Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:43:06 (26898): wrapper (7.7.26015): starting
23:43:06 (26898): wrapper: running run_atlas (--nthreads 8)
[2026-01-09 23:43:06] Arguments: --nthreads 8
[2026-01-09 23:43:06] Threads: 8
[2026-01-09 23:43:06] Checking for CVMFS
[2026-01-09 23:43:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-09 23:43:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-09 23:43:06] Running cvmfs_config stat atlas.cern.ch
[2026-01-09 23:43:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-09 23:43:06] 2.11.0.0 4550 129524 122424 154959 2 1 3095607 4096000 1 130560 3 18315526 99.710 12026074 672 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-01-09 23:43:06] CVMFS is ok
[2026-01-09 23:43:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-09 23:43:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-09 23:43:06] Further information can be found at the LHC@home message board.
[2026-01-09 23:43:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-09 23:43:06] Checking for apptainer binary...
[2026-01-09 23:43:06] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-01-09 23:43:06] apptainer is not installed, using version from CVMFS
[2026-01-09 23:43:06] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-09 23:43:26] WARNING: Environment variable TMPDIR already has value [/tmp/job_11009455/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node024
[2026-01-09 23:43:26] apptainer works
[2026-01-09 23:43:26] Set ATHENA_PROC_NUMBER=8
[2026-01-09 23:43:26] Set ATHENA_CORE_NUMBER=8
[2026-01-09 23:43:26] Starting ATLAS job with PandaID=6963192173
[2026-01-09 23:43:26] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11009455/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 00:55:57]  *** The last 200 lines of the pilot log: ***
[2026-01-10 00:55:57]  mtime=0
[2026-01-10 00:55:57]  protocol_id=None
[2026-01-10 00:55:57]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-01-10 00:55:57]  replicas=None
[2026-01-10 00:55:57]  scope=mc23_13p6TeV
[2026-01-10 00:55:57]  status=None
[2026-01-10 00:55:57]  status_code=0
[2026-01-10 00:55:57]  storage_token=
[2026-01-10 00:55:57]  surl=/tmp/job_11009455/atlas/pilot/slots/0/PanDA_Pilot-6963192173/log.47898826._039041.job.log.tgz.1
[2026-01-10 00:55:57]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/24/log.47898826._039041.job.log.tgz.1
[2026-01-10 00:55:57]  workdir=None
[2026-01-10 00:55:57] ]
[2026-01-10 00:55:57] 2026-01-09 23:55:21,789 | INFO     | transferring file log.47898826._039041.job.log.tgz.1 from /tmp/job_11009455/atlas/pilot/slots/0/PanDA_Pilot-6963192173/log.47898826._039041.job.log.tgz.1 to /tmp/j
[2026-01-10 00:55:57] 2026-01-09 23:55:21,790 | INFO     | executing command: /usr/bin/env mv /tmp/job_11009455/atlas/pilot/slots/0/PanDA_Pilot-6963192173/log.47898826._039041.job.log.tgz.1 /tmp/job_11009455/atlas/pilot/sl
[2026-01-10 00:55:57] 2026-01-09 23:55:21,799 | INFO     | adding to output.list: log.47898826._039041.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/32/24/log.47898826._039041.job.log.tg
[2026-01-10 00:55:57] 2026-01-09 23:55:21,799 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-01-10 00:55:57] 2026-01-09 23:55:21,799 | INFO     | summary of transferred files:
[2026-01-10 00:55:57] 2026-01-09 23:55:21,799 | INFO     |  -- lfn=log.47898826._039041.job.log.tgz.1, status_code=0, status=transferred
[2026-01-10 00:55:57] 2026-01-09 23:55:21,799 | INFO     | stage-out finished correctly
[2026-01-10 00:55:57] 2026-01-09 23:55:22,718 | INFO     | PID=8173 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 00:55:57] 2026-01-09 23:55:22,718 | INFO     | .. there are 6 such processes running
[2026-01-10 00:55:57] 2026-01-09 23:55:22,755 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-01-10 00:55:57] 2026-01-09 23:55:22,802 | INFO     | job 6963192173 has state=finished
[2026-01-10 00:55:57] 2026-01-09 23:55:22,803 | INFO     | preparing for final server update for job 6963192173 in state='finished'
[2026-01-10 00:55:57] 2026-01-09 23:55:22,803 | INFO     | this job has now completed (state=finished)
[2026-01-10 00:55:57] 2026-01-09 23:55:22,803 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-01-10 00:55:57] 2026-01-09 23:55:22,803 | INFO     | log transfer has been attempted: DONE
[2026-01-10 00:55:57] 2026-01-09 23:55:22,803 | INFO     | job 6963192173 has finished - writing final server update
[2026-01-10 00:55:57] 2026-01-09 23:55:22,803 | INFO     | total number of processed events: 400 (read)
[2026-01-10 00:55:57] 2026-01-09 23:55:22,803 | INFO     | executing command: lscpu
[2026-01-10 00:55:57] 2026-01-09 23:55:22,834 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2026-01-10 00:55:57] 2026-01-09 23:55:23,719 | INFO     | time since job start (4262s) is within the limit (349056.0s)
[2026-01-10 00:55:57] 2026-01-09 23:55:24,442 | INFO     | CPU arch script returned: x86-64-v3
[2026-01-10 00:55:57] 2026-01-09 23:55:24,449 | INFO     | found 64 cores (32 cores per socket, 2 sockets) , CPU MHz: 2644.64709375
[2026-01-10 00:55:57] 2026-01-09 23:55:24,468 | INFO     | using path: /tmp/job_11009455/atlas/pilot/slots/0/PanDA_Pilot-6963192173/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 00:55:57] 2026-01-09 23:55:24,469 | INFO     | extracted standard info from prmon json
[2026-01-10 00:55:57] 2026-01-09 23:55:24,469 | INFO     | extracted standard memory fields from prmon json
[2026-01-10 00:55:57] 2026-01-09 23:55:24,469 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-01-10 00:55:57] 2026-01-09 23:55:24,469 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-01-10 00:55:57] 2026-01-09 23:55:24,469 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-01-10 00:55:57] 2026-01-09 23:55:24,470 | INFO     | fitting pss+swap vs Time
[2026-01-10 00:55:57] 2026-01-09 23:55:24,470 | INFO     | sum of square deviations: 73882315.5
[2026-01-10 00:55:57] 2026-01-09 23:55:24,470 | INFO     | sum of deviations: 9411632355.000002
[2026-01-10 00:55:57] 2026-01-09 23:55:24,470 | INFO     | mean x: 1768000875.5
[2026-01-10 00:55:57] 2026-01-09 23:55:24,470 | INFO     | mean y: 2435232.935483871
[2026-01-10 00:55:57] 2026-01-09 23:55:24,470 | INFO     | intersect: -225217553216.45374
[2026-01-10 00:55:57] 2026-01-09 23:55:24,470 | INFO     | chi2: 0.9110497415298918
[2026-01-10 00:55:57] 2026-01-09 23:55:24,470 | INFO     | current memory leak: 127.39 B/s (using 62 data points, chi2=0.91)
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | could have reported an average CPU frequency of 2753 MHz (6 samples)
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | ..............................
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | . Timing measurements:
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | . get job = 0 s
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | . initial setup = 4 s
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | . payload setup = 31 s
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | . stage-in = 0 s
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | . payload execution = 4211 s
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | . stage-out = 0 s
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | . log creation = 0 s
[2026-01-10 00:55:57] 2026-01-09 23:55:24,471 | INFO     | ..............................
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | 
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | job summary report
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | --------------------------------------------------
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | PanDA job id: 6963192173
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | task id: 47898826
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | errors: (none)
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | status: LOG_TRANSFER = DONE 
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | pilot state: finished 
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | transexitcode: 0
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | exeerrorcode: 0
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | exeerrordiag: 
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | exitcode: 0
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | exitmsg: OK
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | cpuconsumptiontime: 27818 s
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | nevents: 400
[2026-01-10 00:55:57] 2026-01-09 23:55:24,520 | INFO     | neventsw: 0
[2026-01-10 00:55:57] 2026-01-09 23:55:24,521 | INFO     | pid: 29527
[2026-01-10 00:55:57] 2026-01-09 23:55:24,521 | INFO     | pgrp: 29527
[2026-01-10 00:55:57] 2026-01-09 23:55:24,521 | INFO     | corecount: 8
[2026-01-10 00:55:57] 2026-01-09 23:55:24,521 | INFO     | event service: False
[2026-01-10 00:55:57] 2026-01-09 23:55:24,521 | INFO     | sizes: {0: 2284097, 2: 2284359, 11: 2284387, 4246: 2310331, 4247: 2319359, 4248: 2319415, 4250: 2319737}
[2026-01-10 00:55:57] 2026-01-09 23:55:24,521 | INFO     | --------------------------------------------------
[2026-01-10 00:55:57] 2026-01-09 23:55:24,521 | INFO     | 
[2026-01-10 00:55:57] 2026-01-09 23:55:24,521 | INFO     | executing command: ls -lF /tmp/job_11009455/atlas/pilot/slots/0
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue jobs had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue payloads had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue data_in had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue data_out had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,530 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,530 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,530 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 00:55:57] 2026-01-09 23:55:24,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,530 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 00:55:57] 2026-01-09 23:55:24,530 | INFO     | job 6963192173 has completed (purged errors)
[2026-01-10 00:55:57] 2026-01-09 23:55:24,530 | INFO     | overall cleanup function is called
[2026-01-10 00:55:57] 2026-01-09 23:55:24,603 | WARNING  | process 29527 can no longer be monitored (due to stat problems) - aborting
[2026-01-10 00:55:57] 2026-01-09 23:55:24,687 | INFO     | using path: /tmp/job_11009455/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-01-10 00:55:57] 2026-01-09 23:55:24,789 | INFO     | number of running child processes to parent process 29527: 1
[2026-01-10 00:55:57] 2026-01-09 23:55:24,790 | INFO     | maximum number of monitored processes: 7
[2026-01-10 00:55:57] 2026-01-09 23:55:24,790 | INFO     | aborting job monitoring since job object (job id=6963192173) has expired
[2026-01-10 00:55:57] 2026-01-09 23:55:25,536 | INFO     | --- collectZombieJob: --- 10, [29527]
[2026-01-10 00:55:57] 2026-01-09 23:55:25,536 | INFO     | zombie collector waiting for pid 29527
[2026-01-10 00:55:57] 2026-01-09 23:55:25,536 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 00:55:57] 2026-01-09 23:55:25,536 | INFO     | collected zombie processes
[2026-01-10 00:55:57] 2026-01-09 23:55:25,536 | INFO     | will attempt to kill all subprocesses of pid=29527
[2026-01-10 00:55:57] 2026-01-09 23:55:25,638 | INFO     | process IDs to be killed: [29527] (in reverse order)
[2026-01-10 00:55:57] 2026-01-09 23:55:25,676 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 00:55:57] 2026-01-09 23:55:25,676 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 00:55:57] 2026-01-09 23:55:25,680 | INFO     | did not find any defunct processes belonging to 29527
[2026-01-10 00:55:57] 2026-01-09 23:55:25,683 | INFO     | did not find any defunct processes belonging to 29527
[2026-01-10 00:55:57] 2026-01-09 23:55:25,683 | INFO     | ready for new job
[2026-01-10 00:55:57] 2026-01-09 23:55:25,683 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 00:55:57] 2026-01-09 23:55:25,684 | INFO     | ***************************************
[2026-01-10 00:55:57] 2026-01-09 23:55:25,684 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 00:55:57] 2026-01-09 23:55:25,684 | INFO     | ***************************************
[2026-01-10 00:55:57] 2026-01-09 23:55:25,684 | INFO     | 
[2026-01-10 00:55:57] 2026-01-09 23:55:25,698 | INFO     | architecture information:
[2026-01-10 00:55:57] 2026-01-09 23:55:25,698 | INFO     | executing command: cat /etc/os-release
[2026-01-10 00:55:57] 2026-01-09 23:55:25,704 | INFO     | cat /etc/os-release:
[2026-01-10 00:55:57] NAME="CentOS Linux"
[2026-01-10 00:55:57] VERSION="7 (Core)"
[2026-01-10 00:55:57] ID="centos"
[2026-01-10 00:55:57] ID_LIKE="rhel fedora"
[2026-01-10 00:55:57] VERSION_ID="7"
[2026-01-10 00:55:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 00:55:57] ANSI_COLOR="0;31"
[2026-01-10 00:55:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 00:55:57] HOME_URL="https://www.centos.org/"
[2026-01-10 00:55:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 00:55:57] 
[2026-01-10 00:55:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 00:55:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 00:55:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 00:55:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 00:55:57] 
[2026-01-10 00:55:57] 2026-01-09 23:55:25,704 | INFO     | ***************************************
[2026-01-10 00:55:57] 2026-01-09 23:55:26,207 | INFO     | executing command: df -mP /tmp/job_11009455/atlas/pilot/slots/0
[2026-01-10 00:55:57] 2026-01-09 23:55:26,213 | INFO     | sufficient remaining disk space (224761217024 B)
[2026-01-10 00:55:57] 2026-01-09 23:55:26,213 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 00:55:57] 2026-01-09 23:55:26,213 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 00:55:57] 2026-01-09 23:55:26,213 | INFO     | update_server=False
[2026-01-10 00:55:57] 2026-01-09 23:55:26,213 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 00:55:57] 2026-01-09 23:55:26,213 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:55:57] 2026-01-09 23:55:26,213 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 00:55:57] 2026-01-09 23:55:26,214 | INFO     | aborting loop
[2026-01-10 00:55:57] 2026-01-09 23:55:26,753 | INFO     | all job control threads have been joined
[2026-01-10 00:55:57] 2026-01-09 23:55:26,854 | INFO     | all data control threads have been joined
[2026-01-10 00:55:57] 2026-01-09 23:55:26,953 | INFO     | job.realtimelogging is not enabled
[2026-01-10 00:55:57] 2026-01-09 23:55:27,218 | INFO     | [job] retrieve thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:27,219 | INFO     | [job] queue monitor thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:27,219 | INFO     | [job] job monitor thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:27,337 | INFO     | [payload] failed_post thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:27,357 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 00:55:57] 2026-01-09 23:55:27,396 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:27,506 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:27,603 | INFO     | all payload control threads have been joined
[2026-01-10 00:55:57] 2026-01-09 23:55:27,758 | INFO     | [job] control thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:27,841 | INFO     | [monitor] cgroup control has ended
[2026-01-10 00:55:57] 2026-01-09 23:55:27,859 | INFO     | [data] control thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:27,949 | INFO     | [data] copytool_in thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:27,951 | INFO     | [payload] validate_post thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:27,958 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:28,608 | INFO     | [payload] control thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:28,639 | INFO     | [job] validate thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:28,709 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:28,808 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 00:55:57] 2026-01-09 23:55:29,362 | INFO     | [data] copytool_out thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:32,813 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 00:55:57] 2026-01-09 23:55:33,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065021696)>']
[2026-01-10 00:55:57] 2026-01-09 23:55:38,092 | INFO     | all workflow threads have been joined
[2026-01-10 00:55:57] 2026-01-09 23:55:38,092 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 00:55:57] 2026-01-09 23:55:38,092 | INFO     | traces error code: 0
[2026-01-10 00:55:57] 2026-01-09 23:55:38,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 00:55:57] 2026-01-09 23:55:56,912 | INFO     | PID=8173 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-01-10 00:55:57] 2026-01-09 23:55:56,912 | INFO     | .. there are 5 such processes running
[2026-01-10 00:55:57] 2026-01-09 23:55:56,912 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 00:55:57] 2026-01-09 23:55:56,912 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 00:55:57] 2026-01-09 23:55:56,912 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 00:55:57] 2026-01-09 23:55:56,912 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 00:55:57] 2026-01-09 23:55:56,912 | INFO     | [monitor] control thread has ended
[2026-01-10 00:55:57] 2026-01-09 23:55:56,965 [wrapper] ==== pilot stdout END ====
[2026-01-10 00:55:57] 2026-01-09 23:55:56,966 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 00:55:57] 2026-01-09 23:55:56,968 [wrapper] pilotpid: 8173
[2026-01-10 00:55:57] 2026-01-09 23:55:56,969 [wrapper] Pilot exit status: 0
[2026-01-10 00:55:57] 2026-01-09 23:55:56,973 [wrapper] pandaids: 6963192173
[2026-01-10 00:55:57] 2026-01-09 23:55:56,996 [wrapper] cleanup supervisor_pilot 13989 8183
[2026-01-10 00:55:57] 2026-01-09 23:55:56,998 [wrapper] Test setup, not cleaning
[2026-01-10 00:55:57] 2026-01-09 23:55:56,999 [wrapper] apfmon messages muted
[2026-01-10 00:55:57] 2026-01-09 23:55:57,000 [wrapper] ==== wrapper stdout END ====
[2026-01-10 00:55:57] 2026-01-09 23:55:57,001 [wrapper] ==== wrapper stderr END ====
[2026-01-10 00:55:57]  *** Error codes and diagnostics ***
[2026-01-10 00:55:57]     "exeErrorCode": 0,
[2026-01-10 00:55:57]     "exeErrorDiag": "",
[2026-01-10 00:55:57]     "pilotErrorCode": 0,
[2026-01-10 00:55:57]     "pilotErrorDiag": "",
[2026-01-10 00:55:57]  *** Listing of results directory ***
[2026-01-10 00:55:57] total 442412
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 00:55:57] -rwx------ 1 mf493845 unix-user     36322 Jan  9 05:25 runpilot2-wrapper.sh
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user      5112 Jan  9 05:30 queuedata.json
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user       100 Jan  9 22:45 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 00:55:57] -rwxr-xr-x 1 mf493845 unix-user      7986 Jan  9 22:45 run_atlas
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user       105 Jan  9 22:45 job.xml
[2026-01-10 00:55:57] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  9 23:43 start_atlas.sh
[2026-01-10 00:55:57] drwxrwx--x 2 mf493845 unix-user       100 Jan  9 23:43 shared
[2026-01-10 00:55:57] -rw-r--r-- 2 mf493845 unix-user    592404 Jan  9 23:43 input.tar.gz
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user      6389 Jan  9 23:43 init_data.xml
[2026-01-10 00:55:57] -rw-r--r-- 2 mf493845 unix-user 224369758 Jan  9 23:43 EVNT.47898824._001500.pool.root.1
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user         0 Jan  9 23:43 boinc_setup_complete
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user      8192 Jan  9 23:43 boinc_mmap_file
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user         0 Jan  9 23:43 boinc_lockfile
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user      2520 Jan  9 23:43 pandaJob.out
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user    989375 Jan  9 23:44 agis_schedconf.cvmfs.json
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user   1516240 Jan  9 23:44 agis_ddmendpoints.agis.ALL.json
[2026-01-10 00:55:57] drwx------ 5 mf493845 unix-user       440 Jan  9 23:44 pilot3
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user 222826716 Jan 10 00:54 HITS.47898826._039041.pool.root.1
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user        95 Jan 10 00:55 pilot_heartbeat.json
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user      1017 Jan 10 00:55 memory_monitor_summary.json
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user    324787 Jan 10 00:55 log.47898826._039041.job.log.tgz.1
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user      7778 Jan 10 00:55 heartbeat.json
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user       819 Jan 10 00:55 pilotlog.txt
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user    649095 Jan 10 00:55 log.47898826._039041.job.log.1
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user       357 Jan 10 00:55 output.list
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user       620 Jan 10 00:55 runtime_log
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user    993280 Jan 10 00:55 result.tar.gz
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user      9220 Jan 10 00:55 runtime_log.err
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user       643 Jan 10 00:55 lT1KDmZFJy8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTNmKDmNdplSo.diag
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user     22278 Jan 10 00:55 stderr.txt
[2026-01-10 00:55:57] HITS file was successfully produced:
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user 222826716 Jan 10 00:54 shared/HITS.pool.root.1
[2026-01-10 00:55:57]  *** Contents of shared directory: ***
[2026-01-10 00:55:57] total 438288
[2026-01-10 00:55:57] -rw-r--r-- 2 mf493845 unix-user     15847 Jan  9 23:43 start_atlas.sh
[2026-01-10 00:55:57] -rw-r--r-- 2 mf493845 unix-user    592404 Jan  9 23:43 input.tar.gz
[2026-01-10 00:55:57] -rw-r--r-- 2 mf493845 unix-user 224369758 Jan  9 23:43 ATLAS.root_0
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user 222826716 Jan 10 00:54 HITS.pool.root.1
[2026-01-10 00:55:57] -rw------- 1 mf493845 unix-user    993280 Jan 10 00:55 result.tar.gz
00:55:58 (26898): run_atlas exited; CPU time 27878.887705
00:55:58 (26898): called boinc_finish(0)

</stderr_txt>
]]>

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