Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:50:56 (2900833): wrapper (7.7.26015): starting
14:50:56 (2900833): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 14:50:56] Arguments: --nthreads 3
[2026-01-10 14:50:56] Threads: 3
[2026-01-10 14:50:56] Checking for CVMFS
[2026-01-10 14:50:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 14:50:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 14:50:57] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 14:50:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 14:50:57] 2.9.2.0 2215334 3100 77352 154981 2 81 21655108 36864000 0 130560 0 1832868 99.988 115124 2815 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 14:50:57] CVMFS is ok
[2026-01-10 14:50:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 14:50:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 14:50:57] Further information can be found at the LHC@home message board.
[2026-01-10 14:50:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 14:50:57] Checking for apptainer binary...
[2026-01-10 14:50:57] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 14:50:57] Running /usr/bin/apptainer --version
[2026-01-10 14:50:57] apptainer version 1.4.1-1.1
[2026-01-10 14:50:57] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 14:50:57] thA333
[2026-01-10 14:50:57] apptainer works
[2026-01-10 14:50:57] Set ATHENA_PROC_NUMBER=3
[2026-01-10 14:50:57] Set ATHENA_CORE_NUMBER=3
[2026-01-10 14:50:57] Starting ATLAS job with PandaID=6963192147
[2026-01-10 14:50:57] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 16:58:26]  *** The last 200 lines of the pilot log: ***
[2026-01-10 16:58:26] 2026-01-10 15:57:20,297 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,297 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,297 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | job 6963192147 has completed (purged errors)
[2026-01-10 16:58:26] 2026-01-10 15:57:20,298 | INFO     | overall cleanup function is called
[2026-01-10 16:58:26] 2026-01-10 15:57:21,304 | INFO     | --- collectZombieJob: --- 10, [2911021]
[2026-01-10 16:58:26] 2026-01-10 15:57:21,305 | INFO     | zombie collector waiting for pid 2911021
[2026-01-10 16:58:26] 2026-01-10 15:57:21,305 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 16:58:26] 2026-01-10 15:57:21,305 | INFO     | collected zombie processes
[2026-01-10 16:58:26] 2026-01-10 15:57:21,305 | INFO     | will attempt to kill all subprocesses of pid=2911021
[2026-01-10 16:58:26] 2026-01-10 15:57:21,345 | INFO     | process IDs to be killed: [2911021] (in reverse order)
[2026-01-10 16:58:26] 2026-01-10 15:57:21,369 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 16:58:26] 2026-01-10 15:57:21,369 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 16:58:26] 2026-01-10 15:57:21,371 | INFO     | did not find any defunct processes belonging to 2911021
[2026-01-10 16:58:26] 2026-01-10 15:57:21,372 | INFO     | did not find any defunct processes belonging to 2911021
[2026-01-10 16:58:26] 2026-01-10 15:57:21,372 | INFO     | ready for new job
[2026-01-10 16:58:26] 2026-01-10 15:57:21,372 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 16:58:26] 2026-01-10 15:57:21,372 | INFO     | ***************************************
[2026-01-10 16:58:26] 2026-01-10 15:57:21,372 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 16:58:26] 2026-01-10 15:57:21,372 | INFO     | ***************************************
[2026-01-10 16:58:26] 2026-01-10 15:57:21,373 | INFO     | 
[2026-01-10 16:58:26] 2026-01-10 15:57:21,373 | INFO     | architecture information:
[2026-01-10 16:58:26] 2026-01-10 15:57:21,373 | INFO     | executing command: cat /etc/os-release
[2026-01-10 16:58:26] 2026-01-10 15:57:21,383 | INFO     | cat /etc/os-release:
[2026-01-10 16:58:26] NAME="CentOS Linux"
[2026-01-10 16:58:26] VERSION="7 (Core)"
[2026-01-10 16:58:26] ID="centos"
[2026-01-10 16:58:26] ID_LIKE="rhel fedora"
[2026-01-10 16:58:26] VERSION_ID="7"
[2026-01-10 16:58:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 16:58:26] ANSI_COLOR="0;31"
[2026-01-10 16:58:26] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 16:58:26] HOME_URL="https://www.centos.org/"
[2026-01-10 16:58:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 16:58:26] 
[2026-01-10 16:58:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 16:58:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 16:58:26] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 16:58:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 16:58:26] 
[2026-01-10 16:58:26] 2026-01-10 15:57:21,383 | INFO     | ***************************************
[2026-01-10 16:58:26] 2026-01-10 15:57:21,887 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 16:58:26] 2026-01-10 15:57:21,900 | INFO     | sufficient remaining disk space (239313354752 B)
[2026-01-10 16:58:26] 2026-01-10 15:57:21,900 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 16:58:26] 2026-01-10 15:57:21,900 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 16:58:26] 2026-01-10 15:57:21,900 | INFO     | update_server=False
[2026-01-10 16:58:26] 2026-01-10 15:57:21,901 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 16:58:26] 2026-01-10 15:57:21,901 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 16:58:26] 2026-01-10 15:57:21,901 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:58:26] 2026-01-10 15:57:21,901 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 16:58:26] 2026-01-10 15:57:21,901 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 16:58:26] 2026-01-10 15:57:21,901 | INFO     | aborting loop
[2026-01-10 16:58:26] 2026-01-10 15:57:22,528 | INFO     | all job control threads have been joined
[2026-01-10 16:58:26] 2026-01-10 15:57:22,906 | INFO     | [job] retrieve thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:22,907 | INFO     | [job] job monitor thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:22,908 | INFO     | [job] queue monitor thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:22,930 | INFO     | [payload] validate_post thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:22,953 | INFO     | all payload control threads have been joined
[2026-01-10 16:58:26] 2026-01-10 15:57:22,999 | INFO     | all data control threads have been joined
[2026-01-10 16:58:26] 2026-01-10 15:57:23,533 | INFO     | [job] control thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:23,599 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:23,651 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:23,818 | INFO     | [job] validate thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:23,820 | INFO     | [payload] failed_post thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:23,907 | INFO     | [data] copytool_out thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:23,959 | INFO     | [payload] control thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:24,005 | INFO     | [data] control thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:24,025 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:24,192 | INFO     | [data] copytool_in thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:25,908 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:32,232 | INFO     | job.realtimelogging is not enabled
[2026-01-10 16:58:26] 2026-01-10 15:57:33,237 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 16:58:26] 2026-01-10 15:57:52,435 | INFO     | PID=2904562 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 16:58:26] 2026-01-10 15:57:52,435 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 16:58:26] 2026-01-10 15:57:52,436 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 16:58:26] 2026-01-10 15:57:52,436 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 16:58:26] 2026-01-10 15:58:20,223 | INFO     | [monitor] cgroup control has ended
[2026-01-10 16:58:26] 2026-01-10 15:58:20,874 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140057261766464)>', '<ExcThread(monitor, started 140056769574656)>']
[2026-01-10 16:58:26] 2026-01-10 15:58:21,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 16:58:26] 2026-01-10 15:58:21,591 | INFO     | [monitor] control thread has ended
[2026-01-10 16:58:26] 2026-01-10 15:58:25,899 | INFO     | all workflow threads have been joined
[2026-01-10 16:58:26] 2026-01-10 15:58:25,899 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 16:58:26] 2026-01-10 15:58:25,900 | INFO     | traces error code: 0
[2026-01-10 16:58:26] 2026-01-10 15:58:25,900 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 16:58:26] 2026-01-10 15:58:25,947 [wrapper] ==== pilot stdout END ====
[2026-01-10 16:58:26] 2026-01-10 15:58:25,950 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 16:58:26] 2026-01-10 15:58:25,952 [wrapper] pilotpid: 2904562
[2026-01-10 16:58:26] 2026-01-10 15:58:25,955 [wrapper] Pilot exit status: 0
[2026-01-10 16:58:26] 2026-01-10 15:58:25,962 [wrapper] pandaids: 6963192147
[2026-01-10 16:58:26] 2026-01-10 15:58:25,979 [wrapper] cleanup supervisor_pilot 2926107 2904563
[2026-01-10 16:58:26] 2026-01-10 15:58:25,982 [wrapper] Test setup, not cleaning
[2026-01-10 16:58:26] 2026-01-10 15:58:25,984 [wrapper] apfmon messages muted
[2026-01-10 16:58:26] 2026-01-10 15:58:25,987 [wrapper] ==== wrapper stdout END ====
[2026-01-10 16:58:26] 2026-01-10 15:58:25,989 [wrapper] ==== wrapper stderr END ====
[2026-01-10 16:58:26]  *** Error codes and diagnostics ***
[2026-01-10 16:58:26]     "exeErrorCode": 0,
[2026-01-10 16:58:26]     "exeErrorDiag": "",
[2026-01-10 16:58:26]     "pilotErrorCode": 0,
[2026-01-10 16:58:26]     "pilotErrorDiag": "",
[2026-01-10 16:58:26]  *** Listing of results directory ***
[2026-01-10 16:58:26] total 441324
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 16:58:26] -rwx------ 1 boinc boinc     36322 Jan  9 05:25 runpilot2-wrapper.sh
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:30 queuedata.json
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc       100 Jan 10 14:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 16:58:26] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 14:50 run_atlas
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc       105 Jan 10 14:50 job.xml
[2026-01-10 16:58:26] -rw-r--r-- 2 boinc boinc 222638363 Jan 10 14:50 EVNT.47898824._001499.pool.root.1
[2026-01-10 16:58:26] -rw-r--r-- 2 boinc boinc    592397 Jan 10 14:50 input.tar.gz
[2026-01-10 16:58:26] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:50 start_atlas.sh
[2026-01-10 16:58:26] drwxrwx--x 2 boinc boinc      4096 Jan 10 14:50 shared
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:50 boinc_setup_complete
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc      6197 Jan 10 14:50 init_data.xml
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc         0 Jan 10 14:50 boinc_lockfile
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc      2520 Jan 10 14:50 pandaJob.out
[2026-01-10 16:58:26] -rw------- 1 boinc boinc    989556 Jan 10 14:51 agis_schedconf.cvmfs.json
[2026-01-10 16:58:26] -rw------- 1 boinc boinc   1516240 Jan 10 14:51 agis_ddmendpoints.agis.ALL.json
[2026-01-10 16:58:26] drwx------ 5 boinc boinc      4096 Jan 10 14:51 pilot3
[2026-01-10 16:58:26] -rw------- 1 boinc boinc 222582960 Jan 10 16:56 HITS.47898826._039015.pool.root.1
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc       530 Jan 10 16:56 boinc_task_state.xml
[2026-01-10 16:58:26] -rw------- 1 boinc boinc      1014 Jan 10 16:57 memory_monitor_summary.json
[2026-01-10 16:58:26] -rw------- 1 boinc boinc    296627 Jan 10 16:57 log.47898826._039015.job.log.tgz.1
[2026-01-10 16:58:26] -rw------- 1 boinc boinc      7748 Jan 10 16:57 heartbeat.json
[2026-01-10 16:58:26] -rw------- 1 boinc boinc        95 Jan 10 16:57 pilot_heartbeat.json
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc      8192 Jan 10 16:57 boinc_mmap_file
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc        27 Jan 10 16:58 wrapper_checkpoint.txt
[2026-01-10 16:58:26] -rw------- 1 boinc boinc      4824 Jan 10 16:58 pilotlog.txt
[2026-01-10 16:58:26] -rw------- 1 boinc boinc   1096419 Jan 10 16:58 log.47898826._039015.job.log.1
[2026-01-10 16:58:26] -rw------- 1 boinc boinc       357 Jan 10 16:58 output.list
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc       620 Jan 10 16:58 runtime_log
[2026-01-10 16:58:26] -rw------- 1 boinc boinc   1413120 Jan 10 16:58 result.tar.gz
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc      8897 Jan 10 16:58 runtime_log.err
[2026-01-10 16:58:26] -rw------- 1 boinc boinc       659 Jan 10 16:58 BxmKDmZFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLNmKDmkTN59n.diag
[2026-01-10 16:58:26] -rw-r--r-- 1 boinc boinc     12341 Jan 10 16:58 stderr.txt
[2026-01-10 16:58:26] HITS file was successfully produced:
[2026-01-10 16:58:26] -rw------- 1 boinc boinc 222582960 Jan 10 16:56 shared/HITS.pool.root.1
[2026-01-10 16:58:26]  *** Contents of shared directory: ***
[2026-01-10 16:58:26] total 436776
[2026-01-10 16:58:26] -rw-r--r-- 2 boinc boinc 222638363 Jan 10 14:50 ATLAS.root_0
[2026-01-10 16:58:26] -rw-r--r-- 2 boinc boinc    592397 Jan 10 14:50 input.tar.gz
[2026-01-10 16:58:26] -rw-r--r-- 2 boinc boinc     15847 Jan 10 14:50 start_atlas.sh
[2026-01-10 16:58:26] -rw------- 1 boinc boinc 222582960 Jan 10 16:56 HITS.pool.root.1
[2026-01-10 16:58:26] -rw------- 1 boinc boinc   1413120 Jan 10 16:58 result.tar.gz
16:58:28 (2900833): run_atlas exited; CPU time 21991.063942
16:58:28 (2900833): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN