Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:25:01 (3854389): wrapper (7.7.26015): starting
16:25:01 (3854389): wrapper: running run_atlas (--nthreads 3)
[2026-01-10 16:25:01] Arguments: --nthreads 3
[2026-01-10 16:25:01] Threads: 3
[2026-01-10 16:25:01] Checking for CVMFS
[2026-01-10 16:25:01] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 16:25:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 16:25:01] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 16:25:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 16:25:01] 2.9.2.0 2917002 3991 84764 154984 1 56 35983061 36864000 0 130560 0 2471910 99.988 144114 3420 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-01-10 16:25:01] CVMFS is ok
[2026-01-10 16:25:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 16:25:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 16:25:01] Further information can be found at the LHC@home message board.
[2026-01-10 16:25:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 16:25:01] Checking for apptainer binary...
[2026-01-10 16:25:01] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 16:25:01] Running /usr/bin/apptainer --version
[2026-01-10 16:25:01] apptainer version 1.4.1-1.1
[2026-01-10 16:25:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 16:25:01] thA331b
[2026-01-10 16:25:01] apptainer works
[2026-01-10 16:25:01] Set ATHENA_PROC_NUMBER=3
[2026-01-10 16:25:01] Set ATHENA_CORE_NUMBER=3
[2026-01-10 16:25:02] Starting ATLAS job with PandaID=6963587912
[2026-01-10 16:25:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 18:19:27]  *** The last 200 lines of the pilot log: ***
[2026-01-10 18:19:27] 2026-01-10 17:19:08,878 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 18:19:27] 2026-01-10 17:19:08,878 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:19:27] 2026-01-10 17:19:08,991 | INFO     | all job control threads have been joined
[2026-01-10 18:19:27] 2026-01-10 17:19:09,111 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 18:19:27] 2026-01-10 17:19:09,193 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 18:19:27] 2026-01-10 17:19:09,193 | INFO     | aborting loop
[2026-01-10 18:19:27] 2026-01-10 17:19:09,497 | INFO     | all data control threads have been joined
[2026-01-10 18:19:27] 2026-01-10 17:19:09,883 | INFO     | [job] retrieve thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:09,883 | INFO     | [job] queue monitor thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:09,894 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:09,898 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:09,950 | INFO     | all payload control threads have been joined
[2026-01-10 18:19:27] 2026-01-10 17:19:09,975 | INFO     | [payload] failed_post thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:09,997 | INFO     | [job] control thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:10,199 | INFO     | [job] job monitor thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:10,502 | INFO     | [data] control thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:10,562 | INFO     | [payload] validate_post thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:10,767 | INFO     | [data] copytool_in thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:10,845 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:10,956 | INFO     | [payload] control thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:11,117 | INFO     | [data] copytool_out thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:11,303 | INFO     | [job] validate thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:11,636 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 18:19:27] 2026-01-10 17:19:15,162 | INFO     | [monitor] cgroup control has ended
[2026-01-10 18:19:27] 2026-01-10 17:19:15,643 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:19,563 | INFO     | job.realtimelogging is not enabled
[2026-01-10 18:19:27] 2026-01-10 17:19:20,569 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 18:19:27] 2026-01-10 17:19:21,953 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139788483376960)>', '<ExcThread(monitor, started 139787688208128)>']
[2026-01-10 18:19:27] 2026-01-10 17:19:22,952 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 18:19:27] 2026-01-10 17:19:22,952 | INFO     | [monitor] control thread has ended
[2026-01-10 18:19:27] 2026-01-10 17:19:26,979 | INFO     | all workflow threads have been joined
[2026-01-10 18:19:27] 2026-01-10 17:19:26,979 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 18:19:27] 2026-01-10 17:19:26,980 | INFO     | traces error code: 0
[2026-01-10 18:19:27] 2026-01-10 17:19:26,980 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 18:19:27] 2026-01-10 17:19:27,030 [wrapper] ==== pilot stdout END ====
[2026-01-10 18:19:27] 2026-01-10 17:19:27,033 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 18:19:27] 2026-01-10 17:19:27,035 [wrapper] pilotpid: 3858117
[2026-01-10 18:19:27] 2026-01-10 17:19:27,037 [wrapper] Pilot exit status: 0
[2026-01-10 18:19:27] 2026-01-10 17:19:27,044 [wrapper] pandaids: 6963587912
[2026-01-10 18:19:27] 2026-01-10 17:19:27,060 [wrapper] cleanup supervisor_pilot 3878940 3858118
[2026-01-10 18:19:27] 2026-01-10 17:19:27,062 [wrapper] Test setup, not cleaning
[2026-01-10 18:19:27] 2026-01-10 17:19:27,065 [wrapper] apfmon messages muted
[2026-01-10 18:19:27] 2026-01-10 17:19:27,067 [wrapper] ==== wrapper stdout END ====
[2026-01-10 18:19:27] 2026-01-10 17:19:27,069 [wrapper] ==== wrapper stderr END ====
[2026-01-10 18:19:27]  *** Error codes and diagnostics ***
[2026-01-10 18:19:27]     "exeErrorCode": 0,
[2026-01-10 18:19:27]     "exeErrorDiag": "",
[2026-01-10 18:19:27]     "pilotErrorCode": 0,
[2026-01-10 18:19:27]     "pilotErrorDiag": "",
[2026-01-10 18:19:27]  *** Listing of results directory ***
[2026-01-10 18:19:27] total 440732
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 18:19:27] -rwx------ 1 boinc boinc     36322 Jan  9 05:23 runpilot2-wrapper.sh
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:26 queuedata.json
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc       100 Jan 10 16:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 18:19:27] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 16:25 run_atlas
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc       105 Jan 10 16:25 job.xml
[2026-01-10 18:19:27] -rw-r--r-- 2 boinc boinc 222889343 Jan 10 16:25 EVNT.47898824._000507.pool.root.1
[2026-01-10 18:19:27] -rw-r--r-- 2 boinc boinc    592406 Jan 10 16:25 input.tar.gz
[2026-01-10 18:19:27] -rw-r--r-- 2 boinc boinc     15847 Jan 10 16:25 start_atlas.sh
[2026-01-10 18:19:27] drwxrwx--x 2 boinc boinc      4096 Jan 10 16:25 shared
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc         0 Jan 10 16:25 boinc_setup_complete
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc      6441 Jan 10 16:25 init_data.xml
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc         0 Jan 10 16:25 boinc_lockfile
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc      2517 Jan 10 16:25 pandaJob.out
[2026-01-10 18:19:27] -rw------- 1 boinc boinc    989556 Jan 10 16:25 agis_schedconf.cvmfs.json
[2026-01-10 18:19:27] -rw------- 1 boinc boinc   1516240 Jan 10 16:25 agis_ddmendpoints.agis.ALL.json
[2026-01-10 18:19:27] drwx------ 5 boinc boinc      4096 Jan 10 16:25 pilot3
[2026-01-10 18:19:27] -rw------- 1 boinc boinc        95 Jan 10 18:18 pilot_heartbeat.json
[2026-01-10 18:19:27] -rw------- 1 boinc boinc 221975026 Jan 10 18:18 HITS.47898826._039674.pool.root.1
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc       530 Jan 10 18:18 boinc_task_state.xml
[2026-01-10 18:19:27] -rw------- 1 boinc boinc      1016 Jan 10 18:18 memory_monitor_summary.json
[2026-01-10 18:19:27] -rw------- 1 boinc boinc    289054 Jan 10 18:19 log.47898826._039674.job.log.tgz.1
[2026-01-10 18:19:27] -rw------- 1 boinc boinc      7753 Jan 10 18:19 heartbeat.json
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc      8192 Jan 10 18:19 boinc_mmap_file
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc        27 Jan 10 18:19 wrapper_checkpoint.txt
[2026-01-10 18:19:27] -rw------- 1 boinc boinc      4628 Jan 10 18:19 pilotlog.txt
[2026-01-10 18:19:27] -rw------- 1 boinc boinc    986245 Jan 10 18:19 log.47898826._039674.job.log.1
[2026-01-10 18:19:27] -rw------- 1 boinc boinc       357 Jan 10 18:19 output.list
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc       620 Jan 10 18:19 runtime_log
[2026-01-10 18:19:27] -rw------- 1 boinc boinc   1290240 Jan 10 18:19 result.tar.gz
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc      8902 Jan 10 18:19 runtime_log.err
[2026-01-10 18:19:27] -rw------- 1 boinc boinc       660 Jan 10 18:19 3ZVMDmHDJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTGmKDmP84kjm.diag
[2026-01-10 18:19:27] -rw-r--r-- 1 boinc boinc      6849 Jan 10 18:19 stderr.txt
[2026-01-10 18:19:27] HITS file was successfully produced:
[2026-01-10 18:19:27] -rw------- 1 boinc boinc 221975026 Jan 10 18:18 shared/HITS.pool.root.1
[2026-01-10 18:19:27]  *** Contents of shared directory: ***
[2026-01-10 18:19:27] total 436308
[2026-01-10 18:19:27] -rw-r--r-- 2 boinc boinc 222889343 Jan 10 16:25 ATLAS.root_0
[2026-01-10 18:19:27] -rw-r--r-- 2 boinc boinc    592406 Jan 10 16:25 input.tar.gz
[2026-01-10 18:19:27] -rw-r--r-- 2 boinc boinc     15847 Jan 10 16:25 start_atlas.sh
[2026-01-10 18:19:27] -rw------- 1 boinc boinc 221975026 Jan 10 18:18 HITS.pool.root.1
[2026-01-10 18:19:27] -rw------- 1 boinc boinc   1290240 Jan 10 18:19 result.tar.gz
18:19:28 (3854389): run_atlas exited; CPU time 19828.304474
18:19:28 (3854389): called boinc_finish(0)

</stderr_txt>
]]>

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