Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:23:12 (72403): wrapper (7.7.26015): starting
15:23:12 (72403): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 15:23:12] Arguments: --nthreads 8
[2026-01-09 15:23:12] Threads: 8
[2026-01-09 15:23:12] Checking for CVMFS
[2026-01-09 15:23:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 15:23:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 15:23:13] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 15:23:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 15:23:13] 2.13.3.0 9860 21972 159836 154956 1 265 33967708 39288832 8722 16776704 0 10573018 99.365 18064413 38813 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-01-09 15:23:13] CVMFS is ok
[2026-01-09 15:23:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 15:23:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 15:23:13] Further information can be found at the LHC@home message board.
[2026-01-09 15:23:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 15:23:13] Checking for apptainer binary...
[2026-01-09 15:23:13] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-09 15:23:13] Running /usr/bin/apptainer --version
[2026-01-09 15:23:13] apptainer version 1.4.5-2.el9
[2026-01-09 15:23:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 15:23:13] c-210-21.aglt2.org
[2026-01-09 15:23:13] apptainer works
[2026-01-09 15:23:13] Set ATHENA_PROC_NUMBER=8
[2026-01-09 15:23:13] Set ATHENA_CORE_NUMBER=8
[2026-01-09 15:23:13] Starting ATLAS job with PandaID=6963193613
[2026-01-09 15:23:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 03:03:49]  *** The last 200 lines of the pilot log: ***
[2026-01-10 03:03:49] 2026-01-10 08:02:37,100 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 03:03:49] 2026-01-10 08:02:37,134 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.89465
[2026-01-10 03:03:49] 2026-01-10 08:02:37,170 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6963193613/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 03:03:49] 2026-01-10 08:02:37,171 | INFO     | extracted standard info from prmon json
[2026-01-10 03:03:49] 2026-01-10 08:02:37,171 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 03:03:49] 2026-01-10 08:02:37,171 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 03:03:49] 2026-01-10 08:02:37,172 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 03:03:49] 2026-01-10 08:02:37,172 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 03:03:49] 2026-01-10 08:02:37,380 | INFO     | fitting pss+swap vs Time
[2026-01-10 03:03:49] 2026-01-10 08:02:37,389 | INFO     | sum of square deviations: 100540133899.0127
[2026-01-10 03:03:49] 2026-01-10 08:02:37,494 | INFO     | sum of deviations: -182015089190.86023
[2026-01-10 03:03:49] 2026-01-10 08:02:37,494 | INFO     | mean x: 1768011151.467249
[2026-01-10 03:03:49] 2026-01-10 08:02:37,495 | INFO     | mean y: 2538178.9839883554
[2026-01-10 03:03:49] 2026-01-10 08:02:37,495 | INFO     | intersect: 3203296870.512913
[2026-01-10 03:03:49] 2026-01-10 08:02:37,531 | INFO     | chi2: 3.665532657542605
[2026-01-10 03:03:49] 2026-01-10 08:02:37,532 | INFO     | sum of square deviations: 98361051906.57628
[2026-01-10 03:03:49] 2026-01-10 08:02:37,691 | INFO     | sum of deviations: -46448404115.56307
[2026-01-10 03:03:49] 2026-01-10 08:02:37,692 | INFO     | mean x: 1768010998.9750733
[2026-01-10 03:03:49] 2026-01-10 08:02:37,692 | INFO     | mean y: 2547639.2609970677
[2026-01-10 03:03:49] 2026-01-10 08:02:37,692 | INFO     | intersect: 837444051.7063795
[2026-01-10 03:03:49] 2026-01-10 08:02:37,693 | INFO     | chi2: 1.4967567507039852
[2026-01-10 03:03:49] 2026-01-10 08:02:37,693 | INFO     | current chi2=1.4967567507039852 (change=59.16673262686412 %)
[2026-01-10 03:03:49] 2026-01-10 08:02:37,694 | INFO     | sum of square deviations: 96213607994.98085
[2026-01-10 03:03:49] 2026-01-10 08:02:37,841 | INFO     | sum of deviations: -46040586699.00889
[2026-01-10 03:03:49] 2026-01-10 08:02:37,842 | INFO     | mean x: 1768010846.4800591
[2026-01-10 03:03:49] 2026-01-10 08:02:37,842 | INFO     | mean y: 2547668.2215657313
[2026-01-10 03:03:49] 2026-01-10 08:02:37,842 | INFO     | intersect: 848584506.0293698
[2026-01-10 03:03:49] 2026-01-10 08:02:37,847 | INFO     | chi2: 1.4966313608917352
[2026-01-10 03:03:49] 2026-01-10 08:02:37,848 | INFO     | current chi2=1.4966313608917352 (change=0.008377434221759104 %)
[2026-01-10 03:03:49] 2026-01-10 08:02:37,848 | INFO     | right removable region: 676
[2026-01-10 03:03:49] 2026-01-10 08:02:37,849 | INFO     | sum of square deviations: 98360520470.67029
[2026-01-10 03:03:49] 2026-01-10 08:02:37,887 | INFO     | sum of deviations: -279135169242.5629
[2026-01-10 03:03:49] 2026-01-10 08:02:37,887 | INFO     | mean x: 1768011303.978006
[2026-01-10 03:03:49] 2026-01-10 08:02:37,887 | INFO     | mean y: 2544950.7624633433
[2026-01-10 03:03:49] 2026-01-10 08:02:37,888 | INFO     | intersect: 5019945552.112718
[2026-01-10 03:03:49] 2026-01-10 08:02:37,889 | INFO     | chi2: 2.3887863471485518
[2026-01-10 03:03:49] 2026-01-10 08:02:37,889 | INFO     | current chi2=2.3887863471485518 (change=34.831126323943096 %)
[2026-01-10 03:03:49] 2026-01-10 08:02:37,890 | INFO     | sum of square deviations: 96212670415.14345
[2026-01-10 03:03:49] 2026-01-10 08:02:37,933 | INFO     | sum of deviations: -267524817449.858
[2026-01-10 03:03:49] 2026-01-10 08:02:37,963 | INFO     | mean x: 1768011456.4874446
[2026-01-10 03:03:49] 2026-01-10 08:02:37,963 | INFO     | mean y: 2544125.7813884784
[2026-01-10 03:03:49] 2026-01-10 08:02:37,963 | INFO     | intersect: 4918600816.705696
[2026-01-10 03:03:49] 2026-01-10 08:02:37,964 | INFO     | chi2: 2.3851915405194593
[2026-01-10 03:03:49] 2026-01-10 08:02:37,964 | INFO     | current chi2=2.3851915405194593 (change=0.15048673705723234 %)
[2026-01-10 03:03:49] 2026-01-10 08:02:37,964 | INFO     | left removable region: 20
[2026-01-10 03:03:49] 2026-01-10 08:02:37,965 | INFO     | sum of square deviations: 87533867264.7423
[2026-01-10 03:03:49] 2026-01-10 08:02:38,023 | INFO     | sum of deviations: -102204756062.10663
[2026-01-10 03:03:49] 2026-01-10 08:02:38,023 | INFO     | mean x: 1768011426.019817
[2026-01-10 03:03:49] 2026-01-10 08:02:38,023 | INFO     | mean y: 2551618.7774390243
[2026-01-10 03:03:49] 2026-01-10 08:02:38,023 | INFO     | intersect: 2066886054.783289
[2026-01-10 03:03:49] 2026-01-10 08:02:38,024 | INFO     | chi2: 0.1780209013387786
[2026-01-10 03:03:49] 2026-01-10 08:02:38,025 | INFO     | current memory leak: -1.17 B/s (using 656 data points, chi2=0.18)
[2026-01-10 03:03:49] 2026-01-10 08:02:38,026 | INFO     | could have reported an average CPU frequency of 2601 MHz (26 samples)
[2026-01-10 03:03:49] 2026-01-10 08:02:38,026 | INFO     | ..............................
[2026-01-10 03:03:49] 2026-01-10 08:02:38,026 | INFO     | . Timing measurements:
[2026-01-10 03:03:49] 2026-01-10 08:02:38,026 | INFO     | . get job = 0 s
[2026-01-10 03:03:49] 2026-01-10 08:02:38,026 | INFO     | . initial setup = 2 s
[2026-01-10 03:03:49] 2026-01-10 08:02:38,034 | INFO     | . payload setup = 5 s
[2026-01-10 03:03:49] 2026-01-10 08:02:38,035 | INFO     | . stage-in = 0 s
[2026-01-10 03:03:49] 2026-01-10 08:02:38,035 | INFO     | . payload execution = 41860 s
[2026-01-10 03:03:49] 2026-01-10 08:02:38,035 | INFO     | . stage-out = 12 s
[2026-01-10 03:03:49] 2026-01-10 08:02:38,035 | INFO     | . log creation = 2 s
[2026-01-10 03:03:49] 2026-01-10 08:02:38,035 | INFO     | ..............................
[2026-01-10 03:03:49] 2026-01-10 08:02:38,859 | INFO     | 
[2026-01-10 03:03:49] 2026-01-10 08:02:38,860 | INFO     | job summary report
[2026-01-10 03:03:49] 2026-01-10 08:02:38,860 | INFO     | --------------------------------------------------
[2026-01-10 03:03:49] 2026-01-10 08:02:38,860 | INFO     | PanDA job id: 6963193613
[2026-01-10 03:03:49] 2026-01-10 08:02:38,860 | INFO     | task id: 47898826
[2026-01-10 03:03:49] 2026-01-10 08:02:38,860 | INFO     | errors: (none)
[2026-01-10 03:03:49] 2026-01-10 08:02:38,860 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 03:03:49] 2026-01-10 08:02:38,860 | INFO     | pilot state: finished 
[2026-01-10 03:03:49] 2026-01-10 08:02:38,860 | INFO     | transexitcode: 0
[2026-01-10 03:03:49] 2026-01-10 08:02:38,861 | INFO     | exeerrorcode: 0
[2026-01-10 03:03:49] 2026-01-10 08:02:38,861 | INFO     | exeerrordiag: 
[2026-01-10 03:03:49] 2026-01-10 08:02:38,861 | INFO     | exitcode: 0
[2026-01-10 03:03:49] 2026-01-10 08:02:38,861 | INFO     | exitmsg: OK
[2026-01-10 03:03:49] 2026-01-10 08:02:38,861 | INFO     | cpuconsumptiontime: 69027 s
[2026-01-10 03:03:49] 2026-01-10 08:02:38,861 | INFO     | nevents: 400
[2026-01-10 03:03:49] 2026-01-10 08:02:38,861 | INFO     | neventsw: 0
[2026-01-10 03:03:49] 2026-01-10 08:02:38,861 | INFO     | pid: 82709
[2026-01-10 03:03:49] 2026-01-10 08:02:38,861 | INFO     | pgrp: 82709
[2026-01-10 03:03:49] 2026-01-10 08:02:38,861 | INFO     | corecount: 8
[2026-01-10 03:03:49] 2026-01-10 08:02:38,862 | INFO     | event service: False
[2026-01-10 03:03:49] 2026-01-10 08:02:38,862 | INFO     | sizes: {0: 2283971, 4: 2284233, 11: 2284261, 41870: 2327279, 41871: 2327278, 41884: 2336332, 41887: 2336516, 41941: 2336710}
[2026-01-10 03:03:49] 2026-01-10 08:02:38,862 | INFO     | --------------------------------------------------
[2026-01-10 03:03:49] 2026-01-10 08:02:38,862 | INFO     | 
[2026-01-10 03:03:49] 2026-01-10 08:02:38,862 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-01-10 03:03:49] 2026-01-10 08:02:38,953 | INFO     | PID=76080 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 03:03:49] 2026-01-10 08:02:38,954 | INFO     | .. there are 7 such processes running
[2026-01-10 03:03:49] 2026-01-10 08:02:39,032 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,032 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,032 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,032 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,032 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,032 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,033 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,033 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,033 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,033 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,033 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,033 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,033 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,033 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,033 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,034 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,034 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,034 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 03:03:49] 2026-01-10 08:02:39,034 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,034 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 03:03:49] 2026-01-10 08:02:39,034 | INFO     | job 6963193613 has completed (purged errors)
[2026-01-10 03:03:49] 2026-01-10 08:02:39,034 | INFO     | overall cleanup function is called
[2026-01-10 03:03:49] 2026-01-10 08:02:40,051 | INFO     | --- collectZombieJob: --- 10, [82709]
[2026-01-10 03:03:49] 2026-01-10 08:02:40,056 | INFO     | zombie collector waiting for pid 82709
[2026-01-10 03:03:49] 2026-01-10 08:02:40,056 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 03:03:49] 2026-01-10 08:02:40,056 | INFO     | collected zombie processes
[2026-01-10 03:03:49] 2026-01-10 08:02:40,056 | INFO     | will attempt to kill all subprocesses of pid=82709
[2026-01-10 03:03:49] 2026-01-10 08:02:41,605 | INFO     | process IDs to be killed: [82709] (in reverse order)
[2026-01-10 03:03:49] 2026-01-10 08:02:41,907 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 03:03:49] 2026-01-10 08:02:41,908 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 03:03:49] 2026-01-10 08:02:41,925 | INFO     | did not find any defunct processes belonging to 82709
[2026-01-10 03:03:49] 2026-01-10 08:02:41,941 | INFO     | did not find any defunct processes belonging to 82709
[2026-01-10 03:03:49] 2026-01-10 08:02:41,941 | INFO     | ready for new job
[2026-01-10 03:03:49] 2026-01-10 08:02:41,941 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 03:03:49] 2026-01-10 08:02:41,949 | INFO     | ***************************************
[2026-01-10 03:03:49] 2026-01-10 08:02:41,949 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 03:03:49] 2026-01-10 08:02:41,949 | INFO     | ***************************************
[2026-01-10 03:03:49] 2026-01-10 08:02:41,949 | INFO     | 
[2026-01-10 03:03:49] 2026-01-10 08:02:41,955 | INFO     | architecture information:
[2026-01-10 03:03:49] 2026-01-10 08:02:41,960 | INFO     | executing command: cat /etc/os-release
[2026-01-10 03:03:49] 2026-01-10 08:02:42,016 | INFO     | cat /etc/os-release:
[2026-01-10 03:03:49] NAME="CentOS Linux"
[2026-01-10 03:03:49] VERSION="7 (Core)"
[2026-01-10 03:03:49] ID="centos"
[2026-01-10 03:03:49] ID_LIKE="rhel fedora"
[2026-01-10 03:03:49] VERSION_ID="7"
[2026-01-10 03:03:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 03:03:49] ANSI_COLOR="0;31"
[2026-01-10 03:03:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 03:03:49] HOME_URL="https://www.centos.org/"
[2026-01-10 03:03:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 03:03:49] 
[2026-01-10 03:03:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 03:03:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 03:03:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 03:03:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 03:03:49] 
[2026-01-10 03:03:49] 2026-01-10 08:02:42,016 | INFO     | ***************************************
[2026-01-10 03:03:49] 2026-01-10 08:02:42,520 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-01-10 03:03:49] 2026-01-10 08:02:42,585 | INFO     | sufficient remaining disk space (53284438016 B)
[2026-01-10 03:03:49] 2026-01-10 08:02:42,585 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 03:03:49] 2026-01-10 08:02:42,585 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 03:03:49] 2026-01-10 08:02:42,586 | INFO     | update_server=False
[2026-01-10 03:03:49] 2026-01-10 08:02:42,586 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 03:03:49] 2026-01-10 08:02:42,586 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:03:49] 2026-01-10 08:02:42,586 | INFO     | aborting loop
[2026-01-10 03:03:49] 2026-01-10 08:02:42,643 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 03:03:49] 2026-01-10 08:02:43,230 | INFO     | all data control threads have been joined
[2026-01-10 03:03:49] 2026-01-10 08:02:43,518 | INFO     | all job control threads have been joined
[2026-01-10 03:03:49] 2026-01-10 08:02:43,571 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 03:03:49] 2026-01-10 08:02:43,593 | INFO     | all payload control threads have been joined
[2026-01-10 03:03:49] 2026-01-10 08:02:43,598 | INFO     | [job] retrieve thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:43,598 | INFO     | [job] job monitor thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,069 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,073 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,237 | INFO     | [data] control thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,525 | INFO     | [job] control thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,532 | INFO     | [payload] validate_post thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,578 | INFO     | [job] queue monitor thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,600 | INFO     | [payload] control thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,651 | INFO     | [data] copytool_out thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,835 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,905 | INFO     | [job] validate thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:44,938 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:45,050 | INFO     | [payload] failed_post thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:45,108 | INFO     | [data] copytool_in thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:02:45,462 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 03:03:49] 2026-01-10 08:02:49,471 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 03:03:49] 2026-01-10 08:03:13,057 | INFO     | PID=76080 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-01-10 03:03:49] 2026-01-10 08:03:13,057 | INFO     | .. there are 7 such processes running
[2026-01-10 03:03:49] 2026-01-10 08:03:13,060 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 03:03:49] 2026-01-10 08:03:13,061 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 03:03:49] 2026-01-10 08:03:13,061 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 03:03:49] 2026-01-10 08:03:40,842 | INFO     | [monitor] cgroup control has ended
[2026-01-10 03:03:49] 2026-01-10 08:03:41,202 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139803427149632)>', '<ExcThread(monitor, started 139803146290944)>']
[2026-01-10 03:03:49] 2026-01-10 08:03:41,247 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 03:03:49] 2026-01-10 08:03:41,248 | INFO     | [monitor] control thread has ended
[2026-01-10 03:03:49] 2026-01-10 08:03:46,227 | INFO     | all workflow threads have been joined
[2026-01-10 03:03:49] 2026-01-10 08:03:46,228 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 03:03:49] 2026-01-10 08:03:46,228 | INFO     | traces error code: 0
[2026-01-10 03:03:49] 2026-01-10 08:03:46,228 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 03:03:49] 2026-01-10 08:03:47,479 [wrapper] ==== pilot stdout END ====
[2026-01-10 03:03:49] 2026-01-10 08:03:47,481 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 03:03:49] 2026-01-10 08:03:47,483 [wrapper] pilotpid: 76080
[2026-01-10 03:03:49] 2026-01-10 08:03:47,487 [wrapper] Pilot exit status: 0
[2026-01-10 03:03:49] 2026-01-10 08:03:47,658 [wrapper] pandaids: 6963193613
[2026-01-10 03:03:49] 2026-01-10 08:03:48,050 [wrapper] cleanup supervisor_pilot 1089677 76081
[2026-01-10 03:03:49] 2026-01-10 08:03:48,087 [wrapper] Test setup, not cleaning
[2026-01-10 03:03:49] 2026-01-10 08:03:48,113 [wrapper] apfmon messages muted
[2026-01-10 03:03:49] 2026-01-10 08:03:48,126 [wrapper] ==== wrapper stdout END ====
[2026-01-10 03:03:49] 2026-01-10 08:03:48,145 [wrapper] ==== wrapper stderr END ====
[2026-01-10 03:03:49]  *** Error codes and diagnostics ***
[2026-01-10 03:03:49]     "exeErrorCode": 0,
[2026-01-10 03:03:49]     "exeErrorDiag": "",
[2026-01-10 03:03:49]     "pilotErrorCode": 0,
[2026-01-10 03:03:49]     "pilotErrorDiag": "",
[2026-01-10 03:03:49]  *** Listing of results directory ***
[2026-01-10 03:03:49] total 450920
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas    579449 Jan  8 23:21 pilot3.tar.gz
[2026-01-10 03:03:49] -rwx------. 1 boincer umatlas     36322 Jan  8 23:25 runpilot2-wrapper.sh
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas      5112 Jan  8 23:30 queuedata.json
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas       100 Jan  9 15:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 03:03:49] -rwxr-xr-x. 1 boincer umatlas      7986 Jan  9 15:23 run_atlas
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas       105 Jan  9 15:23 job.xml
[2026-01-10 03:03:49] -rw-r--r--. 2 boincer umatlas 223592325 Jan  9 15:23 EVNT.47898824._001502.pool.root.1
[2026-01-10 03:03:49] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:23 start_atlas.sh
[2026-01-10 03:03:49] drwxrwx--x. 2 boincer umatlas      4096 Jan  9 15:23 shared
[2026-01-10 03:03:49] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 15:23 input.tar.gz
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas         0 Jan  9 15:23 boinc_lockfile
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas      2520 Jan  9 15:23 pandaJob.out
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas        57 Jan  9 15:23 setup.sh.local
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas    989381 Jan  9 15:23 agis_schedconf.cvmfs.json
[2026-01-10 03:03:49] drwx------. 5 boincer umatlas      4096 Jan  9 15:23 pilot3
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas 222491135 Jan 10 02:58 HITS.47898826._039086.pool.root.1
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas       531 Jan 10 02:59 boinc_task_state.xml
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas      1040 Jan 10 03:01 memory_monitor_summary.json
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas   1516240 Jan 10 03:01 agis_ddmendpoints.agis.ALL.json
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas    789705 Jan 10 03:01 log.47898826._039086.job.log.tgz.1
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas      6658 Jan 10 03:02 init_data.xml
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas      7827 Jan 10 03:02 heartbeat.json
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas        95 Jan 10 03:03 pilot_heartbeat.json
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas      8192 Jan 10 03:03 boinc_mmap_file
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas        28 Jan 10 03:03 wrapper_checkpoint.txt
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas      4821 Jan 10 03:03 pilotlog.txt
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas   5083830 Jan 10 03:03 log.47898826._039086.job.log.1
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas       357 Jan 10 03:03 output.list
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas       620 Jan 10 03:03 runtime_log
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas   5888000 Jan 10 03:03 result.tar.gz
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas      9343 Jan 10 03:03 runtime_log.err
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas       657 Jan 10 03:03 hiJLDmZFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmgNmKDmtIatLn.diag
[2026-01-10 03:03:49] -rw-r--r--. 1 boincer umatlas     20927 Jan 10 03:03 stderr.txt
[2026-01-10 03:03:49] HITS file was successfully produced:
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas 222491135 Jan 10 02:58 shared/HITS.pool.root.1
[2026-01-10 03:03:49]  *** Contents of shared directory: ***
[2026-01-10 03:03:49] total 441984
[2026-01-10 03:03:49] -rw-r--r--. 2 boincer umatlas 223592325 Jan  9 15:23 ATLAS.root_0
[2026-01-10 03:03:49] -rw-r--r--. 2 boincer umatlas     15847 Jan  9 15:23 start_atlas.sh
[2026-01-10 03:03:49] -rw-r--r--. 2 boincer umatlas    592399 Jan  9 15:23 input.tar.gz
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas 222491135 Jan 10 02:58 HITS.pool.root.1
[2026-01-10 03:03:49] -rw-------. 1 boincer umatlas   5888000 Jan 10 03:03 result.tar.gz
03:03:50 (72403): run_atlas exited; CPU time 70031.923698
03:03:50 (72403): called boinc_finish(0)

</stderr_txt>
]]>

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