Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:42:27 (3566407): wrapper (7.7.26015): starting
05:42:27 (3566407): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 05:42:27] Arguments: --nthreads 3
[2026-01-10 05:42:27] Threads: 3
[2026-01-10 05:42:27] Checking for CVMFS
[2026-01-10 05:42:27] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 05:42:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 05:42:27] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 05:42:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 05:42:27] 2.9.2.0 2791136 3128 81772 154968 2 57 21569211 36864001 0 130560 0 2003542 99.988 119710 6180 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 05:42:27] CVMFS is ok
[2026-01-10 05:42:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 05:42:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 05:42:27] Further information can be found at the LHC@home message board.
[2026-01-10 05:42:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 05:42:27] Checking for apptainer binary...
[2026-01-10 05:42:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 05:42:27] Running /usr/bin/apptainer --version
[2026-01-10 05:42:27] apptainer version 1.4.1-1.1
[2026-01-10 05:42:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 05:42:27] thA337a
[2026-01-10 05:42:27] apptainer works
[2026-01-10 05:42:27] Set ATHENA_PROC_NUMBER=3
[2026-01-10 05:42:27] Set ATHENA_CORE_NUMBER=3
[2026-01-10 05:42:27] Starting ATLAS job with PandaID=6963188961
[2026-01-10 05:42:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 07:35:46]  *** The last 200 lines of the pilot log: ***
[2026-01-10 07:35:46] 2026-01-10 06:35:01,125 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 07:35:46] 2026-01-10 06:35:01,125 | INFO     | collected zombie processes
[2026-01-10 07:35:46] 2026-01-10 06:35:01,125 | INFO     | will attempt to kill all subprocesses of pid=3576569
[2026-01-10 07:35:46] 2026-01-10 06:35:01,169 | INFO     | process IDs to be killed: [3576569] (in reverse order)
[2026-01-10 07:35:46] 2026-01-10 06:35:01,192 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 07:35:46] 2026-01-10 06:35:01,192 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 07:35:46] 2026-01-10 06:35:01,193 | INFO     | did not find any defunct processes belonging to 3576569
[2026-01-10 07:35:46] 2026-01-10 06:35:01,195 | INFO     | did not find any defunct processes belonging to 3576569
[2026-01-10 07:35:46] 2026-01-10 06:35:01,195 | INFO     | ready for new job
[2026-01-10 07:35:46] 2026-01-10 06:35:01,195 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 07:35:46] 2026-01-10 06:35:01,195 | INFO     | ***************************************
[2026-01-10 07:35:46] 2026-01-10 06:35:01,195 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 07:35:46] 2026-01-10 06:35:01,195 | INFO     | ***************************************
[2026-01-10 07:35:46] 2026-01-10 06:35:01,195 | INFO     | 
[2026-01-10 07:35:46] 2026-01-10 06:35:01,196 | INFO     | architecture information:
[2026-01-10 07:35:46] 2026-01-10 06:35:01,196 | INFO     | executing command: cat /etc/os-release
[2026-01-10 07:35:46] 2026-01-10 06:35:01,204 | INFO     | cat /etc/os-release:
[2026-01-10 07:35:46] NAME="CentOS Linux"
[2026-01-10 07:35:46] VERSION="7 (Core)"
[2026-01-10 07:35:46] ID="centos"
[2026-01-10 07:35:46] ID_LIKE="rhel fedora"
[2026-01-10 07:35:46] VERSION_ID="7"
[2026-01-10 07:35:46] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 07:35:46] ANSI_COLOR="0;31"
[2026-01-10 07:35:46] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 07:35:46] HOME_URL="https://www.centos.org/"
[2026-01-10 07:35:46] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 07:35:46] 
[2026-01-10 07:35:46] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 07:35:46] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 07:35:46] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 07:35:46] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 07:35:46] 
[2026-01-10 07:35:46] 2026-01-10 06:35:01,204 | INFO     | ***************************************
[2026-01-10 07:35:46] 2026-01-10 06:35:01,708 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 07:35:46] 2026-01-10 06:35:01,720 | INFO     | sufficient remaining disk space (384325124096 B)
[2026-01-10 07:35:46] 2026-01-10 06:35:01,720 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 07:35:46] 2026-01-10 06:35:01,720 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 07:35:46] 2026-01-10 06:35:01,720 | INFO     | update_server=False
[2026-01-10 07:35:46] 2026-01-10 06:35:01,720 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 07:35:46] 2026-01-10 06:35:01,720 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:35:46] 2026-01-10 06:35:01,915 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 07:35:46] 2026-01-10 06:35:02,011 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-01-10 07:35:46] 2026-01-10 06:35:02,011 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-01-10 07:35:46] 2026-01-10 06:35:02,011 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 07:35:46] 2026-01-10 06:35:02,011 | INFO     | will abort loop
[2026-01-10 07:35:46] 2026-01-10 06:35:02,217 | INFO     | all payload control threads have been joined
[2026-01-10 07:35:46] 2026-01-10 06:35:02,355 | INFO     | all data control threads have been joined
[2026-01-10 07:35:46] 2026-01-10 06:35:02,557 | INFO     | all job control threads have been joined
[2026-01-10 07:35:46] 2026-01-10 06:35:02,726 | INFO     | [job] retrieve thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:02,726 | INFO     | [job] queue monitor thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:03,017 | INFO     | [job] job monitor thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:03,031 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 07:35:46] 2026-01-10 06:35:03,206 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:03,222 | INFO     | [payload] control thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:03,236 | INFO     | [data] copytool_in thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:03,361 | INFO     | [data] control thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:03,559 | INFO     | [job] control thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:03,712 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:03,733 | INFO     | [job] validate thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:03,736 | INFO     | [payload] validate_post thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:03,761 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:04,185 | INFO     | [payload] failed_post thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:05,037 | INFO     | [data] copytool_out thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:05,922 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:12,440 | INFO     | job.realtimelogging is not enabled
[2026-01-10 07:35:46] 2026-01-10 06:35:13,445 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 07:35:46] 2026-01-10 06:35:31,302 | INFO     | PID=3570130 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 07:35:46] 2026-01-10 06:35:31,302 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 07:35:46] 2026-01-10 06:35:31,302 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 07:35:46] 2026-01-10 06:35:31,302 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 07:35:46] 2026-01-10 06:35:40,111 | INFO     | [monitor] cgroup control has ended
[2026-01-10 07:35:46] 2026-01-10 06:35:41,585 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140245291505472)>', '<ExcThread(monitor, started 140244548568832)>']
[2026-01-10 07:35:46] 2026-01-10 06:35:42,359 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 07:35:46] 2026-01-10 06:35:42,359 | INFO     | [monitor] control thread has ended
[2026-01-10 07:35:46] 2026-01-10 06:35:46,596 | INFO     | all workflow threads have been joined
[2026-01-10 07:35:46] 2026-01-10 06:35:46,597 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 07:35:46] 2026-01-10 06:35:46,597 | INFO     | traces error code: 0
[2026-01-10 07:35:46] 2026-01-10 06:35:46,597 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 07:35:46] 2026-01-10 06:35:46,647 [wrapper] ==== pilot stdout END ====
[2026-01-10 07:35:46] 2026-01-10 06:35:46,649 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 07:35:46] 2026-01-10 06:35:46,651 [wrapper] pilotpid: 3570130
[2026-01-10 07:35:46] 2026-01-10 06:35:46,653 [wrapper] Pilot exit status: 0
[2026-01-10 07:35:46] 2026-01-10 06:35:46,660 [wrapper] pandaids: 6963188961
[2026-01-10 07:35:46] 2026-01-10 06:35:46,676 [wrapper] cleanup supervisor_pilot 3591049 3570131
[2026-01-10 07:35:46] 2026-01-10 06:35:46,678 [wrapper] Test setup, not cleaning
[2026-01-10 07:35:46] 2026-01-10 06:35:46,681 [wrapper] apfmon messages muted
[2026-01-10 07:35:46] 2026-01-10 06:35:46,683 [wrapper] ==== wrapper stdout END ====
[2026-01-10 07:35:46] 2026-01-10 06:35:46,685 [wrapper] ==== wrapper stderr END ====
[2026-01-10 07:35:46]  *** Error codes and diagnostics ***
[2026-01-10 07:35:46]     "exeErrorCode": 0,
[2026-01-10 07:35:46]     "exeErrorDiag": "",
[2026-01-10 07:35:46]     "pilotErrorCode": 0,
[2026-01-10 07:35:46]     "pilotErrorDiag": "",
[2026-01-10 07:35:46]  *** Listing of results directory ***
[2026-01-10 07:35:46] total 441712
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 07:35:46] -rwx------ 1 boinc boinc     36322 Jan  9 05:25 runpilot2-wrapper.sh
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:30 queuedata.json
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc       100 Jan 10 05:42 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 07:35:46] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 05:42 run_atlas
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc       105 Jan 10 05:42 job.xml
[2026-01-10 07:35:46] -rw-r--r-- 2 boinc boinc 224370675 Jan 10 05:42 EVNT.47898824._001454.pool.root.1
[2026-01-10 07:35:46] -rw-r--r-- 2 boinc boinc    592399 Jan 10 05:42 input.tar.gz
[2026-01-10 07:35:46] -rw-r--r-- 2 boinc boinc     15847 Jan 10 05:42 start_atlas.sh
[2026-01-10 07:35:46] drwxrwx--x 2 boinc boinc      4096 Jan 10 05:42 shared
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc         0 Jan 10 05:42 boinc_setup_complete
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc      6446 Jan 10 05:42 init_data.xml
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc         0 Jan 10 05:42 boinc_lockfile
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc      2520 Jan 10 05:42 pandaJob.out
[2026-01-10 07:35:46] -rw------- 1 boinc boinc    989374 Jan 10 05:42 agis_schedconf.cvmfs.json
[2026-01-10 07:35:46] -rw------- 1 boinc boinc   1516240 Jan 10 05:42 agis_ddmendpoints.agis.ALL.json
[2026-01-10 07:35:46] drwx------ 5 boinc boinc      4096 Jan 10 05:42 pilot3
[2026-01-10 07:35:46] -rw------- 1 boinc boinc 221502286 Jan 10 07:34 HITS.47898826._037898.pool.root.1
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc       529 Jan 10 07:34 boinc_task_state.xml
[2026-01-10 07:35:46] -rw------- 1 boinc boinc      1023 Jan 10 07:34 memory_monitor_summary.json
[2026-01-10 07:35:46] -rw------- 1 boinc boinc    296565 Jan 10 07:34 log.47898826._037898.job.log.tgz.1
[2026-01-10 07:35:46] -rw------- 1 boinc boinc      7743 Jan 10 07:35 heartbeat.json
[2026-01-10 07:35:46] -rw------- 1 boinc boinc        95 Jan 10 07:35 pilot_heartbeat.json
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc      8192 Jan 10 07:35 boinc_mmap_file
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc        27 Jan 10 07:35 wrapper_checkpoint.txt
[2026-01-10 07:35:46] -rw------- 1 boinc boinc      5010 Jan 10 07:35 pilotlog.txt
[2026-01-10 07:35:46] -rw------- 1 boinc boinc    974822 Jan 10 07:35 log.47898826._037898.job.log.1
[2026-01-10 07:35:46] -rw------- 1 boinc boinc       357 Jan 10 07:35 output.list
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc       620 Jan 10 07:35 runtime_log
[2026-01-10 07:35:46] -rw------- 1 boinc boinc   1290240 Jan 10 07:35 result.tar.gz
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc      8902 Jan 10 07:35 runtime_log.err
[2026-01-10 07:35:46] -rw------- 1 boinc boinc       660 Jan 10 07:35 fK2LDmLFJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmc9gKDmJ0AXAo.diag
[2026-01-10 07:35:46] -rw-r--r-- 1 boinc boinc     10740 Jan 10 07:35 stderr.txt
[2026-01-10 07:35:46] HITS file was successfully produced:
[2026-01-10 07:35:46] -rw------- 1 boinc boinc 221502286 Jan 10 07:34 shared/HITS.pool.root.1
[2026-01-10 07:35:46]  *** Contents of shared directory: ***
[2026-01-10 07:35:46] total 437288
[2026-01-10 07:35:46] -rw-r--r-- 2 boinc boinc 224370675 Jan 10 05:42 ATLAS.root_0
[2026-01-10 07:35:46] -rw-r--r-- 2 boinc boinc    592399 Jan 10 05:42 input.tar.gz
[2026-01-10 07:35:46] -rw-r--r-- 2 boinc boinc     15847 Jan 10 05:42 start_atlas.sh
[2026-01-10 07:35:46] -rw------- 1 boinc boinc 221502286 Jan 10 07:34 HITS.pool.root.1
[2026-01-10 07:35:46] -rw------- 1 boinc boinc   1290240 Jan 10 07:35 result.tar.gz
07:35:47 (3566407): run_atlas exited; CPU time 19564.667983
07:35:47 (3566407): called boinc_finish(0)

</stderr_txt>
]]>

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