Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:40:32 (1675669): wrapper (7.7.26015): starting
11:40:32 (1675669): wrapper: running run_atlas (--nthreads 4)
[2026-01-10 11:40:32] Arguments: --nthreads 4
[2026-01-10 11:40:32] Threads: 4
[2026-01-10 11:40:32] Checking for CVMFS
[2026-01-10 11:40:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-01-10 11:40:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-01-10 11:40:32] Running cvmfs_config stat atlas.cern.ch
[2026-01-10 11:40:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-01-10 11:40:32] 2.9.2.0 569242 4004 96468 154976 3 57 21252368 36864000 0 130560 0 2943944 99.989 147241 4698 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://128.142.248.156:3126 1
[2026-01-10 11:40:32] CVMFS is ok
[2026-01-10 11:40:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-01-10 11:40:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-01-10 11:40:32] Further information can be found at the LHC@home message board.
[2026-01-10 11:40:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-01-10 11:40:32] Checking for apptainer binary...
[2026-01-10 11:40:32] Using apptainer found in PATH at /usr/bin/apptainer
[2026-01-10 11:40:32] Running /usr/bin/apptainer --version
[2026-01-10 11:40:32] apptainer version 1.4.1-1.1
[2026-01-10 11:40:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-01-10 11:40:32] thA369a
[2026-01-10 11:40:32] apptainer works
[2026-01-10 11:40:32] Set ATHENA_PROC_NUMBER=4
[2026-01-10 11:40:32] Set ATHENA_CORE_NUMBER=4
[2026-01-10 11:40:32] Starting ATLAS job with PandaID=6963189009
[2026-01-10 11:40:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-01-10 13:05:51]  *** The last 200 lines of the pilot log: ***
[2026-01-10 13:05:51] 2026-01-10 12:05:19,658 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-01-10 13:05:51] 2026-01-10 12:05:19,658 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-01-10 13:05:51] 2026-01-10 12:05:19,658 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-01-10 13:05:51] 2026-01-10 12:05:19,658 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-01-10 13:05:51] 2026-01-10 12:05:19,658 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-01-10 13:05:51] 2026-01-10 12:05:19,658 | INFO     | queue completed_jobids has 1 job(s)
[2026-01-10 13:05:51] 2026-01-10 12:05:19,658 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-01-10 13:05:51] 2026-01-10 12:05:19,658 | INFO     | queue messages had 0 job(s) [purged]
[2026-01-10 13:05:51] 2026-01-10 12:05:19,659 | INFO     | job 6963189009 has completed (purged errors)
[2026-01-10 13:05:51] 2026-01-10 12:05:19,659 | INFO     | overall cleanup function is called
[2026-01-10 13:05:51] 2026-01-10 12:05:20,665 | INFO     | --- collectZombieJob: --- 10, [1685994]
[2026-01-10 13:05:51] 2026-01-10 12:05:20,665 | INFO     | zombie collector waiting for pid 1685994
[2026-01-10 13:05:51] 2026-01-10 12:05:20,665 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-01-10 13:05:51] 2026-01-10 12:05:20,666 | INFO     | collected zombie processes
[2026-01-10 13:05:51] 2026-01-10 12:05:20,666 | INFO     | will attempt to kill all subprocesses of pid=1685994
[2026-01-10 13:05:51] 2026-01-10 12:05:20,710 | INFO     | process IDs to be killed: [1685994] (in reverse order)
[2026-01-10 13:05:51] 2026-01-10 12:05:20,736 | WARNING  | found no corresponding commands to process id(s)
[2026-01-10 13:05:51] 2026-01-10 12:05:20,736 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-01-10 13:05:51] 2026-01-10 12:05:20,737 | INFO     | did not find any defunct processes belonging to 1685994
[2026-01-10 13:05:51] 2026-01-10 12:05:20,738 | INFO     | did not find any defunct processes belonging to 1685994
[2026-01-10 13:05:51] 2026-01-10 12:05:20,739 | INFO     | ready for new job
[2026-01-10 13:05:51] 2026-01-10 12:05:20,739 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-01-10 13:05:51] 2026-01-10 12:05:20,739 | INFO     | ***************************************
[2026-01-10 13:05:51] 2026-01-10 12:05:20,739 | INFO     | ***  PanDA Pilot version 3.11.2.19  ***
[2026-01-10 13:05:51] 2026-01-10 12:05:20,739 | INFO     | ***************************************
[2026-01-10 13:05:51] 2026-01-10 12:05:20,739 | INFO     | 
[2026-01-10 13:05:51] 2026-01-10 12:05:20,740 | INFO     | architecture information:
[2026-01-10 13:05:51] 2026-01-10 12:05:20,740 | INFO     | executing command: cat /etc/os-release
[2026-01-10 13:05:51] 2026-01-10 12:05:20,748 | INFO     | cat /etc/os-release:
[2026-01-10 13:05:51] NAME="CentOS Linux"
[2026-01-10 13:05:51] VERSION="7 (Core)"
[2026-01-10 13:05:51] ID="centos"
[2026-01-10 13:05:51] ID_LIKE="rhel fedora"
[2026-01-10 13:05:51] VERSION_ID="7"
[2026-01-10 13:05:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-01-10 13:05:51] ANSI_COLOR="0;31"
[2026-01-10 13:05:51] CPE_NAME="cpe:/o:centos:centos:7"
[2026-01-10 13:05:51] HOME_URL="https://www.centos.org/"
[2026-01-10 13:05:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-01-10 13:05:51] 
[2026-01-10 13:05:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-01-10 13:05:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-01-10 13:05:51] REDHAT_SUPPORT_PRODUCT="centos"
[2026-01-10 13:05:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-01-10 13:05:51] 
[2026-01-10 13:05:51] 2026-01-10 12:05:20,749 | INFO     | ***************************************
[2026-01-10 13:05:51] 2026-01-10 12:05:21,252 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-01-10 13:05:51] 2026-01-10 12:05:21,264 | INFO     | sufficient remaining disk space (239775776768 B)
[2026-01-10 13:05:51] 2026-01-10 12:05:21,265 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-01-10 13:05:51] 2026-01-10 12:05:21,265 | INFO     | current server update state: UPDATING_FINAL
[2026-01-10 13:05:51] 2026-01-10 12:05:21,265 | INFO     | update_server=False
[2026-01-10 13:05:51] 2026-01-10 12:05:21,265 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-01-10 13:05:51] 2026-01-10 12:05:21,265 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:05:51] 2026-01-10 12:05:21,397 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-01-10 13:05:51] 2026-01-10 12:05:21,489 | INFO     | all payload control threads have been joined
[2026-01-10 13:05:51] 2026-01-10 12:05:21,599 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-01-10 13:05:51] 2026-01-10 12:05:21,780 | INFO     | all data control threads have been joined
[2026-01-10 13:05:51] 2026-01-10 12:05:22,268 | INFO     | [job] retrieve thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:22,269 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-01-10 13:05:51] 2026-01-10 12:05:22,269 | INFO     | [job] queue monitor thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:22,269 | INFO     | aborting loop
[2026-01-10 13:05:51] 2026-01-10 12:05:22,302 | INFO     | [payload] validate_post thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:22,495 | INFO     | [payload] control thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:22,556 | INFO     | [data] copytool_in thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:22,572 | INFO     | [payload] failed_post thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:22,786 | INFO     | [data] control thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:22,786 | INFO     | all job control threads have been joined
[2026-01-10 13:05:51] 2026-01-10 12:05:22,990 | INFO     | [job] validate thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:23,073 | INFO     | [job] create_data_payload thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:23,073 | INFO     | [payload] validate_pre thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:23,274 | INFO     | [payload] execute_payloads thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:23,274 | INFO     | [job] job monitor thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:23,604 | INFO     | [data] copytool_out thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:23,792 | INFO     | [job] control thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:25,404 | INFO     | [data] queue_monitor thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:31,974 | INFO     | job.realtimelogging is not enabled
[2026-01-10 13:05:51] 2026-01-10 12:05:32,980 | INFO     | [payload] run_realtimelog thread has finished
[2026-01-10 13:05:51] 2026-01-10 12:05:44,720 | INFO     | [monitor] cgroup control has ended
[2026-01-10 13:05:51] 2026-01-10 12:05:45,366 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520929904448)>', '<ExcThread(monitor, started 140520449894144)>']
[2026-01-10 13:05:51] 2026-01-10 12:05:50,392 | INFO     | all workflow threads have been joined
[2026-01-10 13:05:51] 2026-01-10 12:05:50,393 | INFO     | end of generic workflow (traces error code: 0)
[2026-01-10 13:05:51] 2026-01-10 12:05:50,393 | INFO     | traces error code: 0
[2026-01-10 13:05:51] 2026-01-10 12:05:50,393 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-01-10 13:05:51] 2026-01-10 12:05:51,805 | INFO     | PID=1679454 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-01-10 13:05:51] 2026-01-10 12:05:51,806 | INFO     | found 0 job(s) in 20 queues
[2026-01-10 13:05:51] 2026-01-10 12:05:51,806 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-01-10 13:05:51] 2026-01-10 12:05:51,806 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-01-10 13:05:51] 2026-01-10 12:05:51,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-01-10 13:05:51] 2026-01-10 12:05:51,806 | INFO     | [monitor] control thread has ended
[2026-01-10 13:05:51] 2026-01-10 12:05:51,858 [wrapper] ==== pilot stdout END ====
[2026-01-10 13:05:51] 2026-01-10 12:05:51,861 [wrapper] ==== wrapper stdout RESUME ====
[2026-01-10 13:05:51] 2026-01-10 12:05:51,863 [wrapper] pilotpid: 1679454
[2026-01-10 13:05:51] 2026-01-10 12:05:51,866 [wrapper] Pilot exit status: 0
[2026-01-10 13:05:51] 2026-01-10 12:05:51,873 [wrapper] pandaids: 6963189009
[2026-01-10 13:05:51] 2026-01-10 12:05:51,889 [wrapper] cleanup supervisor_pilot 1698213 1679455
[2026-01-10 13:05:51] 2026-01-10 12:05:51,891 [wrapper] Test setup, not cleaning
[2026-01-10 13:05:51] 2026-01-10 12:05:51,894 [wrapper] apfmon messages muted
[2026-01-10 13:05:51] 2026-01-10 12:05:51,896 [wrapper] ==== wrapper stdout END ====
[2026-01-10 13:05:51] 2026-01-10 12:05:51,899 [wrapper] ==== wrapper stderr END ====
[2026-01-10 13:05:51]  *** Error codes and diagnostics ***
[2026-01-10 13:05:51]     "exeErrorCode": 0,
[2026-01-10 13:05:51]     "exeErrorDiag": "",
[2026-01-10 13:05:51]     "pilotErrorCode": 0,
[2026-01-10 13:05:51]     "pilotErrorDiag": "",
[2026-01-10 13:05:51]  *** Listing of results directory ***
[2026-01-10 13:05:51] total 436072
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc    579449 Jan  9 05:21 pilot3.tar.gz
[2026-01-10 13:05:51] -rwx------ 1 boinc boinc     36322 Jan  9 05:25 runpilot2-wrapper.sh
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc      5112 Jan  9 05:30 queuedata.json
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc       100 Jan 10 11:40 wrapper_26015_x86_64-pc-linux-gnu
[2026-01-10 13:05:51] -rwxr-xr-x 1 boinc boinc      7986 Jan 10 11:40 run_atlas
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc       105 Jan 10 11:40 job.xml
[2026-01-10 13:05:51] -rw-r--r-- 2 boinc boinc 223026203 Jan 10 11:40 EVNT.47898824._001456.pool.root.1
[2026-01-10 13:05:51] -rw-r--r-- 2 boinc boinc    592400 Jan 10 11:40 input.tar.gz
[2026-01-10 13:05:51] -rw-r--r-- 2 boinc boinc     15847 Jan 10 11:40 start_atlas.sh
[2026-01-10 13:05:51] drwxrwx--x 2 boinc boinc      4096 Jan 10 11:40 shared
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc         0 Jan 10 11:40 boinc_setup_complete
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc      6443 Jan 10 11:40 init_data.xml
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc         0 Jan 10 11:40 boinc_lockfile
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc      2520 Jan 10 11:40 pandaJob.out
[2026-01-10 13:05:51] -rw------- 1 boinc boinc    989548 Jan 10 11:40 agis_schedconf.cvmfs.json
[2026-01-10 13:05:51] -rw------- 1 boinc boinc   1516240 Jan 10 11:40 agis_ddmendpoints.agis.ALL.json
[2026-01-10 13:05:51] drwx------ 5 boinc boinc      4096 Jan 10 11:40 pilot3
[2026-01-10 13:05:51] -rw------- 1 boinc boinc 217566127 Jan 10 13:04 HITS.47898826._037946.pool.root.1
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc       529 Jan 10 13:04 boinc_task_state.xml
[2026-01-10 13:05:51] -rw------- 1 boinc boinc        95 Jan 10 13:05 pilot_heartbeat.json
[2026-01-10 13:05:51] -rw------- 1 boinc boinc      1015 Jan 10 13:05 memory_monitor_summary.json
[2026-01-10 13:05:51] -rw------- 1 boinc boinc    280778 Jan 10 13:05 log.47898826._037946.job.log.tgz.1
[2026-01-10 13:05:51] -rw------- 1 boinc boinc      7764 Jan 10 13:05 heartbeat.json
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc      8192 Jan 10 13:05 boinc_mmap_file
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc        27 Jan 10 13:05 wrapper_checkpoint.txt
[2026-01-10 13:05:51] -rw------- 1 boinc boinc       747 Jan 10 13:05 pilotlog.txt
[2026-01-10 13:05:51] -rw------- 1 boinc boinc    744673 Jan 10 13:05 log.47898826._037946.job.log.1
[2026-01-10 13:05:51] -rw------- 1 boinc boinc       357 Jan 10 13:05 output.list
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc       620 Jan 10 13:05 runtime_log
[2026-01-10 13:05:51] -rw------- 1 boinc boinc   1044480 Jan 10 13:05 result.tar.gz
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc      8902 Jan 10 13:05 runtime_log.err
[2026-01-10 13:05:51] -rw------- 1 boinc boinc       659 Jan 10 13:05 9ZRMDmLFJy8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmr9gKDm3KSqQo.diag
[2026-01-10 13:05:51] -rw-r--r-- 1 boinc boinc     11716 Jan 10 13:05 stderr.txt
[2026-01-10 13:05:51] HITS file was successfully produced:
[2026-01-10 13:05:51] -rw------- 1 boinc boinc 217566127 Jan 10 13:04 shared/HITS.pool.root.1
[2026-01-10 13:05:51]  *** Contents of shared directory: ***
[2026-01-10 13:05:51] total 431892
[2026-01-10 13:05:51] -rw-r--r-- 2 boinc boinc 223026203 Jan 10 11:40 ATLAS.root_0
[2026-01-10 13:05:51] -rw-r--r-- 2 boinc boinc    592400 Jan 10 11:40 input.tar.gz
[2026-01-10 13:05:51] -rw-r--r-- 2 boinc boinc     15847 Jan 10 11:40 start_atlas.sh
[2026-01-10 13:05:51] -rw------- 1 boinc boinc 217566127 Jan 10 13:04 HITS.pool.root.1
[2026-01-10 13:05:51] -rw------- 1 boinc boinc   1044480 Jan 10 13:05 result.tar.gz
13:05:53 (1675669): run_atlas exited; CPU time 19431.115233
13:05:53 (1675669): called boinc_finish(0)

</stderr_txt>
]]>

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