
[2026-01-09 18:28:45] 2026-01-09 23:28:16,587 | INFO     | PID=980475 has CPU usage=4.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-01-09 18:28:45] 2026-01-09 23:28:16,587 | INFO     | .. there are 28 such processes running
[2026-01-09 18:28:45] 2026-01-09 23:28:16,587 | INFO     | found 0 job(s) in 20 queues
[2026-01-09 18:28:45] 2026-01-09 23:28:16,587 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-09 18:28:45] 2026-01-09 23:28:16,587 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-09 18:28:45] 2026-01-09 23:28:38,986 | INFO     | [monitor] cgroup control has ended
[2026-01-09 18:28:45] 2026-01-09 23:28:40,210 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139661754890048)>', '<ExcThread(monitor, started 139660986672896)>']
[2026-01-09 18:28:45] 2026-01-09 23:28:40,752 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-09 18:28:45] 2026-01-09 23:28:40,752 | INFO     | [monitor] control thread has ended
[2026-01-09 18:28:45] 2026-01-09 23:28:45,236 | INFO     | all workflow threads have been joined
[2026-01-09 18:28:45] 2026-01-09 23:28:45,236 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-09 18:28:45] 2026-01-09 23:28:45,237 | INFO     | traces error code: 0
[2026-01-09 18:28:45] 2026-01-09 23:28:45,237 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-09 18:28:45] 2026-01-09 23:28:45,414 [wrapper] ==== pilot stdout END ====
[2026-01-09 18:28:45] 2026-01-09 23:28:45,416 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-09 18:28:45] 2026-01-09 23:28:45,419 [wrapper] pilotpid: 980475
[2026-01-09 18:28:45] 2026-01-09 23:28:45,421 [wrapper] Pilot exit status: 0
[2026-01-09 18:28:45] 2026-01-09 23:28:45,433 [wrapper] pandaids: 6963189615
[2026-01-09 18:28:45] 2026-01-09 23:28:45,524 [wrapper] cleanup supervisor_pilot 2024449 980476
[2026-01-09 18:28:45] 2026-01-09 23:28:45,528 [wrapper] Test setup, not cleaning
[2026-01-09 18:28:45] 2026-01-09 23:28:45,531 [wrapper] apfmon messages muted
[2026-01-09 18:28:45] 2026-01-09 23:28:45,533 [wrapper] ==== wrapper stdout END ====
[2026-01-09 18:28:45] 2026-01-09 23:28:45,535 [wrapper] ==== wrapper stderr END ====
[2026-01-09 18:28:45]  *** Error codes and diagnostics ***
[2026-01-09 18:28:45]     "exeErrorCode": 0,
[2026-01-09 18:28:45]     "exeErrorDiag": "",
[2026-01-09 18:28:45]     "pilotErrorCode": 0,
[2026-01-09 18:28:45]     "pilotErrorDiag": "",
[2026-01-09 18:28:45]  *** Listing of results directory ***
[2026-01-09 18:28:45] total 442040
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-09 18:28:45] -rwx------. 1 boincer umatlas     36322 Jan  8 23:25 runpilot2-wrapper.sh
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:30 queuedata.json
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas       100 Jan  9 15:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-09 18:28:45] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 15:14 run_atlas
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas       105 Jan  9 15:14 job.xml
[2026-01-09 18:28:45] -rw-r--r--. 2 boincer umatlas 225000748 Jan  9 15:14 EVNT.47898824._001478.pool.root.1
[2026-01-09 18:28:45] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:14 start_atlas.sh
[2026-01-09 18:28:45] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 15:14 shared
[2026-01-09 18:28:45] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 15:14 input.tar.gz
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas         0 Jan  9 15:14 boinc_lockfile
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 15:14 pandaJob.out
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas        57 Jan  9 15:14 setup.sh.local
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas    989364 Jan  9 15:15 agis_schedconf.cvmfs.json
[2026-01-09 18:28:45] drwx------. 5 boincer umatlas      4096 Jan  9 15:15 pilot3
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas      6876 Jan  9 18:22 init_data.xml
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas 219856713 Jan  9 18:26 HITS.47898826._038484.pool.root.1
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas       530 Jan  9 18:26 boinc_task_state.xml
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas      1043 Jan  9 18:27 memory_monitor_summary.json
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas   1516240 Jan  9 18:27 agis_ddmendpoints.agis.ALL.json
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas    417097 Jan  9 18:27 log.47898826._038484.job.log.tgz.1
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas        95 Jan  9 18:27 pilot_heartbeat.json
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas      7837 Jan  9 18:27 heartbeat.json
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas      8192 Jan  9 18:28 boinc_mmap_file
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas        27 Jan  9 18:28 wrapper_checkpoint.txt
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas      5009 Jan  9 18:28 pilotlog.txt
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas   1523901 Jan  9 18:28 log.47898826._038484.job.log.1
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas       357 Jan  9 18:28 output.list
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas       620 Jan  9 18:28 runtime_log
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas   1955840 Jan  9 18:28 result.tar.gz
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas      9348 Jan  9 18:28 runtime_log.err
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas       656 Jan  9 18:28 Q45LDmMFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyMmKDmNVNtGo.diag
[2026-01-09 18:28:45] -rw-r--r--. 1 boincer umatlas     21423 Jan  9 18:28 stderr.txt
[2026-01-09 18:28:45] HITS file was successfully produced:
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas 219856713 Jan  9 18:26 shared/HITS.pool.root.1
[2026-01-09 18:28:45]  *** Contents of shared directory: ***
[2026-01-09 18:28:45] total 436944
[2026-01-09 18:28:45] -rw-r--r--. 2 boincer umatlas 225000748 Jan  9 15:14 ATLAS.root_0
[2026-01-09 18:28:45] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:14 start_atlas.sh
[2026-01-09 18:28:45] -rw-r--r--. 2 boincer umatlas    592403 Jan  9 15:14 input.tar.gz
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas 219856713 Jan  9 18:26 HITS.pool.root.1
[2026-01-09 18:28:45] -rw-------. 1 boincer umatlas   1955840 Jan  9 18:28 result.tar.gz
18:28:47 (972900): run_atlas exited; CPU time 57975.612185
18:28:47 (972900): called boinc_finish(0)

</stderr_txt>
]]>

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